Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-57 226.5 110 100.0
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 4.0e-54 214.5 105 98.1
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 4.0e-54 214.5 105 98.1
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 4.0e-54 214.5 105 98.1
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 9.2e-51 203.4 105 90.5
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.3e-49 198.7 105 87.6
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 3.8e-49 198.0 105 86.7
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 2.0e-42 175.6 105 75.2
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 2.8e-39 165.2 105 71.4
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 3.6e-39 164.9 105 69.5
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 1.4e-35 152.9 105 64.8
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 2.1e-34 149.1 105 67.6
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 3.3e-32 141.7 105 62.9
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 2.1e-31 139.0 105 62.9
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.5e-29 132.9 105 60.0
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 2.0e-29 132.5 105 60.0
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 3.7e-28 128.3 104 55.8
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 6.4e-28 127.5 105 57.1
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 2.4e-27 125.6 105 58.1
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.2e-27 125.2 105 57.1
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 5.4e-27 124.4 106 55.7
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 9.2e-27 123.6 105 54.3
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 1.2e-26 123.2 105 54.3
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 1.2e-26 123.2 104 56.7
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 2.1e-26 122.5 104 52.9
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.1e-26 122.5 105 53.3
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-26 122.5 105 53.3
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-26 122.5 105 53.3
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.0e-26 120.9 105 52.4
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.0e-26 120.9 105 52.4
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.0e-25 120.2 105 54.3
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.3e-25 119.8 103 51.5
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 1.7e-25 119.4 104 51.0
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 1.7e-25 119.4 103 51.5
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 3.9e-25 118.2 106 52.8
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 6.6e-25 117.5 103 51.5
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 1.1e-24 116.7 106 56.6
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 1.6e-23 112.8 104 47.1
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 1.6e-23 112.8 104 50.0
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 2.1e-23 112.5 104 49.0
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 4.7e-23 111.3 105 44.8
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 8.1e-23 110.5 105 44.8
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 8.1e-23 110.5 105 44.8
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 1.1e-22 110.2 105 46.7
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 1.1e-22 110.2 104 48.1
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 1.1e-22 110.2 103 47.6
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 1.4e-22 109.8 104 49.0
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.8e-22 109.4 110 49.1
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 2.4e-22 109.0 103 47.6
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 3.1e-22 108.6 105 43.8
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 3.1e-22 108.6 106 48.1
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 4.0e-22 108.2 105 45.7
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 4.0e-22 108.2 106 44.3
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 5.2e-22 107.8 104 46.2
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 6.8e-22 107.5 105 46.7
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 1.2e-21 106.7 110 47.3
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 1.2e-21 106.7 105 47.6
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 5.8e-21 104.4 104 45.2
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 5.8e-21 104.4 104 45.2
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 7.6e-21 104.0 110 46.4
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 1.7e-20 102.8 105 40.0
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.7e-20 102.8 105 48.6
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 2.2e-20 102.4 108 44.4
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 2.2e-20 102.4 105 45.7
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 4.9e-20 101.3 105 44.8
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.1e-19 100.1 105 41.9
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.4e-19 99.8 98 51.0
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.4e-19 99.8 105 47.6
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.9e-19 99.4 105 46.7
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.4e-19 99.0 105 47.6
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 2.4e-19 99.0 101 50.5
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 4.1e-19 98.2 104 44.2
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 7.1e-19 97.4 104 43.3
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 9.2e-19 97.1 104 43.3
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 9.2e-19 97.1 104 41.3
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 2.7e-18 95.5 105 43.8
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 2.7e-18 95.5 104 41.3
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 4.6e-18 94.7 106 43.4
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-17 93.2 105 41.0
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.3e-17 93.2 105 41.0
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 1.7e-17 92.8 105 45.7
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.7e-17 92.8 104 42.3
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 5.1e-17 91.3 104 42.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 8.7e-17 90.5 104 42.3
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 8.7e-17 90.5 105 43.8
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.1e-16 90.1 104 42.3
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 4.3e-16 88.2 99 40.4
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 4.3e-16 88.2 104 41.3
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 5.6e-16 87.8 104 40.4
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 7.3e-16 87.4 104 41.3
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 4.7e-15 84.7 104 40.4
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 6.9e-14 80.9 89 44.9
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 9.0e-14 80.5 103 40.8
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-13 80.1 104 38.5
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 4.4e-13 78.2 105 39.0
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.3e-12 76.6 68 52.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.3e-12 76.6 105 43.8
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 2.2e-12 75.9 103 36.9
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 4.9e-12 74.7 105 42.9
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 2.4e-11 72.4 56 53.6
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 5.4e-11 71.2 84 38.1
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 5.4e-11 71.2 64 50.0
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 2.7e-10 68.9 105 37.1
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 7.8e-10 67.4 118 33.9
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.3e-09 66.6 92 38.0
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 2.3e-09 65.9 104 32.7
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 8.7e-09 63.9 58 44.8
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 1.9e-08 62.8 61 49.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 2.5e-08 62.4 56 46.4
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 9.6e-08 60.5 56 42.9
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 2.4e-06 55.8 103 35.0


User provided reference genes

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