Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung02209 Brassica carinata HOM05D000292 ORTHO05D000172 2.0e-77 292.4 144 100.0
BcaC03g18457 Brassica carinata HOM05D000292 ORTHO05D000172 7.5e-77 290.4 142 100.0
C02p08040 Brassica napus HOM05D000292 ORTHO05D000172 7.5e-77 290.4 142 100.0
BolC2t06726H Brassica oleracea HOM05D000292 ORTHO05D000172 7.5e-77 290.4 142 100.0
A02p03280 Brassica napus HOM05D000292 ORTHO05D000172 1.0e-70 270.0 142 93.7
BraA02t05298Z Brassica rapa HOM05D000292 ORTHO05D000172 1.0e-70 270.0 142 93.7
BcaNung02208 Brassica carinata HOM05D000292 ORTHO05D000172 1.7e-68 262.7 142 93.7
BcaB01g06200 Brassica carinata HOM05D000292 ORTHO05D000172 3.0e-54 215.3 145 77.2
CARHR211460 Cardamine hirsuta HOM05D000292 ORTHO05D000172 1.7e-41 172.9 135 66.7
AL6G11050 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 8.3e-36 154.1 139 58.3
AT5G01150 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 3.9e-33 145.2 138 56.5
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 1.4e-30 136.7 142 51.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.4e-30 136.7 142 51.4
Carub.0006s0074 Capsella rubella HOM05D000292 ORTHO05D000172 4.9e-28 128.3 142 52.1
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 1.1e-27 127.1 137 51.1
Carub.0006s0075 Capsella rubella HOM05D000292 ORTHO05D000172 3.5e-26 122.1 135 51.9
BraA10t45392Z Brassica rapa HOM05D000292 ORTHO05D000172 1.7e-25 119.8 137 50.4
AL6G11080 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 3.0e-25 119.0 136 52.2
AT5G01120 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.1e-24 117.1 135 49.6
AL8G17250 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.5e-24 116.7 145 47.6
C09p74530 Brassica napus HOM05D000292 ORTHO05D000172 5.6e-24 114.8 139 46.8
BolC9t60185H Brassica oleracea HOM05D000292 ORTHO05D000172 5.6e-24 114.8 139 46.8
BcaNung02765 Brassica carinata HOM05D000292 ORTHO05D000172 7.3e-24 114.4 142 46.5
BcaNung02761 Brassica carinata HOM05D000292 ORTHO05D000172 9.6e-24 114.0 131 51.1
BraA10t45391Z Brassica rapa HOM05D000292 ORTHO05D000172 1.2e-23 113.6 137 46.7
A10p33600 Brassica napus HOM05D000292 ORTHO05D000172 1.6e-23 113.2 136 47.1
BcaNung02764 Brassica carinata HOM05D000292 ORTHO05D000172 4.7e-23 111.7 139 45.3
AT5G43240 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 2.0e-21 106.3 137 43.1
CARHR211450 Cardamine hirsuta HOM05D000292 ORTHO05D000172 3.8e-20 102.1 142 45.8
Sp6g40510 Schrenkiella parvula HOM05D000292 ORTHO05D000172 1.1e-19 100.5 133 46.6
BraA04t16967Z Brassica rapa HOM05D000292 ORTHO05D000172 1.4e-19 100.1 142 43.0
A04p13060 Brassica napus HOM05D000292 ORTHO05D000172 1.9e-19 99.8 142 43.0
AL6G11090 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 7.1e-19 97.8 143 42.7
Sp7g01870 Schrenkiella parvula HOM05D000292 ORTHO05D000172 7.1e-19 97.8 142 42.3
AT5G01140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.6e-18 96.7 133 48.1
AT5G01130 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 4.6e-18 95.1 99 52.5
Sp4g10500 Schrenkiella parvula HOM05D000292 ORTHO05D000172 2.5e-16 89.4 91 52.7
THA.LOC104816225 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 4.3e-16 88.6 89 55.1
CARHR083500 Cardamine hirsuta HOM05D000292 ORTHO05D000172 7.3e-16 87.8 97 45.4
CARHR211440 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.1e-15 86.3 142 41.5
C04p46830 Brassica napus HOM05D000292 ORTHO05D000172 3.6e-15 85.5 142 41.5
BolC4t26271H Brassica oleracea HOM05D000292 ORTHO05D000172 1.8e-14 83.2 112 46.4
AT3G09140 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 7.6e-13 77.8 92 46.7
Sp5g15130 Schrenkiella parvula HOM05D000020 ORTHO05D000172 9.9e-13 77.4 139 38.1
Aa31LG3G1640 Aethionema arabicum HOM05D000292 ORTHO05D000172 1.3e-12 77.0 140 30.0
THA.LOC104823279 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 1.7e-12 76.6 129 41.1
CARHR107120 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.9e-12 75.9 90 46.7
Sp3g24320 Schrenkiella parvula HOM05D000292 ORTHO05D000172 3.8e-12 75.5 127 39.4
Carub.0002s0600 Capsella rubella HOM05D000292 ORTHO05D000172 1.4e-11 73.6 139 36.7
BcaC09g49752 Brassica carinata HOM05D000292 ORTHO05D000172 3.2e-11 72.4 125 36.0
A01p26210 Brassica napus HOM05D000292 ORTHO05D000172 5.4e-11 71.6 124 34.7
A04p13080 Brassica napus HOM05D000292 ORTHO05D000172 5.4e-11 71.6 141 37.6
Sp1g34300 Schrenkiella parvula HOM05D000292 ORTHO05D000172 5.4e-11 71.6 97 46.4
AL3G20190 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 9.3e-11 70.9 109 38.5
BolC1t03264H Brassica oleracea HOM05D000292 ORTHO05D000172 1.6e-10 70.1 123 35.0
Carub.0003s0828 Capsella rubella HOM05D000292 ORTHO05D000172 3.5e-10 68.9 87 43.7
AL1G22140 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 6.0e-10 68.2 81 44.4
BcaB06g27454 Brassica carinata HOM05D000292 ORTHO05D000172 7.9e-10 67.8 47 68.1
A07p06370 Brassica napus HOM05D000292 ORTHO05D000172 1.0e-09 67.4 81 50.6
C07p09510 Brassica napus HOM05D000292 ORTHO05D000172 1.0e-09 67.4 77 50.6
A05p39770 Brassica napus HOM05D000292 ORTHO05D000172 1.3e-09 67.0 136 33.1
BraA05t22760Z Brassica rapa HOM05D000292 ORTHO05D000172 1.3e-09 67.0 136 33.1
BcaC06g35942 Brassica carinata HOM05D000292 ORTHO05D000172 2.3e-09 66.2 81 46.9
BolC7t41380H Brassica oleracea HOM05D000292 ORTHO05D000172 3.9e-09 65.5 77 49.4
THA.LOC104816224 Tarenaya hassleriana HOM05D000292 ORTHO05D000172 3.9e-09 65.5 129 37.2
BolC5t34533H Brassica oleracea HOM05D000292 ORTHO05D000172 5.1e-09 65.1 136 34.6
Gohir.D01G214200 Gossypium hirsutum HOM05D000292 ORTHO05D000172 5.1e-09 65.1 141 29.8
Gorai.002G260300 Gossypium raimondii HOM05D000292 ORTHO05D000172 5.1e-09 65.1 141 29.8
Thhalv10012284m.g Eutrema salsugineum HOM05D000292 ORTHO05D016587 6.7e-09 64.7 139 33.8
C05p58810 Brassica napus HOM05D000292 ORTHO05D000172 8.7e-09 64.3 136 34.6
Carub.0001s1072 Capsella rubella HOM05D000292 ORTHO05D000172 1.1e-08 63.9 77 42.9
Gohir.D01G214100 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.1e-08 63.9 99 36.4
AL638U10010 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 2.5e-08 62.8 81 40.7
C07p58610 Brassica napus HOM05D000292 ORTHO05D000172 4.3e-08 62.0 74 45.9
Carub.0001s1073 Capsella rubella HOM05D000292 ORTHO05D000172 4.3e-08 62.0 51 54.9
Gohir.A01G224650 Gossypium hirsutum HOM05D000292 ORTHO05D000172 4.3e-08 62.0 100 39.0
Aa31LG1G3020 Aethionema arabicum HOM05D000292 ORTHO05D000172 5.6e-08 61.6 72 48.6
Thhalv10002899m.g Eutrema salsugineum HOM05D000292 ORTHO05D000172 5.6e-08 61.6 65 44.6
AL1G22150 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 7.4e-08 61.2 77 39.0
AL6G14060 Arabidopsis lyrata HOM05D000292 ORTHO05D014388 1.3e-07 60.5 60 50.0
AT3G09110 Arabidopsis thaliana HOM05D000292 ORTHO05D000172 1.6e-07 60.1 70 47.1
AT5G37320 Arabidopsis thaliana HOM05D000292 ORTHO05D016587 1.6e-07 60.1 145 28.3
Gohir.A01G224600 Gossypium hirsutum HOM05D000292 ORTHO05D000172 1.6e-07 60.1 100 33.0
BcaNung05571 Brassica carinata HOM05D000292 ORTHO05D000172 2.1e-07 59.7 74 44.6
C05p15900 Brassica napus HOM05D000292 ORTHO05D000172 2.1e-07 59.7 74 44.6
BolC5t30294H Brassica oleracea HOM05D000292 ORTHO05D000172 2.1e-07 59.7 74 44.6
BcaNung05567 Brassica carinata HOM05D000292 ORTHO05D000172 2.8e-07 59.3 88 40.9
C08p06620 Brassica napus HOM05D019758 ORTHO05D016587 3.7e-07 58.9 92 38.0
Aa31LG1G3760 Aethionema arabicum HOM05D000292 ORTHO05D000172 4.8e-07 58.5 50 52.0
AL3G20200 Arabidopsis lyrata HOM05D000292 ORTHO05D000172 1.4e-06 57.0 44 54.5
BcaB04g17549 Brassica carinata HOM05D000292 ORTHO05D000172 1.8e-06 56.6 73 46.6
Hma1.2p1_0710F.1_g207430 Hydrangea macrophylla HOM05D000292 ORTHO05D000172 1.8e-06 56.6 138 31.9
Sp7g01570 Schrenkiella parvula HOM05D000292 ORTHO05D000172 1.8e-06 56.6 135 28.1
CARHR107070 Cardamine hirsuta HOM05D000292 ORTHO05D000172 2.4e-06 56.2 133 29.3
TAR636G2237 Trochodendron aralioides HOM05D000292 ORTHO05D000172 3.1e-06 55.8 135 32.6
C05p58800 Brassica napus HOM05D000292 ORTHO05D000172 4.0e-06 55.5 91 34.1
Medtr7g058710 Medicago truncatula HOM05D000292 ORTHO05D000172 5.3e-06 55.1 136 30.9
TPR.G11719 Trifolium pratense HOM05D000292 ORTHO05D000172 5.3e-06 55.1 140 30.0
BcaC05g29642 Brassica carinata HOM05D000292 ORTHO05D000172 6.9e-06 54.7 88 34.1
A07p36650 Brassica napus HOM05D000292 ORTHO05D000172 6.9e-06 54.7 45 51.1
TAR636G1632 Trochodendron aralioides HOM05D000292 ORTHO05D000172 6.9e-06 54.7 138 31.2
Gohir.A01G224500 Gossypium hirsutum HOM05D000292 ORTHO05D000172 9.0e-06 54.3 172 30.2


User provided reference genes

Program Settings