Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 6.3e-144 514.2 287 100.0
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.9e-133 478.8 282 95.7
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 5.0e-133 478.0 283 95.1
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.9e-132 476.1 282 95.0
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 4.9e-128 461.5 282 92.6
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-127 460.3 279 92.5
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-127 460.3 279 92.5
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.1e-127 460.3 279 92.5
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 1.9e-127 459.5 279 92.5
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 1.9e-127 459.5 279 92.5
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.2e-127 458.8 282 91.8
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 7.0e-127 457.6 279 92.8
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.0e-126 456.1 282 91.5
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 1.8e-122 443.0 282 89.4
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 4.4e-121 438.3 283 87.6
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.4e-119 432.6 276 87.3
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 3.2e-119 432.2 282 86.2
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 3.2e-119 432.2 282 86.2
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 3.2e-119 432.2 276 87.3
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 4.1e-119 431.8 276 87.7
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 4.1e-119 431.8 276 87.7
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 4.1e-119 431.8 276 87.7
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 7.0e-119 431.0 258 95.3
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 7.0e-119 431.0 276 87.0
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 2.1e-118 429.5 276 87.3
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 2.7e-118 429.1 276 87.3
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 7.8e-118 427.6 276 85.9
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 5.1e-117 424.9 276 85.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 6.6e-117 424.5 276 85.5
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 2.5e-116 422.5 254 94.9
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.5e-116 422.5 277 86.3
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.4e-114 416.8 276 84.4
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 4.0e-114 415.2 277 84.1
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 1.4e-111 406.8 281 82.2
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.2e-110 403.7 279 82.4
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.1e-110 402.9 277 83.8
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 2.1e-110 402.9 281 81.1
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.7e-110 402.5 279 81.0
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 6.0e-110 401.4 280 81.4
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.0e-110 401.4 275 82.2
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 6.0e-110 401.4 279 80.3
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 1.3e-109 400.2 281 80.8
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 1.3e-109 400.2 277 80.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 1.3e-109 400.2 277 80.5
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.3e-109 399.4 279 81.0
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.0e-109 399.1 276 82.2
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 3.9e-109 398.7 277 80.9
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 3.9e-109 398.7 275 82.5
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 3.9e-109 398.7 275 81.5
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 3.9e-109 398.7 277 81.2
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.1e-109 398.3 275 81.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.6e-109 397.5 276 82.6
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 1.9e-108 396.4 275 81.1
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 3.3e-108 395.6 277 80.5
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 3.3e-108 395.6 279 81.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 4.3e-108 395.2 275 82.2
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 4.3e-108 395.2 276 80.4
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 5.6e-108 394.8 281 80.4
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 5.6e-108 394.8 287 79.4
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 7.3e-108 394.4 276 80.1
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 9.5e-108 394.0 277 80.9
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.6e-107 393.3 277 80.9
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 3.6e-107 392.1 277 79.4
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 3.6e-107 392.1 272 82.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 4.7e-107 391.7 272 80.1
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 6.2e-107 391.3 278 78.8
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 8.1e-107 391.0 277 79.8
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.4e-106 390.2 276 78.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.4e-106 389.4 271 81.9
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 3.1e-106 389.0 275 80.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 4.0e-106 388.7 277 77.6
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.0e-106 388.7 291 76.6
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.2e-106 388.3 277 79.4
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 6.8e-106 387.9 282 77.3
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 6.8e-106 387.9 277 78.7
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 6.8e-106 387.9 291 75.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 8.9e-106 387.5 275 80.0
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 8.9e-106 387.5 255 85.1
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 1.2e-105 387.1 274 79.2
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 1.2e-105 387.1 274 80.3
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.2e-105 387.1 278 79.9
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.2e-105 387.1 277 78.3
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.5e-105 386.7 274 80.3
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 1.5e-105 386.7 268 81.7
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 1.5e-105 386.7 277 78.0
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.5e-105 386.7 282 77.7
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.0e-105 386.3 270 79.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.6e-105 386.0 277 78.0
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 2.6e-105 386.0 277 78.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 2.6e-105 386.0 277 79.1
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-105 386.0 277 79.1
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.6e-105 386.0 277 79.1
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 3.4e-105 385.6 281 79.0
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 3.4e-105 385.6 274 78.8
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 4.4e-105 385.2 278 80.2
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 5.8e-105 384.8 277 78.0
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.6e-105 384.4 277 78.7
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 7.6e-105 384.4 277 79.1
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 9.9e-105 384.0 231 95.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.3e-104 383.6 277 78.3
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.3e-104 383.6 271 78.6
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 1.3e-104 383.6 275 78.9
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 1.7e-104 383.3 278 79.1
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 2.9e-104 382.5 277 78.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 4.9e-104 381.7 277 77.6
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 4.9e-104 381.7 282 78.0
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 4.9e-104 381.7 278 78.8
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 6.4e-104 381.3 279 78.5
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 8.4e-104 380.9 272 80.5
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 8.4e-104 380.9 277 77.3
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.4e-103 380.2 276 78.6
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.9e-103 379.8 276 77.5
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.4e-103 379.4 278 76.3
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 7.1e-103 377.9 272 78.3
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 9.2e-103 377.5 279 78.1
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 2.1e-102 376.3 273 78.4
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-102 375.9 280 78.9
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 6.0e-102 374.8 273 78.4
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 6.0e-102 374.8 271 79.3
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 7.8e-102 374.4 279 79.2
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 7.8e-102 374.4 270 78.9
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 7.8e-102 374.4 328 69.5
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 5.1e-101 371.7 254 83.9
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 5.1e-101 371.7 277 76.9
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 5.6e-100 368.2 271 77.5
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.6e-99 366.7 275 76.4
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 3.6e-99 365.5 278 76.6
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 4.7e-99 365.2 253 81.4
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 6.2e-99 364.8 256 72.3
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.8e-98 363.2 265 77.7
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 5.3e-98 361.7 279 76.0
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 6.9e-98 361.3 261 81.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 3.4e-97 359.0 278 75.2
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 2.9e-96 355.9 263 76.8
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.9e-96 355.9 264 69.3
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 8.4e-96 354.4 266 74.8
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 3.5e-94 349.0 258 77.5
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 7.8e-94 347.8 273 72.5
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.7e-93 346.7 231 85.7
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.3e-93 346.3 251 79.3
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 8.7e-93 344.4 264 75.0
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.7e-93 344.4 251 78.1
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.1e-87 327.4 227 83.7
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 3.5e-86 322.4 276 63.0
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 4.6e-86 322.0 281 70.5
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 8.1e-83 311.2 254 76.0
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 2.4e-82 309.7 265 64.5
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 6.9e-82 308.1 262 67.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 7.6e-81 304.7 284 61.3
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 1.7e-80 303.5 314 62.4
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.1e-78 296.6 277 65.3
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.1e-78 296.6 277 65.3
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 2.5e-76 289.7 250 58.8
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.8e-74 283.5 250 59.6
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 4.9e-72 275.4 250 59.6
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 5.5e-71 271.9 217 75.1
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 7.1e-71 271.6 196 82.1
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 6.3e-67 258.5 194 80.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-66 256.5 210 75.7
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 1.6e-62 243.8 183 82.5
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 3.1e-58 229.6 274 46.7
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 4.2e-55 219.2 150 74.0
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 6.7e-53 211.8 246 52.0
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 5.9e-49 198.7 124 78.2
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 2.2e-48 196.8 125 77.6
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 6.5e-48 195.3 150 68.0
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 2.8e-43 179.9 140 79.3
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.1e-42 176.4 164 70.1
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.0e-36 157.1 100 77.0
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 7.7e-33 145.2 122 65.6
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.2e-32 143.7 145 66.9
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 1.1e-31 141.4 78 84.6
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 3.2e-31 139.8 96 72.9
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 1.2e-30 137.9 108 74.1
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.6e-30 136.3 261 37.9
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 1.3e-24 117.9 76 75.0
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 5.2e-21 105.9 146 58.2
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 1.2e-17 94.7 107 66.4
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.9e-16 90.1 83 79.5
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.5e-15 87.8 122 46.7
BolC4t25212H Brassica oleracea HOM05D003763 ORTHO05D004315 6.4e-11 72.4 48 72.9
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 5.0e-08 62.8 93 41.9
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.8e-06 57.0 76 31.6


User provided reference genes

Program Settings