Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01450 Brassica carinata HOM05D021519 ORTHO05D023913 1.2e-67 259.6 122 100.0
A06p44040 Brassica napus HOM05D021519 ORTHO05D023913 1.3e-24 116.7 65 89.2
BraA06t27278Z Brassica rapa HOM05D021519 ORTHO05D023913 1.3e-24 116.7 65 89.2
BcaB02g10574 Brassica carinata HOM05D004939 ORTHO05D005843 2.7e-19 99.0 130 46.9
A05p11970 Brassica napus HOM05D004939 ORTHO05D005843 3.5e-19 98.6 130 46.9
BraA05t20140Z Brassica rapa HOM05D004939 ORTHO05D005843 3.5e-19 98.6 130 46.9
Sp4g15900 Schrenkiella parvula HOM05D004939 ORTHO05D005843 3.5e-19 98.6 130 46.9
BcaC02g11440 Brassica carinata HOM05D004939 ORTHO05D005843 4.6e-19 98.2 130 46.2
CARHR127580 Cardamine hirsuta HOM05D004939 ORTHO05D005843 1.0e-18 97.1 130 46.9
AL4G29230 Arabidopsis lyrata HOM05D004939 ORTHO05D005843 3.9e-18 95.1 129 46.5
C04p15520 Brassica napus HOM05D004939 ORTHO05D005843 8.7e-18 94.0 130 44.6
BolC4t23123H Brassica oleracea HOM05D004939 ORTHO05D005843 8.7e-18 94.0 130 44.6
BcaB06g28697 Brassica carinata HOM05D004939 ORTHO05D005843 1.1e-17 93.6 129 45.7
Carub.0004s1519 Capsella rubella HOM05D004939 ORTHO05D005843 1.9e-17 92.8 130 45.4
Thhalv10016779m.g Eutrema salsugineum HOM05D004939 ORTHO05D005843 2.5e-17 92.4 130 44.6
BcaC09g49204 Brassica carinata HOM05D004939 ORTHO05D005843 7.3e-17 90.9 131 44.3
BolC1t04101H Brassica oleracea HOM05D004939 ORTHO05D005843 2.8e-16 89.0 136 42.6
AT2G33560 Arabidopsis thaliana HOM05D004939 ORTHO05D005843 3.6e-16 88.6 129 44.2
Aa31LG9G13490 Aethionema arabicum HOM05D004939 ORTHO05D005843 1.8e-15 86.3 130 43.1
BcaC02g07802 Brassica carinata HOM05D004939 ORTHO05D005843 2.4e-15 85.9 131 44.3
THA.LOC104805020 Tarenaya hassleriana HOM05D004939 ORTHO05D005843 3.4e-14 82.0 154 35.7
Sabra05G0200000 Salix brachista HOM05D004939 ORTHO05D005843 2.9e-13 79.0 131 38.2
Potri.005G258300 Populus trichocarpa HOM05D004939 ORTHO05D005843 4.9e-13 78.2 130 38.5
Potri.002G002900 Populus trichocarpa HOM05D004939 ORTHO05D005843 1.1e-12 77.0 130 37.7
VMungo1215G1457 Vigna mungo HOM05D004939 ORTHO05D005843 1.4e-12 76.6 128 40.6
Actinidia37902 Actinidia chinensis HOM05D004939 ORTHO05D005843 4.2e-12 75.1 130 36.2
BcaC01g05245 Brassica carinata HOM05D021519 ORTHO05D023913 4.2e-12 75.1 34 97.1
CsaV3_4G037720 Cucumis sativus L. HOM05D004939 ORTHO05D005843 4.2e-12 75.1 129 38.0
Phvul.003G009000 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 4.2e-12 75.1 127 39.4
QL02p016036 Quercus lobata HOM05D004939 ORTHO05D005843 4.2e-12 75.1 130 37.7
Lj2g0017318 Lotus japonicus HOM05D004939 ORTHO05D005843 5.4e-12 74.7 131 35.9
BraA02t08500Z Brassica rapa HOM05D004939 ORTHO05D005843 7.1e-12 74.3 117 46.2
Glyma.20G006600 Glycine max HOM05D004939 ORTHO05D005843 7.1e-12 74.3 130 37.7
Lalb_Chr10g0095291 Lupinus albus HOM05D004939 ORTHO05D005843 7.1e-12 74.3 155 35.5
Lalb_Chr17g0338141 Lupinus albus HOM05D004939 ORTHO05D005843 7.1e-12 74.3 155 35.5
C01p41420 Brassica napus HOM05D004939 ORTHO05D005843 9.3e-12 73.9 119 43.7
BolC6t38544H Brassica oleracea HOM05D004939 ORTHO05D005843 9.3e-12 73.9 116 45.7
Ca_12499_v3 Cicer arietinum L. HOM05D004939 ORTHO05D005843 1.2e-11 73.6 130 36.9
ClCG11G019130 Citrullus lanatus HOM05D004939 ORTHO05D005843 1.2e-11 73.6 129 36.4
TWI56G0687 Tripterygium wilfordii HOM05D004939 ORTHO05D005843 1.2e-11 73.6 130 36.2
BcaC08g45668 Brassica carinata HOM05D004939 ORTHO05D005843 1.6e-11 73.2 119 43.7
Glyma.07G159700 Glycine max HOM05D004939 ORTHO05D005843 1.6e-11 73.2 155 34.2
Manes.05G129700 Manihot esculenta HOM05D004939 ORTHO05D005843 1.6e-11 73.2 130 36.2
GSVIVG01013446001 Vitis vinifera HOM05D004939 ORTHO05D005843 1.6e-11 73.2 130 36.9
BcaC01g01896 Brassica carinata HOM05D021519 ORTHO05D091019 2.1e-11 72.8 62 64.5
FvH4_5g26460 Fragaria vesca HOM05D004939 ORTHO05D005843 2.1e-11 72.8 130 36.9
FAN13G2929 Fragaria x ananassa HOM05D004939 ORTHO05D005843 2.1e-11 72.8 125 36.8
FAN18G1404 Fragaria x ananassa HOM05D004939 ORTHO05D005843 2.1e-11 72.8 125 36.8
Aqoxy6G03042 Aquilegia oxysepala HOM05D004939 ORTHO05D005843 2.7e-11 72.4 130 35.4
C06p34250 Brassica napus HOM05D004939 ORTHO05D005843 2.7e-11 72.4 116 44.0
Dinv23346 Davidia involucrata HOM05D004939 ORTHO05D005843 2.7e-11 72.4 159 32.7
Prupe.5G002900 Prunus persica HOM05D004939 ORTHO05D005843 2.7e-11 72.4 130 36.9
CAN.G1330.25 Capsicum annuum HOM05D004939 ORTHO05D005843 3.5e-11 72.0 127 37.8
Lj4A813T64 Lonicera japonica HOM05D004939 ORTHO05D005843 3.5e-11 72.0 130 36.2
CSS0014437 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 4.6e-11 71.6 130 36.2
CANSAT11G2529 Cannabis sativa HOM05D004939 ORTHO05D005843 4.6e-11 71.6 130 36.2
DCAR_023017 Daucus carota HOM05D004939 ORTHO05D005843 6.0e-11 71.2 130 36.9
Hma1.2p1_0914F.1_g236160 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 6.0e-11 71.2 159 30.8
Hma1.2p1_0914F.1_g236170 Hydrangea macrophylla HOM05D004939 ORTHO05D005843 6.0e-11 71.2 159 30.8
A06p44030 Brassica napus HOM05D021519 ORTHO05D023913 7.9e-11 70.9 60 58.3
Cfa014153 Carpinus fangiana HOM05D004939 ORTHO05D005843 7.9e-11 70.9 130 36.9
CiPaw.07G131300 Carya illinoinensis HOM05D004939 ORTHO05D005843 7.9e-11 70.9 130 35.4
Duzib128G1725 Durio zibethinus HOM05D004939 ORTHO05D005843 7.9e-11 70.9 130 35.4
Nitab4.5_0000464g0110 Nicotiana tabacum HOM05D004939 ORTHO05D005843 7.9e-11 70.9 124 36.3
PGR031G2869 Punica granatum HOM05D004939 ORTHO05D005843 7.9e-11 70.9 130 36.2
Sed0003879 Sechium edule HOM05D004939 ORTHO05D005843 7.9e-11 70.9 129 34.9
MELO3C017066.2 Cucumis melo HOM05D004939 ORTHO05D005843 1.0e-10 70.5 129 35.7
Migut.N02996 Erythranthe guttata HOM05D004939 ORTHO05D005843 1.0e-10 70.5 130 36.9
Medtr1g035090 Medicago truncatula HOM05D004939 ORTHO05D005843 1.0e-10 70.5 130 35.4
RcHm_v2.0_Chr7g0217371 Rosa chinensis HOM05D004939 ORTHO05D005843 1.0e-10 70.5 128 37.5
TAR381G1514 Trochodendron aralioides HOM05D000924 ORTHO05D001209 1.0e-10 70.5 157 33.1
arahy.Tifrunner.gnm1.ann1.6I9FYE Arachis hypogaea HOM05D004939 ORTHO05D005843 1.3e-10 70.1 130 35.4
arahy.Tifrunner.gnm1.ann1.V9NZM2 Arachis hypogaea HOM05D004939 ORTHO05D005843 1.3e-10 70.1 130 35.4
TPR.G22378 Trifolium pratense HOM05D004939 ORTHO05D005843 1.3e-10 70.1 130 35.4
CSS0031643 Camellia sinensis var. sinensis HOM05D004939 ORTHO05D005843 1.8e-10 69.7 131 35.1
Cc10_g00160 Coffea canephora HOM05D004939 ORTHO05D005843 1.8e-10 69.7 145 33.8
Eucgr.F03614 Eucalyptus grandis HOM05D004939 ORTHO05D005843 1.8e-10 69.7 130 36.9
Rhsim06G0001700 Rhododendron simsii HOM05D004939 ORTHO05D005843 1.8e-10 69.7 130 33.8
Ciclev10001515m.g Citrus clementina HOM05D004939 ORTHO05D005843 3.0e-10 68.9 157 31.2
Gohir.D05G283800 Gossypium hirsutum HOM05D004939 ORTHO05D005843 3.0e-10 68.9 130 35.4
Gohir.D05G283802 Gossypium hirsutum HOM05D004939 ORTHO05D005843 3.0e-10 68.9 130 35.4
Gorai.009G298300 Gossypium raimondii HOM05D004939 ORTHO05D005843 3.0e-10 68.9 130 35.4
HanXRQChr14g0427951 Helianthus annuus HOM05D004939 ORTHO05D005843 3.0e-10 68.9 159 32.7
PGSC0003DMG400010009 Solanum tuberosum HOM05D004939 ORTHO05D005843 3.9e-10 68.6 121 35.5
ATR0605G152 Amborella trichopoda HOM05D004939 ORTHO05D005843 5.1e-10 68.2 130 34.6
C05p49160 Brassica napus HOM05D004939 ORTHO05D005843 5.1e-10 68.2 124 40.3
FAN08G1940 Fragaria x ananassa HOM05D004939 ORTHO05D005843 5.1e-10 68.2 125 36.0
Thecc.10G149200 Theobroma cacao HOM05D004939 ORTHO05D005843 5.1e-10 68.2 130 34.6
MBI04_g18018_MAGBIO Magnolia biondii HOM05D004939 ORTHO05D005843 8.7e-10 67.4 128 35.2
MSTRG.22074 Avicennia marina HOM05D004939 ORTHO05D005843 1.1e-09 67.0 130 34.6
FAN04G1628 Fragaria x ananassa HOM05D004939 ORTHO05D005843 1.1e-09 67.0 128 35.9
Psat6g131960 Pisum sativum HOM05D004939 ORTHO05D005843 1.1e-09 67.0 124 36.3
Sc02g0009340 Simmondsia chinensis HOM05D004939 ORTHO05D005843 1.1e-09 67.0 129 33.3
Sopen04g036540 Solanum pennellii HOM05D004939 ORTHO05D005843 1.1e-09 67.0 127 35.4
Solyc04g082900.4 Solanum lycopersicum HOM05D004939 ORTHO05D005843 1.5e-09 66.6 157 30.6
EL10Ac1g01845 Beta vulgaris HOM05D004939 ORTHO05D005843 1.9e-09 66.2 131 34.4
Gohir.A05G282600 Gossypium hirsutum HOM05D004939 ORTHO05D005843 1.9e-09 66.2 130 33.8
Hund05067 Selenicereus undatus HOM05D004939 ORTHO05D005843 2.5e-09 65.9 126 32.5
Nn5g31070 Nelumbo nucifera HOM05D004939 ORTHO05D005843 3.3e-09 65.5 130 32.3
Zm00001eb236510 Zea mays HOM05D004939 ORTHO05D005843 4.3e-09 65.1 127 35.4
PSO017G2996 Papaver somniferum HOM05D004939 ORTHO05D005843 5.6e-09 64.7 130 34.6
PSO170G6093 Papaver somniferum HOM05D004939 ORTHO05D005843 5.6e-09 64.7 130 34.6
Os02g0193600 Oryza sativa ssp. japonica HOM05D004939 ORTHO05D005843 1.3e-08 63.5 130 34.6
unitig_85.g27224 Utricularia gibba HOM05D004939 ORTHO05D005843 1.3e-08 63.5 130 32.3
Peaxi162Scf00385g00719 Petunia axillaris HOM05D004939 ORTHO05D005843 1.6e-08 63.2 128 33.6
SalBow6G2808 Salvia bowleyana HOM05D004939 ORTHO05D005843 1.6e-08 63.2 130 35.4
Lsat_1_v5_gn_2_3201 Lactuca sativa HOM05D004939 ORTHO05D005843 4.8e-08 61.6 130 33.1
BcaB05g22459 Brassica carinata HOM05D004939 ORTHO05D005843 3.1e-07 58.9 100 39.0
Sabra02G0001700 Salix brachista HOM05D004939 ORTHO05D005843 5.3e-07 58.2 131 32.8
Oeu035772.5 Olea europaea HOM05D004939 ORTHO05D005843 1.2e-06 57.0 89 37.1
SEGI_14150 Sequoiadendron giganteum HOM05D004939 ORTHO05D005843 1.2e-06 57.0 127 32.3
Phvul.004G105714 Phaseolus vulgaris HOM05D004939 ORTHO05D005843 2.0e-06 56.2 85 41.2
ECA238G2856 Erigeron canadensis HOM05D004939 ORTHO05D005843 4.5e-06 55.1 130 30.8


User provided reference genes

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