Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01214 Brassica carinata HOM05D004051 ORTHO05D004480 8.5e-35 149.8 78 100.0
BcaNung01808 Brassica carinata HOM05D004051 ORTHO05D004480 4.7e-33 144.1 82 95.1
Sp2g23150 Schrenkiella parvula HOM05D004051 ORTHO05D004480 4.4e-31 137.5 79 92.4
Thhalv10005218m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.3e-30 136.0 82 89.0
Carub.0006s2191 Capsella rubella HOM05D004051 ORTHO05D004480 2.8e-30 134.8 78 92.3
CARHR189350 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.7e-30 134.4 78 91.0
AL6G35560 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 4.1e-29 131.0 78 89.7
BcaB07g29898 Brassica carinata HOM05D004051 ORTHO05D004480 4.1e-29 131.0 82 87.8
C07p43550 Brassica napus HOM05D004051 ORTHO05D004480 7.0e-29 130.2 77 92.2
AT5G24165 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.6e-28 129.0 78 88.5
BolC7t44882H Brassica oleracea HOM05D004051 ORTHO05D004480 2.0e-28 128.6 77 90.9
A02p40750 Brassica napus HOM05D004051 ORTHO05D004480 7.7e-28 126.7 82 82.9
Aa31LG11G3430 Aethionema arabicum HOM05D004051 ORTHO05D004480 5.7e-23 110.5 78 79.5
BraA06t26423Z Brassica rapa HOM05D004051 ORTHO05D004480 2.2e-22 108.6 77 79.2
A06p35000 Brassica napus HOM05D004051 ORTHO05D004480 3.7e-22 107.8 77 79.2
BcaC03g18002 Brassica carinata HOM05D016815 ORTHO05D020093 5.9e-20 100.5 68 77.9
TAR629G1304 Trochodendron aralioides HOM05D004051 ORTHO05D004480 1.1e-18 96.3 79 68.4
Atru.chr1.148 Acer truncatum HOM05D004051 ORTHO05D004480 1.6e-17 92.4 79 67.1
Hund04853 Selenicereus undatus HOM05D004051 ORTHO05D004480 2.1e-17 92.0 82 62.2
CiPaw.05G255100 Carya illinoinensis HOM05D004051 ORTHO05D004480 2.8e-17 91.7 80 67.5
Dinv29295 Davidia involucrata HOM05D004051 ORTHO05D004480 6.1e-17 90.5 81 63.0
CiPaw.05G252200 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.0e-16 89.7 80 67.5
Ciclev10006352m.g Citrus clementina HOM05D004051 ORTHO05D004480 1.0e-16 89.7 74 64.9
QL09p009613 Quercus lobata HOM05D004051 ORTHO05D004480 1.0e-16 89.7 76 65.8
AUR62019374 Chenopodium quinoa HOM05D004051 ORTHO05D004480 1.4e-16 89.4 83 61.4
Nn1g01872 Nelumbo nucifera HOM05D004051 ORTHO05D004480 3.0e-16 88.2 79 59.5
THA.LOC104821369 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 4.0e-16 87.8 84 60.7
Manes.06G159300 Manihot esculenta HOM05D004051 ORTHO05D004480 5.2e-16 87.4 78 61.5
Potri.012G011600 Populus trichocarpa HOM05D004051 ORTHO05D004480 5.2e-16 87.4 78 61.5
CiPaw.05G255500 Carya illinoinensis HOM05D004051 ORTHO05D004480 6.8e-16 87.0 80 65.0
Sc13g0009750 Simmondsia chinensis HOM05D004051 ORTHO05D004480 6.8e-16 87.0 78 61.5
PGR042G3499 Punica granatum HOM05D004051 ORTHO05D004480 2.6e-15 85.1 79 60.8
Rhsim09G0205000 Rhododendron simsii HOM05D004051 ORTHO05D004480 2.6e-15 85.1 78 60.3
Actinidia03163 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.7e-15 84.0 81 60.5
CSS0008906 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 1.7e-14 82.4 78 60.3
Gohir.D08G104000 Gossypium hirsutum HOM05D004051 ORTHO05D004480 2.9e-14 81.6 88 56.8
Thecc.03G195700 Theobroma cacao HOM05D004051 ORTHO05D004480 2.9e-14 81.6 85 58.8
Gorai.004G111400 Gossypium raimondii HOM05D004051 ORTHO05D004480 3.7e-14 81.3 85 58.8
GSVIVG01019535001 Vitis vinifera HOM05D004051 ORTHO05D004480 4.9e-14 80.9 79 57.0
FAN01G1391 Fragaria x ananassa HOM05D004051 ORTHO05D004480 6.3e-14 80.5 78 56.4
FvH4_7g31780 Fragaria vesca HOM05D004051 ORTHO05D004480 1.1e-13 79.7 78 56.4
GSVIVG01038715001 Vitis vinifera HOM05D004051 ORTHO05D004480 1.1e-13 79.7 74 62.2
Dinv37531 Davidia involucrata HOM05D004051 ORTHO05D004480 1.4e-13 79.3 78 57.7
Dinv38829 Davidia involucrata HOM05D004051 ORTHO05D004480 1.8e-13 79.0 78 57.7
Gohir.A08G096024 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.8e-13 79.0 85 57.6
MBI06_g08462_MAGBIO Magnolia biondii HOM05D004051 ORTHO05D004480 2.4e-13 78.6 80 57.5
Oeu054023.1 Olea europaea HOM05D004051 ORTHO05D004480 2.4e-13 78.6 78 59.0
Sed0007169 Sechium edule HOM05D004051 ORTHO05D004480 2.4e-13 78.6 85 52.9
Actinidia22162 Actinidia chinensis HOM05D004051 ORTHO05D004480 3.2e-13 78.2 78 57.7
CDE09G0659 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 3.2e-13 78.2 79 55.7
RcHm_v2.0_Chr1g0381011 Rosa chinensis HOM05D004051 ORTHO05D004480 4.1e-13 77.8 78 57.7
Actinidia04200 Actinidia chinensis HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 59.0
Duzib205G1876 Durio zibethinus HOM05D004051 ORTHO05D004480 5.4e-13 77.4 79 59.5
FAN10G0142 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 55.1
MD01G1219400 Malus domestica HOM05D004051 ORTHO05D004480 5.4e-13 77.4 78 56.4
DCAR_010606 Daucus carota HOM05D004051 ORTHO05D004480 7.0e-13 77.0 75 57.3
CSS0023187 Camellia sinensis var. sinensis HOM05D004051 ORTHO05D004480 9.2e-13 76.6 78 53.8
CANSAT21G2574 Cannabis sativa HOM05D004051 ORTHO05D004480 9.2e-13 76.6 75 60.0
Potri.003G140300 Populus trichocarpa HOM05D004051 ORTHO05D004480 9.2e-13 76.6 79 58.2
CDE02G2345 Ceratophyllum demersum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 79 55.7
Gohir.D12G237933 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 60.0
Gorai.008G254600 Gossypium raimondii HOM05D004051 ORTHO05D004480 1.2e-12 76.3 80 60.0
Nn3g19011 Nelumbo nucifera HOM05D004051 ORTHO05D004480 2.0e-12 75.5 75 57.3
arahy.Tifrunner.gnm1.ann1.T1KBZJ Arachis hypogaea HOM05D004051 ORTHO05D004480 3.5e-12 74.7 78 60.3
FAN10G1914 Fragaria x ananassa HOM05D004051 ORTHO05D004480 3.5e-12 74.7 86 50.0
ClCG01G000480 Citrullus lanatus HOM05D004051 ORTHO05D004480 4.6e-12 74.3 77 53.2
Manes.02G009700 Manihot esculenta HOM05D004051 ORTHO05D004480 4.6e-12 74.3 78 59.0
HanXRQChr03g0083481 Helianthus annuus HOM05D004051 ORTHO05D004480 1.0e-11 73.2 84 53.6
HPP92_020160 Vanilla planifolia HOM05D004051 ORTHO05D004480 1.0e-11 73.2 92 52.2
Thecc.03G298400 Theobroma cacao HOM05D004051 ORTHO05D004480 1.3e-11 72.8 78 57.7
arahy.Tifrunner.gnm1.ann1.E0UY0G Arachis hypogaea HOM05D004051 ORTHO05D004480 2.3e-11 72.0 79 60.8
Oeu063517.1 Olea europaea HOM05D004051 ORTHO05D004480 2.3e-11 72.0 78 51.3
EL10Ac3g05304 Beta vulgaris HOM05D004051 ORTHO05D004480 2.9e-11 71.6 78 52.6
ECA240G0536 Erigeron canadensis HOM05D004051 ORTHO05D004480 2.9e-11 71.6 78 50.0
Phvul.002G298100 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 3.9e-11 71.2 79 53.2
Gohir.A12G236600 Gossypium hirsutum HOM05D004051 ORTHO05D004480 5.0e-11 70.9 79 57.0
Psat7g025560 Pisum sativum HOM05D004051 ORTHO05D004480 6.6e-11 70.5 79 53.2
DCAR_006488 Daucus carota HOM05D004051 ORTHO05D004480 8.6e-11 70.1 79 54.4
Lalb_Chr05g0224141 Lupinus albus HOM05D004051 ORTHO05D004480 1.1e-10 69.7 75 58.7
Prupe.5G120400 Prunus persica HOM05D004051 ORTHO05D004480 1.1e-10 69.7 78 53.8
unitig_88.g27640 Utricularia gibba HOM05D004051 ORTHO05D004480 1.1e-10 69.7 78 48.7
Glyma.01G225400 Glycine max HOM05D004051 ORTHO05D004480 1.5e-10 69.3 78 53.8
QL02p030350 Quercus lobata HOM05D004051 ORTHO05D004480 1.5e-10 69.3 76 50.0
MELO3C005880.2 Cucumis melo HOM05D004051 ORTHO05D004480 1.9e-10 68.9 77 54.5
Migut.A00641 Erythranthe guttata HOM05D004051 ORTHO05D004480 1.9e-10 68.9 83 50.6
Solyc08g082390.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 1.9e-10 68.9 83 50.6
Sopen08g030650 Solanum pennellii HOM05D004051 ORTHO05D004480 2.5e-10 68.6 81 53.1
Solyc08g008330.3 Solanum lycopersicum HOM05D004051 ORTHO05D004480 3.3e-10 68.2 78 52.6
Sopen08g004210 Solanum pennellii HOM05D004051 ORTHO05D004480 3.3e-10 68.2 78 52.6
AUR62006115 Chenopodium quinoa HOM05D004051 ORTHO05D004480 4.3e-10 67.8 43 72.1
Sed0004965 Sechium edule HOM05D004051 ORTHO05D004480 4.3e-10 67.8 78 55.1
EL10Ac5g12918 Beta vulgaris HOM05D004051 ORTHO05D004480 5.6e-10 67.4 78 52.6
Ciclev10023430m.g Citrus clementina HOM05D004051 ORTHO05D004480 5.6e-10 67.4 78 52.6
COL.COLO4_10706 Corchorus olitorius HOM05D004051 ORTHO05D004480 5.6e-10 67.4 75 58.7
FAN03G1224 Fragaria x ananassa HOM05D004051 ORTHO05D004480 5.6e-10 67.4 73 50.7
Phvul.002G164300 Phaseolus vulgaris HOM05D004051 ORTHO05D004480 7.3e-10 67.0 75 53.3
TPR.G25572 Trifolium pratense HOM05D004051 ORTHO05D004480 7.3e-10 67.0 78 52.6
vmacro11468 Vaccinium macrocarpon HOM05D004051 ORTHO05D004480 7.3e-10 67.0 73 50.7
BcaNung04081 Brassica carinata HOM05D004051 ORTHO05D004480 9.5e-10 66.6 83 51.8
HPP92_020177 Vanilla planifolia HOM05D004051 ORTHO05D004480 9.5e-10 66.6 89 50.6
BcaNung01095 Brassica carinata HOM05D004051 ORTHO05D004480 1.2e-09 66.2 78 52.6
Cc08_g16090 Coffea canephora HOM05D004051 ORTHO05D004480 1.2e-09 66.2 78 51.3
LjContig00312_ERROPOS870357g0027890 Lotus japonicus HOM05D004051 ORTHO05D004480 1.2e-09 66.2 79 54.4
Thhalv10026982m.g Eutrema salsugineum HOM05D004051 ORTHO05D004480 1.6e-09 65.9 83 50.6
Gohir.D12G237800 Gossypium hirsutum HOM05D004051 ORTHO05D004480 1.6e-09 65.9 75 57.3
THA.LOC104815090 Tarenaya hassleriana HOM05D004051 ORTHO05D004480 1.6e-09 65.9 82 53.7
Sp7g21840 Schrenkiella parvula HOM05D004051 ORTHO05D004480 2.1e-09 65.5 78 51.3
TWI15G0384 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 2.1e-09 65.5 78 52.6
Eucgr.E00869 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.8e-09 65.1 75 52.0
AagrBONN_evm.TU.Sc2ySwM_369.239 Anthoceros agrestis HOM05D004051 ORTHO05D004480 3.6e-09 64.7 77 50.6
BcaNung04241 Brassica carinata HOM05D004051 ORTHO05D004480 6.2e-09 63.9 78 55.1
AL7G29460 Arabidopsis lyrata HOM05D004051 ORTHO05D004480 8.0e-09 63.5 81 50.6
FAN08G0063 Fragaria x ananassa HOM05D004051 ORTHO05D004480 8.0e-09 63.5 86 48.8
TWI81G0780 Tripterygium wilfordii HOM05D004051 ORTHO05D004480 8.0e-09 63.5 78 51.3
BcaC09g50935 Brassica carinata HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 50.0
Carub.0007s1723 Capsella rubella HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 50.0
RcHm_v2.0_Chr7g0194731 Rosa chinensis HOM05D004051 ORTHO05D004480 1.0e-08 63.2 78 53.8
AT4G23885 Arabidopsis thaliana HOM05D004051 ORTHO05D004480 1.4e-08 62.8 78 51.3
CiPaw.11G121000 Carya illinoinensis HOM05D004051 ORTHO05D004480 1.4e-08 62.8 78 52.6
HanXRQChr13g0415281 Helianthus annuus HOM05D004051 ORTHO05D004480 1.4e-08 62.8 78 47.4
Lj4g0013283 Lotus japonicus HOM05D004051 ORTHO05D004480 1.4e-08 62.8 74 51.4
FvH4_5g04640 Fragaria vesca HOM05D004051 ORTHO05D004480 1.8e-08 62.4 78 50.0
FAN18G0508 Fragaria x ananassa HOM05D004051 ORTHO05D004480 1.8e-08 62.4 78 50.0
arahy.Tifrunner.gnm1.ann1.ZDLG37 Arachis hypogaea HOM05D004051 ORTHO05D004480 2.3e-08 62.0 80 52.5
Glyma.11G017600 Glycine max HOM05D004051 ORTHO05D004480 2.3e-08 62.0 81 53.1
Atru.chr9.1978 Acer truncatum HOM05D004051 ORTHO05D004480 3.1e-08 61.6 73 49.3
Atru.chr9.1993 Acer truncatum HOM05D004051 ORTHO05D004480 3.1e-08 61.6 73 49.3
CARHR231280 Cardamine hirsuta HOM05D004051 ORTHO05D004480 3.1e-08 61.6 78 52.6
MD06G1107300 Malus domestica HOM05D004051 ORTHO05D004480 3.1e-08 61.6 78 51.3
Hma1.2p1_1461F.1_g285050 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.0e-08 61.2 73 49.3
Hma1.2p1_2808F.1_g328863 Hydrangea macrophylla HOM05D004051 ORTHO05D004480 4.0e-08 61.2 73 49.3
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 6.8e-08 60.5 74 51.4
Peaxi162Scf00102g01842 Petunia axillaris HOM05D004051 ORTHO05D004480 8.9e-08 60.1 78 48.7
Lj2A167G43 Lonicera japonica HOM05D004051 ORTHO05D004480 1.2e-07 59.7 36 77.8
Ah.07g197450 Amaranthus hybridus HOM05D004051 ORTHO05D004480 1.5e-07 59.3 77 49.4
Eucgr.C00183 Eucalyptus grandis HOM05D004051 ORTHO05D004480 2.6e-07 58.5 62 56.5
SGA_v2.0_scaffold96G29014 Striga asiatica HOM05D004051 ORTHO05D004480 2.6e-07 58.5 77 48.1
Aa31LG6G7140 Aethionema arabicum HOM05D004051 ORTHO05D004480 3.4e-07 58.2 75 50.7
PGSC0003DMG400012279 Solanum tuberosum HOM05D004051 ORTHO05D004480 3.4e-07 58.2 78 48.7
PSO063G6907 Papaver somniferum HOM05D004051 ORTHO05D004480 4.4e-07 57.8 75 48.0
PGSC0003DMG400005791 Solanum tuberosum HOM05D004051 ORTHO05D004480 4.4e-07 57.8 79 46.8
Cfa016383 Carpinus fangiana HOM05D021618 ORTHO05D004480 5.8e-07 57.4 69 52.2
ClCG01G001670 Citrullus lanatus HOM05D004051 ORTHO05D004480 5.8e-07 57.4 81 45.7
Sc01g0010310 Simmondsia chinensis HOM05D004051 ORTHO05D004480 5.8e-07 57.4 78 50.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 5.8e-07 57.4 75 48.0
Zm00001eb277870 Zea mays HOM05D004051 ORTHO05D004480 5.8e-07 57.4 96 41.7
Haze_00184 Corylus avellana HOM05D021618 ORTHO05D004480 7.5e-07 57.0 35 74.3
Haze_00874 Corylus avellana HOM05D021618 ORTHO05D004480 7.5e-07 57.0 35 74.3
PGR042G1109 Punica granatum HOM05D004051 ORTHO05D004480 7.5e-07 57.0 76 48.7
Zm00001eb383200 Zea mays HOM05D004051 ORTHO05D004480 7.5e-07 57.0 89 40.4
Prupe.2G311800 Prunus persica HOM05D004051 ORTHO05D004480 9.8e-07 56.6 59 57.6
A01p15190 Brassica napus HOM05D004051 ORTHO05D004480 1.7e-06 55.8 76 46.1
BraA01t01457Z Brassica rapa HOM05D004051 ORTHO05D004480 2.2e-06 55.5 76 46.1
SalBow1G7115 Salvia bowleyana HOM05D004051 ORTHO05D004480 2.9e-06 55.1 73 49.3
Medtr8g099465 Medicago truncatula HOM05D004051 ORTHO05D004480 3.7e-06 54.7 73 45.2
Sabra03G0101300 Salix brachista HOM05D004051 ORTHO05D004480 3.7e-06 54.7 90 41.1
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 4.9e-06 54.3 91 45.1
Sed0015186 Sechium edule HOM05D004051 ORTHO05D004480 4.9e-06 54.3 73 50.7
COL.COLO4_03427 Corchorus olitorius HOM05D004051 ORTHO05D004480 6.4e-06 53.9 34 79.4
SalBow1G2120 Salvia bowleyana HOM05D004051 ORTHO05D004480 6.4e-06 53.9 73 49.3
AUR62010843 Chenopodium quinoa HOM05D004051 ORTHO05D004480 8.3e-06 53.5 73 47.9
CsaV3_5G000560 Cucumis sativus L. HOM05D004051 ORTHO05D004480 8.3e-06 53.5 37 67.6


User provided reference genes

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