Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.4e-208 728.8 416 100.0
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.4e-208 728.8 416 100.0
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 2.2e-190 669.1 421 92.9
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 2.5e-173 612.5 434 81.3
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 2.9e-166 589.0 434 77.9
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 5.4e-160 568.2 439 76.3
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 1.8e-131 473.4 458 65.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 7.1e-128 461.5 453 64.2
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 9.2e-128 461.1 452 65.5
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 2.1e-127 459.9 452 65.5
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 5.1e-126 455.3 447 65.8
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 1.5e-125 453.8 450 64.2
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 3.6e-124 449.1 453 63.6
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 5.8e-122 441.8 458 63.3
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 1.3e-121 440.7 459 63.0
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 7.3e-117 424.9 454 61.5
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 2.3e-110 403.3 400 64.0
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 9.0e-107 391.3 400 63.0
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 2.3e-102 376.7 447 57.7
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.9e-81 306.6 477 48.8
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 3.0e-70 270.0 465 46.2
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 1.8e-62 244.2 460 41.1
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 2.6e-61 240.4 466 39.7
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.7e-60 237.7 455 38.7
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 3.1e-59 233.4 454 41.0
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 9.1e-59 231.9 452 40.5
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.6e-58 230.3 448 40.4
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 4.5e-58 229.6 472 39.2
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.3e-57 228.0 465 41.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.3e-57 228.0 444 40.3
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.8e-57 226.5 467 38.1
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 6.5e-57 225.7 440 39.1
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.8e-54 217.6 440 41.8
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 4.0e-54 216.5 459 39.9
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 4.0e-54 216.5 460 37.2
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.5e-53 214.5 462 39.8
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 5.7e-53 212.6 456 38.6
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 7.5e-53 212.2 443 38.8
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 2.2e-52 210.7 430 37.2
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 3.7e-52 209.9 438 38.1
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 1.4e-51 208.0 429 37.8
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.4e-51 208.0 514 36.2
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 3.1e-51 206.8 431 38.1
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.1e-51 206.8 337 40.4
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.1e-51 206.8 430 36.3
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 4.1e-51 206.5 353 39.1
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.2e-50 204.9 421 38.0
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 2.0e-50 204.1 422 38.9
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 2.7e-50 203.8 371 41.0
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 3.5e-50 203.4 322 41.0
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 1.3e-49 201.4 455 37.1
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 1.7e-49 201.1 435 37.9
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 1.7e-49 201.1 429 36.8
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 2.2e-49 200.7 411 38.2
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 2.9e-49 200.3 358 40.2
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 8.5e-49 198.7 430 37.2
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 8.5e-49 198.7 441 37.6
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 2.5e-48 197.2 468 37.2
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 2.5e-48 197.2 381 38.3
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 2.5e-48 197.2 478 36.4
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 3.2e-48 196.8 452 36.1
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 3.2e-48 196.8 458 36.5
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 5.5e-48 196.1 452 36.5
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 9.4e-48 195.3 464 36.2
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 1.2e-47 194.9 437 36.6
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 8.0e-47 192.2 469 35.0
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 1.4e-46 191.4 417 36.2
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.8e-46 191.0 370 37.3
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.8e-46 191.0 361 38.2
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 2.3e-46 190.7 361 40.2
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 4.0e-46 189.9 444 36.7
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 4.0e-46 189.9 305 40.3
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 6.8e-46 189.1 351 38.7
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 6.8e-46 189.1 421 37.5
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-45 187.2 437 35.5
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 2.6e-45 187.2 437 35.5
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 4.4e-45 186.4 441 36.5
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 9.8e-45 185.3 389 35.7
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 1.3e-44 184.9 418 37.1
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 2.2e-44 184.1 437 35.0
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 8.3e-44 182.2 439 37.8
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 1.6e-42 177.9 418 34.2
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 2.0e-42 177.6 449 36.3
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 2.7e-42 177.2 434 34.6
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.5e-42 176.8 478 34.7
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 3.5e-42 176.8 455 35.4
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 5.9e-42 176.0 445 34.8
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 1.3e-41 174.9 430 36.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 1.3e-41 174.9 434 34.3
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.3e-41 174.9 399 35.8
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 6.5e-41 172.6 305 38.4
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 2.8e-39 167.2 389 34.4
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.0e-38 163.7 302 38.1
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 6.8e-38 162.5 454 33.5
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 8.8e-38 162.2 422 34.4
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 1.5e-37 161.4 494 32.0
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 9.8e-37 158.7 439 32.3
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 4.9e-36 156.4 428 32.0
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 4.9e-36 156.4 418 34.0
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 1.2e-34 151.8 439 33.0
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 1.6e-34 151.4 430 31.2
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 5.0e-33 146.4 366 34.7
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 2.5e-32 144.1 339 33.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.3e-32 143.3 345 34.2
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 5.6e-32 142.9 135 53.3
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.7e-31 139.8 442 30.8
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.1e-31 139.4 415 31.8
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.3e-30 137.5 449 32.3
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 4.0e-30 136.7 401 31.7
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.2e-29 135.2 383 32.4
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 7.5e-29 132.5 256 37.1
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 2.2e-28 131.0 288 36.8
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 7.8e-26 122.5 253 38.7
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 2.3e-25 120.9 273 33.0
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 4.3e-24 116.7 144 47.9
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 5.6e-24 116.3 160 45.6
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 2.0e-21 107.8 302 32.1
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 4.4e-21 106.7 334 34.7
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.3e-17 95.1 191 35.6
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 3.9e-17 93.6 256 35.5
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-15 88.6 106 46.2
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 2.6e-13 80.9 195 36.4
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.4e-13 80.5 230 36.5
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.7e-12 78.2 155 39.4
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 2.2e-12 77.8 155 39.4
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 3.2e-11 73.9 249 30.5
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 4.1e-11 73.6 68 50.0
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 4.1e-11 73.6 405 24.2
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 1.2e-10 72.0 80 52.5
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 6.6e-09 66.2 81 48.1
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 3.3e-08 63.9 122 33.6
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 5.6e-08 63.2 136 40.4
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 3.6e-07 60.5 223 29.6


User provided reference genes

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