Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00554 Brassica carinata HOM05D028134 ORTHO05D024191 1.3e-55 219.5 115 100.0
BcaC07g40365 Brassica carinata HOM05D017174 ORTHO05D032218 1.2e-45 186.4 100 98.0
C02p17070 Brassica napus HOM05D002493 ORTHO05D024191 6.3e-26 120.9 74 90.5
BolC5t32682H Brassica oleracea HOM05D002493 ORTHO05D024191 1.0e-23 113.6 83 77.1
BolC2t07805H Brassica oleracea HOM05D002493 ORTHO05D024191 2.9e-23 112.1 83 77.1
C08p33130 Brassica napus HOM05D002493 ORTHO05D024191 1.1e-22 110.2 99 66.7
BcaNung00556 Brassica carinata HOM05D000089 ORTHO05D002844 2.1e-13 79.3 42 100.0
BcaC07g38614 Brassica carinata HOM05D001015 ORTHO05D000881 1.4e-12 76.6 66 63.6
A08p33870 Brassica napus HOM05D001015 ORTHO05D000881 1.4e-12 76.6 66 63.6
BolC8t49018H Brassica oleracea HOM05D001015 ORTHO05D000881 1.4e-12 76.6 66 63.6
Sp1g09270 Schrenkiella parvula HOM05D001015 ORTHO05D000881 1.4e-12 76.6 88 52.3
BcaC07g38577 Brassica carinata HOM05D001015 ORTHO05D000881 1.8e-12 76.3 67 62.7
C08p13830 Brassica napus HOM05D001015 ORTHO05D000881 1.8e-12 76.3 67 62.7
BcaB08g37363 Brassica carinata HOM05D001015 ORTHO05D000881 3.9e-12 75.1 67 62.7
A09p64960 Brassica napus HOM05D001015 ORTHO05D000881 5.1e-12 74.7 65 61.5
BraA09t41839Z Brassica rapa HOM05D001015 ORTHO05D000881 5.1e-12 74.7 65 61.5
C08p48730 Brassica napus HOM05D001015 ORTHO05D000881 6.7e-12 74.3 66 60.6
Carub.0001s1006 Capsella rubella HOM05D001015 ORTHO05D000881 6.7e-12 74.3 66 60.6
BcaC05g24859 Brassica carinata HOM05D001015 ORTHO05D000881 1.1e-11 73.6 68 58.8
BcaC05g24948 Brassica carinata HOM05D001015 ORTHO05D000881 1.1e-11 73.6 68 58.8
C05p08910 Brassica napus HOM05D001015 ORTHO05D000881 1.1e-11 73.6 68 58.8
BolC5t29639H Brassica oleracea HOM05D001015 ORTHO05D000881 1.1e-11 73.6 68 58.8
BcaC07g41811 Brassica carinata HOM05D001015 ORTHO05D000881 2.0e-11 72.8 66 59.1
BcaC09g48484 Brassica carinata HOM05D001015 ORTHO05D000881 2.0e-11 72.8 64 62.5
BcaC02g08720 Brassica carinata HOM05D028134 ORTHO05D014959 3.3e-11 72.0 131 42.0
BolC8t52412H Brassica oleracea HOM05D001015 ORTHO05D000881 3.3e-11 72.0 68 57.4
BcaC06g34782 Brassica carinata HOM05D028134 ORTHO05D039565 5.7e-11 71.2 38 89.5
BolC7t42991H Brassica oleracea HOM05D028134 ORTHO05D039565 5.7e-11 71.2 38 89.5
Thhalv10008819m.g Eutrema salsugineum HOM05D001015 ORTHO05D000881 5.7e-11 71.2 100 46.0
AL1G21440 Arabidopsis lyrata HOM05D001015 ORTHO05D000881 9.7e-11 70.5 66 57.6
Aa31LG1G4310 Aethionema arabicum HOM05D001015 ORTHO05D000881 1.3e-10 70.1 63 57.1
CARHR010770 Cardamine hirsuta HOM05D001015 ORTHO05D000881 1.3e-10 70.1 66 57.6
A06p07410 Brassica napus HOM05D001015 ORTHO05D000881 1.7e-10 69.7 68 55.9
BraA06t23945Z Brassica rapa HOM05D001015 ORTHO05D000881 1.7e-10 69.7 68 55.9
AT1G10590 Arabidopsis thaliana HOM05D001015 ORTHO05D000881 3.7e-10 68.6 65 56.9
BcaB05g21730 Brassica carinata HOM05D002493 ORTHO05D003175 8.2e-10 67.4 68 58.8
A10p31030 Brassica napus HOM05D002493 ORTHO05D003175 2.4e-09 65.9 68 57.4
BraA10t45148Z Brassica rapa HOM05D002493 ORTHO05D003175 2.4e-09 65.9 68 57.4
HPP92_019951 Vanilla planifolia HOM05D001015 ORTHO05D000881 2.4e-09 65.9 63 54.0
HPP92_019962 Vanilla planifolia HOM05D001015 ORTHO05D000881 2.4e-09 65.9 63 54.0
BcaC06g32223 Brassica carinata HOM05D002493 ORTHO05D003175 5.3e-09 64.7 66 59.1
ClCG08G018040 Citrullus lanatus HOM05D001015 ORTHO05D000881 5.3e-09 64.7 63 54.0
MELO3C010663.2 Cucumis melo HOM05D001015 ORTHO05D000881 5.3e-09 64.7 63 54.0
CsaV3_2G024610 Cucumis sativus L. HOM05D001015 ORTHO05D000881 5.3e-09 64.7 63 54.0
Oeu062987.1 Olea europaea HOM05D001015 ORTHO05D000881 6.9e-09 64.3 65 53.8
Sp6g37700 Schrenkiella parvula HOM05D002493 ORTHO05D003175 9.1e-09 63.9 66 59.1
ATR0730G094 Amborella trichopoda HOM05D001015 ORTHO05D000881 1.2e-08 63.5 63 52.4
BcaB01g05724 Brassica carinata HOM05D002493 ORTHO05D003175 1.2e-08 63.5 68 52.9
Dinv33494 Davidia involucrata HOM05D001015 ORTHO05D000881 1.2e-08 63.5 91 45.1
Thhalv10013510m.g Eutrema salsugineum HOM05D002493 ORTHO05D003175 1.2e-08 63.5 66 57.6
TAR629G1900 Trochodendron aralioides HOM05D001015 ORTHO05D000881 1.2e-08 63.5 56 55.4
vmacro18242 Vaccinium macrocarpon HOM05D001015 ORTHO05D000881 1.2e-08 63.5 65 52.3
TAR374G1358 Trochodendron aralioides HOM05D001015 ORTHO05D000881 1.5e-08 63.2 63 52.4
arahy.Tifrunner.gnm1.ann1.25ELLY Arachis hypogaea HOM05D001015 ORTHO05D000881 2.0e-08 62.8 63 52.4
arahy.Tifrunner.gnm1.ann1.TWH3WC Arachis hypogaea HOM05D001015 ORTHO05D000881 2.0e-08 62.8 63 52.4
Lj7A591T82 Lonicera japonica HOM05D001015 ORTHO05D000881 2.0e-08 62.8 65 52.3
C09p71560 Brassica napus HOM05D002493 ORTHO05D003175 2.6e-08 62.4 68 57.4
BolC9t59917H Brassica oleracea HOM05D002493 ORTHO05D003175 2.6e-08 62.4 68 57.4
MBI10_g11076_MAGBIO Magnolia biondii HOM05D001015 ORTHO05D000881 2.6e-08 62.4 63 50.8
Actinidia16932 Actinidia chinensis HOM05D001015 ORTHO05D000881 3.4e-08 62.0 65 50.8
Aqoxy3G01015 Aquilegia oxysepala HOM05D001015 ORTHO05D000881 4.5e-08 61.6 63 50.8
MSTRG.15511 Avicennia marina HOM05D001015 ORTHO05D000881 4.5e-08 61.6 65 50.8
Eucgr.J02206 Eucalyptus grandis HOM05D001015 ORTHO05D000881 4.5e-08 61.6 63 49.2
BraA03t09582Z Brassica rapa HOM05D002493 ORTHO05D003175 5.9e-08 61.2 68 52.9
Dinv35059 Davidia involucrata HOM05D001015 ORTHO05D000881 5.9e-08 61.2 67 47.8
Sed0013021 Sechium edule HOM05D001015 ORTHO05D000881 5.9e-08 61.2 63 50.8
THA.LOC104823644 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 5.9e-08 61.2 63 54.0
Lsat_1_v5_gn_2_92280 Lactuca sativa HOM05D001015 ORTHO05D000881 7.7e-08 60.8 65 50.8
Rhsim10G0022700 Rhododendron simsii HOM05D001015 ORTHO05D000881 7.7e-08 60.8 65 49.2
vmacro05820 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 7.7e-08 60.8 65 49.2
CARHR208120 Cardamine hirsuta HOM05D002493 ORTHO05D003175 1.0e-07 60.5 66 54.5
TWI36G0839 Tripterygium wilfordii HOM05D001015 ORTHO05D000881 1.0e-07 60.5 63 50.8
TAR622G1348 Trochodendron aralioides HOM05D001015 ORTHO05D000881 1.0e-07 60.5 63 50.8
AT5G05140 Arabidopsis thaliana HOM05D002493 ORTHO05D003175 1.3e-07 60.1 68 52.9
A03p02180 Brassica napus HOM05D002493 ORTHO05D003175 1.3e-07 60.1 65 53.8
CSS0012485 Camellia sinensis var. sinensis HOM05D001015 ORTHO05D000881 1.3e-07 60.1 65 49.2
Cpa.g.sc69.41 Carica papaya HOM05D001015 ORTHO05D000881 1.3e-07 60.1 63 50.8
CiPaw.05G151200 Carya illinoinensis HOM05D001015 ORTHO05D000881 1.3e-07 60.1 63 52.4
Psat4g123880 Pisum sativum HOM05D001015 ORTHO05D000881 1.3e-07 60.1 63 52.4
Rhsim08G0055100 Rhododendron simsii HOM05D001015 ORTHO05D000881 1.3e-07 60.1 65 49.2
THA.LOC104822144 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 1.3e-07 60.1 63 49.2
TPR.G11773 Trifolium pratense HOM05D001015 ORTHO05D000881 1.3e-07 60.1 63 52.4
AL6G14970 Arabidopsis lyrata HOM05D002493 ORTHO05D003175 1.7e-07 59.7 68 52.9
Cfa009146 Carpinus fangiana HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 50.8
Haze_12180 Corylus avellana HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 50.8
Hma1.2p1_2562F.1_g324440 Hydrangea macrophylla HOM05D001015 ORTHO05D000881 1.7e-07 59.7 65 47.7
Lj2g0014762 Lotus japonicus HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 49.2
Manes.12G028600 Manihot esculenta HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 50.8
Potri.010G041000 Populus trichocarpa HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 50.8
Hund05996 Selenicereus undatus HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 47.6
THA.LOC104819465 Tarenaya hassleriana HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 49.2
GSVIVG01013724001 Vitis vinifera HOM05D001015 ORTHO05D000881 1.7e-07 59.7 63 49.2
Aqoxy3G02972 Aquilegia oxysepala HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 49.2
Glyma.01G030800 Glycine max HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 49.2
Hma1.2p1_0993F.1_g245550 Hydrangea macrophylla HOM05D001015 ORTHO05D000881 2.2e-07 59.3 65 47.7
Lj2g0002781 Lotus japonicus HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 47.6
Phvul.002G071300 Phaseolus vulgaris HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 49.2
SEGI_23552 Sequoiadendron giganteum HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 47.6
VMungo1215G0082 Vigna mungo HOM05D001015 ORTHO05D000881 2.2e-07 59.3 63 49.2
Carub.0006s0407 Capsella rubella HOM05D002493 ORTHO05D003175 2.9e-07 58.9 66 54.5
Ca_22720_v3 Cicer arietinum L. HOM05D001015 ORTHO05D000881 2.9e-07 58.9 63 50.8
Lalb_Chr16g0382281 Lupinus albus HOM05D001015 ORTHO05D000881 2.9e-07 58.9 63 47.6
Sc11g0001170 Simmondsia chinensis HOM05D001015 ORTHO05D000881 2.9e-07 58.9 63 49.2
Migut.K01370 Erythranthe guttata HOM05D001015 ORTHO05D000881 3.8e-07 58.5 65 49.2
Medtr8g064590 Medicago truncatula HOM05D001015 ORTHO05D000881 3.8e-07 58.5 63 50.8
QL03p060254 Quercus lobata HOM05D001015 ORTHO05D000881 3.8e-07 58.5 63 49.2
Lalb_Chr09g0326371 Lupinus albus HOM05D001015 ORTHO05D000881 5.0e-07 58.2 63 47.6
MD13G1092100 Malus domestica HOM05D001015 ORTHO05D000881 5.0e-07 58.2 63 50.8
PGR083G1212 Punica granatum HOM05D001015 ORTHO05D000881 5.0e-07 58.2 63 47.6
Cc07_g02280 Coffea canephora HOM05D001015 ORTHO05D000881 6.5e-07 57.8 58 53.4
CANSAT01G0727 Cannabis sativa HOM05D001015 ORTHO05D000881 8.5e-07 57.4 63 49.2
AUR62005381 Chenopodium quinoa HOM05D001015 ORTHO05D000881 8.5e-07 57.4 63 50.8
Ciclev10033038m.g Citrus clementina HOM05D001015 ORTHO05D000881 8.5e-07 57.4 63 49.2
Pp3c6_620 Physcomitrium patens HOM05D001015 ORTHO05D000881 8.5e-07 57.4 63 47.6
BcaC03g13147 Brassica carinata HOM05D002493 ORTHO05D003175 1.1e-06 57.0 68 48.5
C02p02180 Brassica napus HOM05D002493 ORTHO05D003175 1.1e-06 57.0 68 48.5
BolC2t06187H Brassica oleracea HOM05D002493 ORTHO05D003175 1.1e-06 57.0 68 48.5
MD16G1092700 Malus domestica HOM05D001015 ORTHO05D000881 1.1e-06 57.0 63 49.2
Thecc.02G250100 Theobroma cacao HOM05D001015 ORTHO05D000881 1.1e-06 57.0 63 49.2
A09p41040 Brassica napus HOM05D001015 ORTHO05D000881 1.4e-06 56.6 63 46.0
BraA09t39597Z Brassica rapa HOM05D001015 ORTHO05D000881 1.4e-06 56.6 63 46.0
Duzib268G0009 Durio zibethinus HOM05D001015 ORTHO05D000881 1.4e-06 56.6 63 50.8
Thhalv10009071m.g Eutrema salsugineum HOM05D001015 ORTHO05D000881 1.4e-06 56.6 63 46.0
Sp1g21150 Schrenkiella parvula HOM05D001015 ORTHO05D000881 1.4e-06 56.6 63 46.0
BcaC06g35051 Brassica carinata HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 46.0
C07p20270 Brassica napus HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 46.0
BolC7t42549H Brassica oleracea HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 46.0
BraA07t29129Z Brassica rapa HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 46.0
CARHR024170 Cardamine hirsuta HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 44.4
AUR62014043 Chenopodium quinoa HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 49.2
Glyma.02G034800 Glycine max HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 47.6
Phvul.002G071400 Phaseolus vulgaris HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 47.6
Potri.008G189900 Populus trichocarpa HOM05D001015 ORTHO05D000881 1.9e-06 56.2 61 50.8
SMO147G0288 Selaginella moellendorffii HOM05D001015 ORTHO05D000881 1.9e-06 56.2 56 53.6
SEGI_05886 Sequoiadendron giganteum HOM05D001015 ORTHO05D000881 1.9e-06 56.2 65 44.6
VMungo1215G1348 Vigna mungo HOM05D001015 ORTHO05D000881 1.9e-06 56.2 63 47.6
Atru.chr11.2031 Acer truncatum HOM05D001015 ORTHO05D000881 2.5e-06 55.8 63 47.6
FAN22G0440 Fragaria x ananassa HOM05D001015 ORTHO05D000881 2.5e-06 55.8 63 47.6
Lalb_Chr05g0216881 Lupinus albus HOM05D001015 ORTHO05D000881 2.5e-06 55.8 63 46.0
Prupe.1G253600 Prunus persica HOM05D001015 ORTHO05D000881 2.5e-06 55.8 63 47.6
Sabra08G0144300 Salix brachista HOM05D001015 ORTHO05D000881 2.5e-06 55.8 61 49.2
TPR.G21097 Trifolium pratense HOM05D001015 ORTHO05D000881 2.5e-06 55.8 63 49.2
BraA02t04834Z Brassica rapa HOM05D002493 ORTHO05D003175 3.2e-06 55.5 68 47.1
Duzib248G1042 Durio zibethinus HOM05D001015 ORTHO05D000881 3.2e-06 55.5 63 50.8
Duzib251G0185 Durio zibethinus HOM05D001015 ORTHO05D000881 3.2e-06 55.5 63 50.8
Migut.H00122 Erythranthe guttata HOM05D001015 ORTHO05D000881 3.2e-06 55.5 63 46.0
FAN17G1866 Fragaria x ananassa HOM05D001015 ORTHO05D000881 3.2e-06 55.5 85 43.5
Glyma.01G030600 Glycine max HOM05D001015 ORTHO05D000881 3.2e-06 55.5 63 47.6
PSO063G1180 Papaver somniferum HOM05D001015 ORTHO05D000881 3.2e-06 55.5 61 47.5
Psat2g107160 Pisum sativum HOM05D001015 ORTHO05D000881 3.2e-06 55.5 63 47.6
Ca_13996_v3 Cicer arietinum L. HOM05D001015 ORTHO05D000881 4.2e-06 55.1 63 47.6
Eucgr.F01173 Eucalyptus grandis HOM05D001015 ORTHO05D000881 4.2e-06 55.1 55 52.7
Manes.13G030200 Manihot esculenta HOM05D001015 ORTHO05D000881 4.2e-06 55.1 63 47.6
BcaB03g14137 Brassica carinata HOM05D001015 ORTHO05D000881 5.5e-06 54.7 63 44.4
COL.COLO4_24169 Corchorus olitorius HOM05D001015 ORTHO05D000881 5.5e-06 54.7 63 47.6
FAN07G2908 Fragaria x ananassa HOM05D001015 ORTHO05D000881 5.5e-06 54.7 63 46.0
Gohir.A12G142800 Gossypium hirsutum HOM05D001015 ORTHO05D000881 7.2e-06 54.3 59 50.8
Gohir.D12G147600 Gossypium hirsutum HOM05D001015 ORTHO05D000881 7.2e-06 54.3 59 50.8
Gorai.008G158800 Gossypium raimondii HOM05D001015 ORTHO05D000881 7.2e-06 54.3 59 50.8
Medtr5g034290 Medicago truncatula HOM05D001015 ORTHO05D000881 7.2e-06 54.3 67 43.3
Pp3c25_10580 Physcomitrium patens HOM05D001015 ORTHO05D000881 7.2e-06 54.3 62 50.0
BcaC05g26292 Brassica carinata HOM05D001015 ORTHO05D000881 9.4e-06 53.9 63 46.0
BolC5t30995H Brassica oleracea HOM05D001015 ORTHO05D000881 9.4e-06 53.9 63 46.0
FAN12G0485 Fragaria x ananassa HOM05D001015 ORTHO05D000881 9.4e-06 53.9 63 46.0
SGA_v2.0_scaffold30G12467 Striga asiatica HOM05D001015 ORTHO05D000881 9.4e-06 53.9 57 50.9


User provided reference genes

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