Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 0.0e+00 1126.7 639 100.0
BcaC09g50433 Brassica carinata HOM05D004882 ORTHO05D005551 2.3e-250 869.0 645 80.5
C01p25470 Brassica napus HOM05D004882 ORTHO05D005551 2.9e-250 868.6 645 80.5
BolC1t02498H Brassica oleracea HOM05D004882 ORTHO05D005551 2.9e-250 868.6 645 80.6
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 3.7e-245 851.7 647 76.2
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 3.2e-244 848.6 648 78.1
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 7.9e-195 684.5 689 61.8
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 9.6e-193 677.6 681 63.0
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 9.3e-188 661.0 675 63.3
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 3.1e-183 646.0 681 60.4
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 4.2e-180 635.6 605 67.1
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.7e-174 614.8 674 62.0
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 1.2e-163 580.9 658 60.3
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 2.0e-145 520.4 659 53.3
BcaC07g38031 Brassica carinata HOM05D004882 ORTHO05D005551 2.2e-112 410.6 633 47.9
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 1.5e-105 387.9 647 47.8
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 1.9e-84 317.8 711 38.4
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 2.4e-79 300.8 633 39.5
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 3.9e-77 293.5 700 38.0
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 3.9e-77 293.5 687 37.6
BcaNung00136 Brassica carinata HOM05D004882 ORTHO05D005551 6.7e-77 292.7 175 92.6
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 2.1e-75 287.7 647 37.7
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 4.0e-74 283.5 735 36.9
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 4.0e-74 283.5 631 38.2
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 1.2e-73 282.0 735 36.7
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.6e-73 280.8 695 36.3
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 4.5e-73 280.0 733 35.9
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 3.8e-72 276.9 744 35.5
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 4.9e-72 276.6 744 35.5
Atru.chr5.2156 Acer truncatum HOM05D004882 ORTHO05D005551 1.1e-71 275.4 549 42.1
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 9.3e-71 272.3 750 35.9
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 1.2e-70 271.9 718 37.2
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 4.6e-70 270.0 678 35.1
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 5.1e-69 266.5 733 35.5
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 4.3e-68 263.5 561 39.6
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 9.7e-68 262.3 783 34.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 2.2e-67 261.2 504 42.5
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-66 258.5 704 35.2
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 1.8e-66 258.1 716 34.2
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 2.4e-66 257.7 730 36.7
THA.LOC104819516 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 2.0e-65 254.6 354 48.0
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.3e-64 251.9 771 33.3
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 8.5e-64 249.2 738 36.6
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.2e-63 247.3 678 34.5
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 1.6e-62 245.0 725 33.9
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 2.7e-62 244.2 650 36.0
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 3.6e-62 243.8 668 34.7
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 6.1e-62 243.0 695 33.4
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 1.3e-61 241.9 675 35.6
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.9e-61 240.4 681 34.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 6.7e-61 239.6 568 38.0
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 1.5e-60 238.4 709 34.6
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 2.5e-60 237.7 682 32.8
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 7.4e-60 236.1 679 33.1
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 4.8e-59 233.4 730 32.2
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 8.2e-59 232.6 714 32.9
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.4e-58 231.9 661 33.1
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 1.4e-58 231.9 680 35.9
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 2.4e-58 231.1 454 42.3
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 3.1e-58 230.7 546 41.0
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 5.3e-58 229.9 712 34.0
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 5.3e-58 229.9 527 36.2
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 6.9e-58 229.6 723 32.5
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 9.1e-58 229.2 706 35.0
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 7.7e-57 226.1 685 32.3
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 1.0e-56 225.7 681 32.0
Ciclev10030341m.g Citrus clementina HOM05D004882 ORTHO05D005551 1.7e-56 224.9 577 39.0
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 2.2e-56 224.6 522 40.2
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 3.8e-56 223.8 697 34.7
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 1.4e-55 221.9 761 33.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.4e-55 221.9 549 36.6
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 2.5e-55 221.1 686 30.9
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 3.2e-55 220.7 687 31.9
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 7.2e-55 219.5 745 31.3
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 2.7e-54 217.6 516 37.0
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 3.6e-54 217.2 772 31.3
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.4e-53 215.3 641 32.8
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 3.3e-52 210.7 518 35.9
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 4.4e-52 210.3 645 33.0
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.7e-51 208.4 654 32.6
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 4.1e-50 203.8 513 34.7
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.4e-49 200.7 677 31.9
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 1.0e-48 199.1 516 34.5
Oeu008559.3 Olea europaea HOM05D004882 ORTHO05D005551 2.9e-48 197.6 613 35.6
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 3.8e-48 197.2 525 34.9
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.9e-47 194.9 764 29.8
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 9.4e-47 192.6 691 33.1
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 9.4e-47 192.6 727 29.6
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.1e-46 191.4 730 31.1
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 4.7e-46 190.3 611 31.6
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 4.7e-46 190.3 765 29.2
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 4.7e-46 190.3 491 35.6
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 1.8e-45 188.3 735 30.3
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.3e-45 188.0 661 31.2
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.0e-45 187.6 788 28.3
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 5.2e-45 186.8 768 29.9
Lsat_1_v5_gn_5_110520 Lactuca sativa HOM05D004882 ORTHO05D005551 2.0e-44 184.9 642 34.0
TAR381G1068 Trochodendron aralioides HOM05D004882 ORTHO05D005551 2.2e-43 181.4 240 46.2
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 2.8e-43 181.0 287 44.3
DCAR_021925 Daucus carota HOM05D004882 ORTHO05D005551 4.8e-43 180.3 367 38.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 1.8e-42 178.3 606 32.5
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 1.8e-42 178.3 743 31.0
SGA_v2.0_scaffold32G12966 Striga asiatica HOM05D002023 ORTHO05D002049 4.1e-42 177.2 480 36.0
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.2e-41 175.6 804 28.0
vmacro01917 Vaccinium macrocarpon HOM05D004882 ORTHO05D005551 1.1e-39 169.1 203 55.2
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 2.5e-39 167.9 658 33.1
A08p12810 Brassica napus HOM05D004882 ORTHO05D005551 2.1e-38 164.9 137 70.8
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 2.6e-36 157.9 721 30.0
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 4.4e-36 157.1 634 30.1
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 9.7e-36 156.0 816 26.2
CDE01G0159 Ceratophyllum demersum HOM05D004882 ORTHO05D005551 8.2e-35 152.9 638 27.6
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.3e-34 150.2 621 30.3
unitig_21.g20709 Utricularia gibba HOM05D004882 ORTHO05D005551 2.5e-31 141.4 512 34.4
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 4.2e-31 140.6 727 28.6
Os03g0770900 Oryza sativa ssp. japonica HOM05D004882 ORTHO05D005551 6.8e-29 133.3 574 29.8
Zm00001eb213820 Zea mays HOM05D004882 ORTHO05D005551 9.8e-28 129.4 518 28.4
Zm00001eb058870 Zea mays HOM05D004882 ORTHO05D005551 8.3e-27 126.3 501 28.5
RcHm_v2.0_Chr6g0246451 Rosa chinensis HOM05D004882 ORTHO05D005551 4.1e-26 124.0 74 81.1
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 6.5e-24 116.7 405 32.6
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 1.1e-23 115.9 624 27.9
HPP92_019572 Vanilla planifolia HOM05D004882 ORTHO05D005551 1.3e-16 92.4 71 60.6
A02p22620 Brassica napus HOM05D016870 ORTHO05D005551 2.3e-16 91.7 76 68.4
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 1.2e-14 85.9 685 24.4
Rhsim11G0146600 Rhododendron simsii HOM05D004882 ORTHO05D005551 3.4e-12 77.8 124 42.7
Zm00001eb251570 Zea mays HOM05D004882 ORTHO05D005551 2.2e-11 75.1 94 46.8
RcHm_v2.0_Chr6g0246631 Rosa chinensis HOM05D004882 ORTHO05D005551 2.4e-10 71.6 120 44.2
RcHm_v2.0_Chr6g0246641 Rosa chinensis HOM05D004882 ORTHO05D005551 2.0e-09 68.6 40 75.0
SHI04902 Sapria himalayana HOM05D004882 ORTHO05D005551 2.0e-09 68.6 59 59.3
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 7.8e-09 66.6 209 31.6
SEGI_06913 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 2.5e-07 61.6 87 39.1
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 7.3e-07 60.1 103 39.8
SEGI_28562 Sequoiadendron giganteum HOM05D004882 ORTHO05D005551 7.3e-07 60.1 63 49.2
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 6.2e-06 57.0 298 26.5
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 8.0e-06 56.6 42 66.7


User provided reference genes

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