Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 3.4e-175 618.2 316 100.0
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 5.3e-168 594.3 339 90.9
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.3e-166 589.7 337 90.2
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 1.9e-165 585.9 337 89.6
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 1.9e-165 585.9 337 89.6
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 2.5e-165 585.5 336 89.9
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 3.3e-162 575.1 332 89.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 4.8e-161 571.2 336 87.2
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 3.8e-150 535.0 304 91.4
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 2.8e-145 518.8 340 79.4
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 1.7e-142 509.6 337 78.9
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 1.1e-141 506.9 341 78.3
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 9.4e-141 503.8 338 76.9
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 1.6e-140 503.1 337 77.4
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 3.6e-140 501.9 321 79.1
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 8.0e-140 500.7 333 78.1
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 8.0e-140 500.7 338 76.6
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 1.4e-139 500.0 339 75.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 4.0e-139 498.4 339 75.5
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 2.0e-138 496.1 339 74.0
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 4.4e-138 495.0 340 76.8
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 5.7e-138 494.6 320 78.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 2.2e-137 492.7 333 76.0
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 4.8e-137 491.5 340 74.7
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 1.4e-136 490.0 334 74.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 1.4e-136 490.0 341 74.5
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.8e-136 489.6 339 74.6
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.8e-136 489.6 339 74.6
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 2.4e-136 489.2 321 76.6
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 3.1e-136 488.8 339 74.3
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.1e-136 488.8 339 74.9
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 9.1e-136 487.3 335 75.8
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.7e-135 485.7 339 73.5
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 1.7e-134 483.0 322 77.0
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 2.9e-134 482.3 338 72.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.9e-134 482.3 323 75.9
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 3.8e-134 481.9 339 72.9
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 6.5e-134 481.1 340 73.2
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 8.5e-134 480.7 319 77.1
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 8.5e-134 480.7 316 75.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 7.2e-133 477.6 339 73.5
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 9.4e-133 477.2 334 72.5
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.1e-132 476.1 339 74.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 4.7e-132 474.9 336 71.7
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 4.7e-132 474.9 338 73.1
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 6.1e-132 474.6 336 72.9
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 1.8e-131 473.0 339 72.6
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 2.3e-131 472.6 338 72.8
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 2.3e-131 472.6 343 72.0
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.0e-131 471.9 336 72.0
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.0e-131 471.9 337 73.0
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 5.2e-131 471.5 324 73.1
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 6.8e-131 471.1 336 71.7
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.5e-130 469.9 342 71.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 1.5e-130 469.9 340 73.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-130 469.5 338 72.5
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-130 469.5 375 66.9
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 4.4e-130 468.4 342 71.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 2.2e-129 466.1 318 73.0
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 3.7e-129 465.3 337 70.9
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 8.3e-129 464.2 323 71.8
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 1.1e-128 463.8 320 73.8
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.1e-128 463.8 319 74.0
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 1.8e-128 463.0 324 71.9
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 3.1e-128 462.2 330 72.1
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 7.0e-128 461.1 376 66.0
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 7.0e-128 461.1 337 70.9
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.6e-127 459.9 351 69.8
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.7e-127 459.1 320 73.4
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 5.9e-127 458.0 335 71.0
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 5.9e-127 458.0 337 70.3
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 1.3e-126 456.8 334 68.6
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.7e-126 456.4 327 70.6
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 2.3e-126 456.1 341 69.2
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 2.9e-126 455.7 336 70.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 3.8e-126 455.3 382 64.4
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.0e-126 454.9 351 69.5
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 5.0e-126 454.9 339 69.3
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 1.6e-124 449.9 340 68.8
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 2.1e-124 449.5 330 71.8
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 2.8e-124 449.1 339 69.0
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.8e-124 449.1 330 71.8
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 3.6e-124 448.7 379 64.1
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 8.0e-124 447.6 337 69.7
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 1.4e-123 446.8 333 69.1
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 3.0e-123 445.7 320 70.0
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 5.2e-123 444.9 338 68.9
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 5.2e-123 444.9 320 70.0
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 4.9e-121 438.3 337 68.2
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 1.1e-120 437.2 408 60.5
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 5.0e-118 428.3 326 69.3
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 4.3e-117 425.2 318 67.6
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.9e-115 417.5 316 66.5
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 1.3e-113 413.7 349 61.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.9e-112 409.8 339 64.9
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 2.5e-109 399.4 349 59.9
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 1.6e-108 396.7 332 63.3
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 2.9e-105 386.0 345 59.1
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 8.6e-102 374.4 250 76.4
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 3.1e-99 365.9 248 73.8
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 8.9e-99 364.4 249 75.9
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 9.9e-98 360.9 250 72.8
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.6e-95 353.6 243 73.3
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 6.6e-94 348.2 324 59.0
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 1.1e-93 347.4 339 60.5
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 8.1e-92 341.3 313 59.7
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 6.8e-91 338.2 376 54.5
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.4e-88 329.7 324 57.4
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 3.0e-86 322.8 242 67.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 1.3e-84 317.4 212 77.4
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.1e-83 314.3 315 55.2
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 6.4e-73 278.5 198 71.7
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.4e-72 277.3 214 68.7
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 4.8e-60 235.7 343 42.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.5e-56 223.4 359 42.1
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.3e-54 217.6 242 48.8
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.3e-54 217.6 263 45.2
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 5.7e-53 212.2 181 60.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 1.8e-43 180.6 134 67.9
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 7.7e-42 175.3 136 66.9
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.1e-37 161.4 138 65.2
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 3.3e-37 159.8 138 64.5
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 4.4e-37 159.5 130 64.6
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 3.7e-36 156.4 113 70.8
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 4.8e-36 156.0 140 62.9
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 9.1e-35 151.8 102 74.5
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-33 147.5 131 63.4
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-33 147.5 131 63.4
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.9e-32 144.1 131 61.8
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.0e-30 138.3 199 47.7
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 5.2e-30 136.0 72 95.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-27 128.3 148 43.9
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 9.4e-24 115.2 66 92.4
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 8.8e-22 108.6 101 59.4
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 5.7e-21 105.9 78 64.1
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 9.8e-21 105.1 60 85.0
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.7e-20 104.4 72 69.4
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 4.8e-20 102.8 196 39.8
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 7.0e-19 99.0 67 74.6
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 1.2e-18 98.2 61 80.3
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.6e-18 97.8 63 74.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.2e-16 89.7 80 61.2
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 3.0e-14 83.6 50 84.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 3.0e-14 83.6 51 80.4
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 2.0e-10 70.9 60 60.0
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 3.6e-07 60.1 147 30.6
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 4.7e-07 59.7 55 54.5


User provided reference genes

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