Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 1.3e-128 463.0 229 100.0
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 1.2e-100 370.2 192 95.8
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 3.1e-93 345.5 185 94.1
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 6.5e-91 337.8 210 83.8
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 1.9e-90 336.3 209 83.3
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 5.5e-90 334.7 207 82.6
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 9.4e-90 334.0 197 87.8
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.7e-89 332.4 208 82.7
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 2.7e-89 332.4 207 82.6
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 7.9e-89 330.9 209 81.3
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 1.8e-88 329.7 209 80.9
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 2.3e-88 329.3 245 72.7
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 2.0e-87 326.2 192 88.0
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 7.4e-87 324.3 208 80.3
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-86 323.6 192 87.0
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 8.2e-86 320.9 209 80.9
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 5.9e-84 314.7 201 79.1
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 7.7e-84 314.3 209 79.4
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 1.8e-80 303.1 209 73.2
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 1.2e-76 290.4 203 73.4
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 5.0e-75 285.0 202 70.8
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 1.6e-73 280.0 205 76.1
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 3.6e-73 278.9 192 74.0
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 1.4e-72 276.9 191 77.0
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 1.4e-72 276.9 191 77.0
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 2.3e-72 276.2 213 68.1
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 3.0e-72 275.8 205 69.3
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 3.0e-72 275.8 203 69.5
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 5.2e-72 275.0 208 66.3
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 6.7e-72 274.6 205 67.8
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 8.8e-72 274.2 207 68.6
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 8.8e-72 274.2 206 70.4
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.6e-71 272.7 204 66.7
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 3.3e-71 272.3 203 69.0
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 4.4e-71 271.9 206 67.0
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 5.7e-71 271.6 204 68.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 7.4e-71 271.2 203 70.4
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 9.7e-71 270.8 204 68.6
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 9.7e-71 270.8 203 68.5
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 1.3e-70 270.4 204 68.6
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.3e-70 270.4 206 66.5
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 2.2e-70 269.6 208 65.4
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 4.8e-70 268.5 194 71.1
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 1.4e-69 266.9 204 67.6
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 1.8e-69 266.5 208 67.3
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.8e-69 266.5 211 64.9
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 2.4e-69 266.2 194 69.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 3.1e-69 265.8 206 68.4
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 7.0e-69 264.6 195 69.2
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 7.0e-69 264.6 195 70.8
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 9.1e-69 264.2 206 66.0
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 9.1e-69 264.2 192 71.4
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.2e-68 263.8 204 67.2
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 1.2e-68 263.8 204 64.7
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 2.0e-68 263.1 206 68.0
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 2.0e-68 263.1 206 68.0
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 2.0e-68 263.1 210 64.3
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 2.6e-68 262.7 231 59.3
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.6e-68 262.7 210 64.8
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 5.9e-68 261.5 206 65.0
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 1.0e-67 260.8 195 67.7
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 1.3e-67 260.4 206 63.6
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 1.7e-67 260.0 209 64.6
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 2.2e-67 259.6 208 64.4
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 3.8e-67 258.8 198 66.7
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 8.5e-67 257.7 209 66.0
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 8.5e-67 257.7 203 66.5
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 1.1e-66 257.3 205 63.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 1.5e-66 256.9 190 67.4
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 1.9e-66 256.5 189 68.3
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 1.9e-66 256.5 201 64.2
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 2.5e-66 256.1 189 67.7
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 7.2e-66 254.6 206 65.0
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.2e-65 253.8 191 66.5
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 1.6e-65 253.4 199 64.8
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 1.6e-65 253.4 204 63.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 2.1e-65 253.1 193 65.8
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.6e-65 252.3 199 64.8
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 4.7e-65 251.9 208 63.5
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 4.7e-65 251.9 205 62.0
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-64 250.4 190 65.8
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 1.8e-64 250.0 202 64.9
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.8e-64 250.0 204 62.3
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.3e-64 249.6 197 65.0
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 2.3e-64 249.6 211 63.5
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 4.0e-64 248.8 204 63.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 4.0e-64 248.8 208 61.5
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 2.0e-63 246.5 213 60.6
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 4.4e-63 245.4 205 64.4
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 4.4e-63 245.4 198 62.6
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 4.4e-63 245.4 193 63.2
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 7.5e-63 244.6 190 65.8
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 7.5e-63 244.6 223 57.0
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 9.7e-63 244.2 205 62.4
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.2e-62 243.0 206 62.1
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 3.7e-62 242.3 210 61.9
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 6.3e-62 241.5 204 61.3
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 8.3e-62 241.1 194 66.5
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.1e-61 240.7 215 62.8
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 3.5e-60 235.7 201 59.2
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 3.6e-57 225.7 216 56.0
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 2.3e-56 223.0 202 57.9
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 1.7e-54 216.9 138 82.6
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 4.8e-54 215.3 205 58.5
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 8.3e-54 214.5 187 61.0
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.1e-53 214.2 200 56.5
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.8e-53 213.4 202 55.9
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 5.0e-51 205.3 211 54.5
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 1.8e-48 196.8 198 51.0
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 2.3e-48 196.4 193 52.3
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 4.9e-46 188.7 197 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 8.3e-46 188.0 187 52.9
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.8e-45 186.8 184 54.3
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 9.2e-45 184.5 163 58.3
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 2.7e-44 183.0 196 50.5
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 4.5e-44 182.2 186 54.3
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.5e-42 176.4 160 58.1
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 1.5e-39 167.2 183 47.5
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 4.4e-39 165.6 153 61.4
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 1.6e-36 157.1 127 66.1
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.7e-36 156.4 143 60.8
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 2.2e-30 136.7 120 58.3
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.7e-30 136.0 71 95.8
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.0e-27 127.9 149 49.7
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 1.5e-26 124.0 118 55.1
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.4e-21 107.5 195 35.4
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 2.4e-21 106.7 184 33.7
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 3.5e-20 102.8 58 81.0
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 1.0e-19 101.3 186 37.1
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 4.0e-16 89.4 45 93.3
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.8e-16 88.6 80 53.8
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 8.7e-11 71.6 64 62.5
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 8.1e-09 65.1 70 55.7
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 4.0e-08 62.8 68 54.4
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 9.0e-08 61.6 68 55.9
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 4.4e-07 59.3 38 76.3
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 5.8e-07 58.9 38 78.9
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.8e-06 56.2 50 52.0


User provided reference genes

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