Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52164 Brassica carinata HOM05D006516 ORTHO05D008083 2.5e-168 595.5 326 100.0
C01p05200 Brassica napus HOM05D006516 ORTHO05D008083 9.7e-149 530.4 331 88.2
AL7G18070 Arabidopsis lyrata HOM05D006516 ORTHO05D008083 6.5e-145 517.7 342 88.3
AT4G33480 Arabidopsis thaliana HOM05D006516 ORTHO05D008083 2.3e-142 509.2 339 83.8
CARHR241560 Cardamine hirsuta HOM05D006516 ORTHO05D008083 2.3e-142 509.2 340 87.9
BolC1t00500H Brassica oleracea HOM05D006516 ORTHO05D008021 1.1e-141 506.9 315 87.9
Carub.0007s0699 Capsella rubella HOM05D006516 ORTHO05D008083 1.3e-140 503.4 339 85.5
BraA01t00462Z Brassica rapa HOM05D006516 ORTHO05D008083 4.8e-132 474.9 292 89.7
A01p04790 Brassica napus HOM05D006516 ORTHO05D008083 5.7e-125 451.4 278 91.7
Thhalv10025682m.g Eutrema salsugineum HOM05D006516 ORTHO05D008083 4.1e-123 445.3 295 86.8
THA.LOC104804401 Tarenaya hassleriana HOM05D006516 ORTHO05D008083 4.4e-109 398.7 346 69.9
Thecc.01G139400 Theobroma cacao HOM05D006516 ORTHO05D008083 1.0e-105 387.5 339 68.1
RcHm_v2.0_Chr2g0122781 Rosa chinensis HOM05D006516 ORTHO05D008083 1.1e-102 377.5 335 66.9
Atru.chr4.1049 Acer truncatum HOM05D006516 ORTHO05D008083 1.4e-102 377.1 322 66.1
Ciclev10001875m.g Citrus clementina HOM05D006516 ORTHO05D008083 1.3e-100 370.5 218 84.9
Prupe.4G278200 Prunus persica HOM05D006516 ORTHO05D008083 1.3e-100 370.5 340 65.3
Cpa.g.sc37.17 Carica papaya HOM05D006516 ORTHO05D008083 2.2e-100 369.8 347 65.1
CiPaw.03G117200 Carya illinoinensis HOM05D006516 ORTHO05D008083 2.9e-100 369.4 337 65.0
CANSAT01G0949 Cannabis sativa HOM05D006516 ORTHO05D008083 3.7e-100 369.0 223 81.6
Gohir.D04G033500 Gossypium hirsutum HOM05D006516 ORTHO05D008083 1.4e-99 367.1 342 64.9
Gohir.A05G381800 Gossypium hirsutum HOM05D006516 ORTHO05D008083 3.2e-99 365.9 342 64.9
FAN26G1784 Fragaria x ananassa HOM05D006516 ORTHO05D008083 9.2e-99 364.4 237 74.7
CsaV3_2G019760 Cucumis sativus L. HOM05D006516 ORTHO05D008083 2.7e-98 362.8 331 64.4
Dinv30343 Davidia involucrata HOM05D006516 ORTHO05D008083 2.7e-98 362.8 336 63.7
Manes.12G147400 Manihot esculenta HOM05D006516 ORTHO05D008083 2.7e-98 362.8 343 64.1
Sed0013830 Sechium edule HOM05D006516 ORTHO05D008083 2.7e-98 362.8 215 82.8
MELO3C023197.2 Cucumis melo HOM05D006516 ORTHO05D008083 6.0e-98 361.7 333 65.2
FAN28G2638 Fragaria x ananassa HOM05D006516 ORTHO05D008083 7.8e-98 361.3 237 74.3
Eucgr.I00111 Eucalyptus grandis HOM05D006516 ORTHO05D008083 1.0e-97 360.9 214 81.3
TAR628G0816 Trochodendron aralioides HOM05D006516 ORTHO05D008083 1.0e-97 360.9 219 78.5
MD00G1064700 Malus domestica HOM05D006516 ORTHO05D008083 1.3e-97 360.5 340 64.4
Solyc04g015480.3 Solanum lycopersicum HOM05D006516 ORTHO05D008083 5.0e-97 358.6 321 62.3
Potri.007G099900 Populus trichocarpa HOM05D006516 ORTHO05D008083 8.6e-97 357.8 211 79.6
Sabra07G0082800 Salix brachista HOM05D006516 ORTHO05D008083 8.6e-97 357.8 223 76.7
CSS0037144 Camellia sinensis var. sinensis HOM05D006516 ORTHO05D008083 1.1e-96 357.5 225 77.8
PGR119G1413 Punica granatum HOM05D006516 ORTHO05D008083 3.3e-96 355.9 235 76.6
Sp7g31210 Schrenkiella parvula HOM05D006516 ORTHO05D008083 5.6e-96 355.1 252 84.5
EL10Ac4g09645 Beta vulgaris HOM05D006516 ORTHO05D008083 7.3e-96 354.8 214 77.6
Sopen04g007550 Solanum pennellii HOM05D006516 ORTHO05D008083 7.3e-96 354.8 321 61.7
Oeu011021.1 Olea europaea HOM05D006516 ORTHO05D008083 6.2e-95 351.7 267 67.8
AUR62000533 Chenopodium quinoa HOM05D006516 ORTHO05D008083 1.4e-94 350.5 327 63.6
Sc06g0006730 Simmondsia chinensis HOM05D006516 ORTHO05D008083 1.4e-94 350.5 234 71.8
MSTRG.23495 Avicennia marina HOM05D006516 ORTHO05D008083 3.1e-94 349.4 211 79.1
FAN19G1952 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.1e-94 349.4 220 77.7
TWI31G0808 Tripterygium wilfordii HOM05D006516 ORTHO05D008083 5.2e-94 348.6 314 62.1
FAN23G2617 Fragaria x ananassa HOM05D006516 ORTHO05D008083 2.9e-92 342.8 235 72.8
Lsat_1_v5_gn_5_69121 Lactuca sativa HOM05D006516 ORTHO05D008083 3.7e-92 342.4 214 77.6
Migut.H00817 Erythranthe guttata HOM05D006516 ORTHO05D008083 6.4e-92 341.7 210 78.6
Aqoxy6G00267 Aquilegia oxysepala HOM05D006516 ORTHO05D008083 8.3e-92 341.3 234 69.2
QL10p040847 Quercus lobata HOM05D006516 ORTHO05D008083 8.3e-92 341.3 214 80.4
Cc02_g33920 Coffea canephora HOM05D006516 ORTHO05D008083 1.1e-91 340.9 202 81.7
HanXRQChr15g0469261 Helianthus annuus HOM05D006516 ORTHO05D008083 1.1e-91 340.9 227 72.7
CDE08G1595 Ceratophyllum demersum HOM05D006516 ORTHO05D008083 2.4e-91 339.7 214 74.8
DCAR_019988 Daucus carota HOM05D006516 ORTHO05D008083 2.1e-90 336.7 232 70.3
GSVIVG01022337001 Vitis vinifera HOM05D006516 ORTHO05D008083 3.5e-90 335.9 196 84.7
ECA233G3512 Erigeron canadensis HOM05D000595 ORTHO05D006275 7.8e-90 334.7 214 75.2
PSO170G3530 Papaver somniferum HOM05D006516 ORTHO05D008083 7.8e-90 334.7 234 71.8
Nitab4.5_0001663g0100 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.3e-88 329.3 357 54.6
arahy.Tifrunner.gnm1.ann1.YP7URC Arachis hypogaea HOM05D006516 ORTHO05D008083 2.4e-86 323.2 209 72.2
Haze_25362 Corylus avellana HOM05D006516 ORTHO05D008083 3.1e-86 322.8 223 75.3
Actinidia06588 Actinidia chinensis HOM05D006516 ORTHO05D008083 1.5e-85 320.5 325 57.5
Duzib147G1587 Durio zibethinus HOM05D006516 ORTHO05D008083 2.6e-85 319.7 349 56.2
unitig_899.g15157 Utricularia gibba HOM05D006516 ORTHO05D008083 3.4e-85 319.3 216 70.4
Actinidia20043 Actinidia chinensis HOM05D006516 ORTHO05D008083 5.8e-85 318.5 328 57.0
Glyma.05G194700 Glycine max HOM05D006516 ORTHO05D008083 5.8e-85 318.5 301 60.8
Lalb_Chr13g0296721 Lupinus albus HOM05D006516 ORTHO05D008083 2.9e-84 316.2 223 68.2
SGA_v2.0_scaffold54G19604 Striga asiatica HOM05D006516 ORTHO05D008083 1.1e-83 314.3 242 63.6
Aa31sc146G60 Aethionema arabicum HOM05D006516 ORTHO05D008083 2.4e-83 313.2 248 73.4
Ah.06g188920 Amaranthus hybridus HOM05D006516 ORTHO05D008083 7.1e-83 311.6 236 68.2
Cfa002190 Carpinus fangiana HOM05D006516 ORTHO05D008083 7.1e-83 311.6 418 50.0
Lj4g0011477 Lotus japonicus HOM05D006516 ORTHO05D008083 7.1e-83 311.6 211 72.5
arahy.Tifrunner.gnm1.ann1.8KJ0MH Arachis hypogaea HOM05D006516 ORTHO05D008083 1.6e-82 310.5 196 73.0
Hund07224 Selenicereus undatus HOM05D006516 ORTHO05D008083 1.6e-82 310.5 309 53.1
PSO528G0185 Papaver somniferum HOM05D006516 ORTHO05D008083 2.7e-82 309.7 194 78.9
Gorai.012G037800 Gossypium raimondii HOM05D006516 ORTHO05D008083 3.5e-82 309.3 307 61.9
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 3.0e-81 306.2 184 77.7
Lalb_Chr08g0238111 Lupinus albus HOM05D006516 ORTHO05D008083 6.6e-81 305.1 216 69.4
PSO063G7430 Papaver somniferum HOM05D006516 ORTHO05D008083 8.7e-81 304.7 194 77.8
FvH4_1g25120 Fragaria vesca HOM05D006516 ORTHO05D008083 1.1e-80 304.3 174 83.3
Lj1g0010918 Lotus japonicus HOM05D006516 ORTHO05D008083 1.9e-80 303.5 213 71.8
CAN.G676.43 Capsicum annuum HOM05D006516 ORTHO05D008083 5.6e-80 302.0 215 70.2
Medtr8g094200 Medicago truncatula HOM05D006516 ORTHO05D008083 4.7e-79 298.9 211 67.3
PGSC0003DMG400027234 Solanum tuberosum HOM05D006516 ORTHO05D008083 4.7e-79 298.9 353 51.6
arahy.Tifrunner.gnm1.ann1.I5MJF2 Arachis hypogaea HOM05D006516 ORTHO05D008083 6.9e-78 295.0 211 67.8
Glyma.06G156800 Glycine max HOM05D006516 ORTHO05D008083 2.0e-77 293.5 214 69.6
VMungo1309G1214 Vigna mungo HOM05D006516 ORTHO05D008083 1.3e-76 290.8 223 66.8
AUR62006880 Chenopodium quinoa HOM05D006516 ORTHO05D008083 6.4e-76 288.5 418 47.4
COL.COLO4_12072 Corchorus olitorius HOM05D006516 ORTHO05D008083 6.4e-76 288.5 339 51.0
Psat5g086920 Pisum sativum HOM05D006516 ORTHO05D008083 1.9e-75 287.0 219 65.8
TPR.G37339 Trifolium pratense HOM05D006516 ORTHO05D008083 3.2e-75 286.2 208 65.4
Ca_17618_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 7.1e-75 285.0 202 66.3
arahy.Tifrunner.gnm1.ann1.5F6SWA Arachis hypogaea HOM05D006516 ORTHO05D008083 1.6e-74 283.9 225 64.0
Zm00001eb434490 Zea mays HOM05D006516 ORTHO05D008083 4.3e-72 275.8 211 61.6
Psat7g044240 Pisum sativum HOM05D006516 ORTHO05D008083 9.0e-70 268.1 318 47.8
CiPaw.04G078600 Carya illinoinensis HOM05D006516 ORTHO05D008083 1.9e-67 260.4 338 52.4
Ca_16991_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.0e-65 254.6 357 48.7
Ca_17019_v3 Cicer arietinum L. HOM05D006516 ORTHO05D008083 1.0e-65 254.6 357 48.7
Medtr3g096860 Medicago truncatula HOM05D006516 ORTHO05D008083 3.9e-65 252.7 288 53.8
Phvul.009G153500 Phaseolus vulgaris HOM05D006516 ORTHO05D008083 6.2e-63 245.4 188 66.0
Mapoly0149s0016 Marchantia polymorpha HOM05D006516 ORTHO05D008083 2.5e-56 223.4 223 51.6
TPR.G33574 Trifolium pratense HOM05D006516 ORTHO05D008083 3.3e-56 223.0 172 62.8
ATR0138G020 Amborella trichopoda HOM05D006516 ORTHO05D008083 7.4e-56 221.9 152 66.4
Pp3c3_32640 Physcomitrium patens HOM05D006516 ORTHO05D008083 2.2e-52 210.3 218 50.9
AagrBONN_evm.TU.Sc2ySwM_369.382 Anthoceros agrestis HOM05D006516 ORTHO05D008083 1.0e-49 201.4 228 48.7
Peaxi162Scf01713g00018 Petunia axillaris HOM05D006516 ORTHO05D008083 1.3e-49 201.1 239 49.4
Nitab4.5_0000733g0220 Nicotiana tabacum HOM05D006516 ORTHO05D008083 3.9e-49 199.5 292 44.2
Nn1g08886 Nelumbo nucifera HOM05D006516 ORTHO05D008083 1.9e-48 197.2 242 49.6
Rhsim10G0127700 Rhododendron simsii HOM05D006516 ORTHO05D008083 1.2e-45 188.0 191 51.8
MBI06_g45441_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 6.5e-44 182.2 300 41.7
ClCG02G000090 Citrullus lanatus HOM05D006516 ORTHO05D008083 5.5e-43 179.1 126 66.7
Aa31sc146G50 Aethionema arabicum HOM05D006516 ORTHO05D008083 1.3e-39 167.9 88 92.0
Nn1g08902 Nelumbo nucifera HOM05D006516 ORTHO05D008083 2.0e-37 160.6 94 83.0
Hma1.2p1_1551F.1_g290160 Hydrangea macrophylla HOM05D006516 ORTHO05D008083 5.3e-30 136.0 76 80.3
CBR_g51961 Chara braunii HOM05D006516 ORTHO05D008083 4.7e-26 122.9 233 34.3
Peaxi162Scf01713g00017 Petunia axillaris HOM05D006516 ORTHO05D008083 4.4e-24 116.3 67 85.1
Sp7g31200 Schrenkiella parvula HOM05D006516 ORTHO05D008083 9.7e-24 115.2 64 96.9
Nn1g08901 Nelumbo nucifera HOM05D003028 ORTHO05D003465 1.1e-19 101.7 154 40.9
PRCOL_00004760 Prasinoderma coloniale HOM05D006516 ORTHO05D008083 1.0e-17 95.1 164 31.1
MCO05G028 Micromonas commoda HOM05D006516 ORTHO05D008083 1.2e-16 91.7 175 34.3
COL.COLO4_30311 Corchorus olitorius HOM05D000221 ORTHO05D008083 2.2e-12 77.4 48 79.2
FAN28G1699 Fragaria x ananassa HOM05D006516 ORTHO05D008083 3.8e-12 76.6 49 81.6
MBI06_g33106_MAGBIO Magnolia biondii HOM05D006516 ORTHO05D008083 9.4e-11 72.0 67 53.7
ATR0138G010 Amborella trichopoda HOM05D006516 ORTHO05D008083 3.1e-06 57.0 35 82.9


User provided reference genes

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