Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 2530.4 1273 100.0
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1973.7 1274 81.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1971.1 1274 81.4
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1901.7 1279 78.3
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1899.8 1275 78.7
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1881.7 1278 77.6
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1854.0 1277 77.1
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1845.9 1278 76.4
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1833.2 1279 76.1
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1830.1 1278 75.6
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1675.6 1270 68.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1654.4 1307 67.9
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1509.2 1263 61.9
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1493.8 1263 61.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1492.2 1263 61.6
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1488.4 1264 61.6
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1476.8 1263 60.8
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 1267 60.4
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1264 60.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1466.1 1267 60.3
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1460.3 1265 60.6
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1266 59.8
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1455.3 1264 60.4
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1454.9 1263 59.7
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1451.0 1261 59.8
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1445.6 1263 59.9
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 1443.7 1263 60.0
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1443.3 1264 60.3
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1439.9 1266 59.2
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1437.2 1264 59.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1434.9 1264 59.4
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1431.0 1262 58.7
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1429.5 1264 59.7
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 1283 59.5
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1428.7 1283 59.5
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1427.9 1329 56.9
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1426.4 1264 59.1
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1425.2 1264 58.7
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1422.5 1264 58.5
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1418.7 1264 59.2
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1417.5 1319 58.0
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1417.5 1264 58.9
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1408.7 1273 58.7
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1408.3 1248 59.5
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1406.3 1267 58.5
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1404.8 1261 58.4
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1402.5 1263 57.2
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1401.0 1266 58.6
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1401.0 1263 58.8
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1400.2 1266 58.5
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1394.8 1264 58.5
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1389.4 952 71.5
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1388.6 1264 57.8
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1385.2 1262 57.5
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1375.5 1352 55.0
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1373.2 1263 57.8
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1372.1 1249 58.0
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1369.0 1264 57.4
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1367.1 1264 57.4
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1364.0 1251 56.8
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1362.1 1261 57.0
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1360.1 1263 57.2
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1358.6 1261 56.4
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1356.7 1261 56.4
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1353.2 1261 56.0
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1350.1 1259 56.1
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1347.4 1261 57.3
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1344.3 1262 56.5
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1342.0 1262 56.3
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1335.5 1261 57.0
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1331.6 1258 56.0
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1329.7 1264 55.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1325.1 1265 55.2
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1324.7 1274 56.8
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1321.2 1266 55.5
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1319.7 1264 55.2
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1319.7 1188 58.8
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1313.5 1263 55.7
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1312.0 1265 56.3
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1310.8 1277 55.6
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1310.4 1341 53.7
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1308.5 1264 54.7
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1302.7 1264 55.1
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1301.2 1260 54.1
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1285.0 1263 55.8
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1265.8 851 72.5
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1258.0 855 71.7
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1246.9 851 72.2
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1240.7 1156 57.1
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1211.4 801 73.8
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1181.0 1262 51.0
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1113.6 789 68.8
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 1.2e-300 1036.9 1281 45.1
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 1.3e-294 1016.9 950 56.7
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 1.1e-288 997.3 522 93.1
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 5.6e-285 984.9 1266 43.9
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 5.3e-283 978.4 999 53.6
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 3.9e-270 935.6 1281 43.4
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.5e-261 907.1 633 70.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 4.2e-256 889.0 484 89.3
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 5.0e-249 865.5 464 89.9
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 3.2e-248 862.8 464 89.7
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 9.4e-248 861.3 467 89.5
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 1.6e-247 860.5 510 83.7
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 4.6e-247 859.0 988 50.2
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 3.4e-242 842.8 464 87.9
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 3.6e-239 832.8 482 84.9
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 2.6e-237 826.6 1158 43.9
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.8e-233 812.8 516 74.6
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 1.9e-232 810.4 659 61.5
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.8e-228 796.6 499 80.2
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 3.4e-205 719.9 470 71.9
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 9.8e-205 718.4 465 78.1
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 2.1e-199 700.7 464 75.9
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 4.9e-196 689.5 453 72.6
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 4.4e-189 666.4 459 68.0
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.9e-187 661.0 893 44.0
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 3.6e-183 646.7 452 68.4
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 7.8e-170 602.4 448 64.1
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 1.3e-151 542.0 366 69.7
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 2.9e-148 530.8 366 68.9
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 3.0e-145 520.8 281 90.7
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 5.9e-133 479.9 637 44.0
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 2.3e-129 468.0 742 41.6
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.8e-126 458.4 955 32.9
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 3.2e-123 447.6 609 44.3
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 3.8e-116 424.1 613 42.1
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 1.5e-115 422.2 238 83.6
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 6.7e-113 413.3 285 69.1
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.1e-110 404.1 271 72.7
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 5.7e-104 383.6 244 75.4
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 2.8e-103 381.3 215 83.3
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 8.3e-103 379.8 265 70.6
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.7e-100 372.1 235 77.0
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 7.5e-80 303.5 302 54.6
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 8.3e-71 273.5 155 80.6
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 2.9e-55 221.9 230 52.6
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 2.3e-52 212.2 272 45.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 1.3e-47 196.4 207 53.6
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.9e-47 195.3 156 60.3
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 7.9e-45 187.2 179 59.2
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 8.1e-42 177.2 122 62.3
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 4.9e-39 167.9 155 58.1
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.0e-36 160.2 110 72.7
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.5e-35 155.6 179 51.4
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 5.8e-32 144.4 106 69.8
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 3.8e-31 141.7 97 73.2
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 5.5e-30 137.9 85 72.9
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 3.0e-28 132.1 83 72.3
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 1.9e-27 129.4 137 51.8
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 1.9e-27 129.4 137 52.6
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 1.5e-24 119.8 85 64.7
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.4e-22 113.2 85 62.4
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 6.1e-21 107.8 55 85.5
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 1.4e-17 96.7 62 75.8
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 7.7e-16 90.9 59 66.1
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 8.5e-15 87.4 81 53.1
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 2.5e-14 85.9 77 55.8
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 3.2e-14 85.5 74 56.8
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 4.2e-14 85.1 53 79.2
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 2.1e-13 82.8 76 59.2
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 5.1e-12 78.2 51 66.7
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 1.1e-11 77.0 75 57.3
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.3e-11 75.5 74 51.4
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 5.7e-11 74.7 46 69.6
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 9.7e-11 73.9 41 80.5
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.1e-09 70.5 79 51.9
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 2.0e-08 66.2 48 68.8
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 8.5e-07 60.8 44 59.1
AL5G20110 Arabidopsis lyrata HOM05D004198 ORTHO05D080677 1.9e-06 59.7 38 76.3


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