Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g51258 Brassica carinata HOM05D003215 ORTHO05D003735 1.7e-50 202.2 93 100.0
BcaC09g51256 Brassica carinata HOM05D003215 ORTHO05D003735 7.2e-49 196.8 93 97.8
C01p15060 Brassica napus HOM05D003215 ORTHO05D003735 7.2e-49 196.8 93 97.8
BolC1t01455H Brassica oleracea HOM05D003215 ORTHO05D003735 7.2e-49 196.8 93 97.8
BcaB06g26361 Brassica carinata HOM05D003215 ORTHO05D003735 6.3e-45 183.7 92 88.0
BcaB06g27584 Brassica carinata HOM05D003215 ORTHO05D003735 1.4e-44 182.6 92 89.1
BcaNung03841 Brassica carinata HOM05D003215 ORTHO05D003735 1.4e-44 182.6 92 89.1
Sp7g00890 Schrenkiella parvula HOM05D003215 ORTHO05D003735 1.2e-43 179.5 92 87.0
BcaC02g08984 Brassica carinata HOM05D003215 ORTHO05D003735 1.6e-43 179.1 92 84.8
BolC4t26400H Brassica oleracea HOM05D003215 ORTHO05D003735 1.6e-43 179.1 92 84.8
A04p14060 Brassica napus HOM05D003215 ORTHO05D003735 2.7e-43 178.3 92 84.8
BraA04t17067Z Brassica rapa HOM05D003215 ORTHO05D003735 2.7e-43 178.3 92 84.8
BcaC05g28060 Brassica carinata HOM05D003215 ORTHO05D003735 1.3e-42 176.0 91 84.6
C05p40730 Brassica napus HOM05D003215 ORTHO05D003735 1.3e-42 176.0 91 84.6
BolC5t32818H Brassica oleracea HOM05D003215 ORTHO05D003735 1.3e-42 176.0 91 84.6
Thhalv10027663m.g Eutrema salsugineum HOM05D003215 ORTHO05D003735 6.6e-42 173.7 92 81.5
CARHR213350 Cardamine hirsuta HOM05D003215 ORTHO05D003735 6.2e-40 167.2 92 78.3
AL7G48530 Arabidopsis lyrata HOM05D003215 ORTHO05D003735 8.0e-40 166.8 92 77.2
AT5G41020 Arabidopsis thaliana HOM05D003215 ORTHO05D003735 1.4e-39 166.0 92 77.2
BcaNung03843 Brassica carinata HOM05D003215 ORTHO05D003735 3.1e-39 164.9 87 87.4
Carub.0007s3447 Capsella rubella HOM05D003215 ORTHO05D003735 2.9e-37 158.3 92 75.0
Aa31LG9G750 Aethionema arabicum HOM05D003215 ORTHO05D003735 1.1e-36 156.4 92 71.7
Aa31LG9G1030 Aethionema arabicum HOM05D003215 ORTHO05D003735 1.2e-35 152.9 92 71.7
Aa31LG9G1040 Aethionema arabicum HOM05D003215 ORTHO05D003735 2.7e-35 151.8 91 70.3
THA.LOC104815051 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.8e-31 139.0 91 63.7
THA.LOC104816721 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.8e-31 139.0 91 63.7
Actinidia34779 Actinidia chinensis HOM05D003215 ORTHO05D003735 1.2e-30 136.3 89 67.4
Oeu050248.1 Olea europaea HOM05D003215 ORTHO05D003735 1.2e-30 136.3 93 65.6
Oeu046322.1 Olea europaea HOM05D003215 ORTHO05D003735 9.8e-30 133.3 93 63.4
Cfa013261 Carpinus fangiana HOM05D003215 ORTHO05D003735 3.7e-29 131.3 89 61.8
Prupe.6G210800 Prunus persica HOM05D003215 ORTHO05D003735 3.7e-29 131.3 89 62.9
MSTRG.4371 Avicennia marina HOM05D003215 ORTHO05D003735 6.4e-29 130.6 93 63.4
Haze_21721 Corylus avellana HOM05D003215 ORTHO05D003735 8.3e-29 130.2 89 60.7
AUR62027593 Chenopodium quinoa HOM05D003215 ORTHO05D003735 1.1e-28 129.8 89 65.2
AUR62030249 Chenopodium quinoa HOM05D003215 ORTHO05D003735 1.1e-28 129.8 89 65.2
Lj4C675G2 Lonicera japonica HOM05D003215 ORTHO05D003735 1.1e-28 129.8 89 60.7
Lj4C665T1 Lonicera japonica HOM05D003215 ORTHO05D003735 1.4e-28 129.4 89 60.7
EL10As2g23156 Beta vulgaris HOM05D003215 ORTHO05D003735 1.9e-28 129.0 88 67.0
TAR626G0419 Trochodendron aralioides HOM05D003215 ORTHO05D003735 1.9e-28 129.0 91 61.5
DCAR_004337 Daucus carota HOM05D003215 ORTHO05D003735 2.4e-28 128.6 93 60.2
DCAR_024215 Daucus carota HOM05D003215 ORTHO05D003735 2.4e-28 128.6 93 60.2
DCAR_024216 Daucus carota HOM05D003215 ORTHO05D003735 2.4e-28 128.6 93 60.2
SalBow6G4532 Salvia bowleyana HOM05D003215 ORTHO05D003735 3.2e-28 128.3 93 62.4
DCAR_008318 Daucus carota HOM05D003215 ORTHO05D003735 7.1e-28 127.1 93 60.2
Haze_25499 Corylus avellana HOM05D003215 ORTHO05D003735 9.2e-28 126.7 89 58.4
Cpa.g.sc65.22 Carica papaya HOM05D003215 ORTHO05D003735 1.2e-27 126.3 93 60.2
Nn7g37196 Nelumbo nucifera HOM05D003215 ORTHO05D003735 1.6e-27 125.9 93 59.1
QL09p047318 Quercus lobata HOM05D003215 ORTHO05D003735 1.6e-27 125.9 92 59.8
TWI18G1003 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 1.6e-27 125.9 93 59.1
Hma1.2p1_0892F.1_g233410 Hydrangea macrophylla HOM05D003215 ORTHO05D003735 2.1e-27 125.6 93 59.1
TWI31G0331 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 3.5e-27 124.8 93 57.0
unitig_52.g17692 Utricularia gibba HOM05D003215 ORTHO05D003735 3.5e-27 124.8 89 60.7
Rhsim09G0130800 Rhododendron simsii HOM05D003215 ORTHO05D003735 4.6e-27 124.4 89 58.4
Solyc08g066190.2 Solanum lycopersicum HOM05D003215 ORTHO05D003735 4.6e-27 124.4 93 59.1
Sopen08g019870 Solanum pennellii HOM05D003215 ORTHO05D003735 4.6e-27 124.4 93 59.1
TWI31G0413 Tripterygium wilfordii HOM05D003215 ORTHO05D003735 4.6e-27 124.4 93 58.1
CSS0012061 Camellia sinensis var. sinensis HOM05D003215 ORTHO05D003735 6.0e-27 124.0 90 58.9
HanXRQChr11g0328481 Helianthus annuus HOM05D003215 ORTHO05D003735 6.0e-27 124.0 93 55.9
QL05p019413 Quercus lobata HOM05D003215 ORTHO05D003735 6.0e-27 124.0 89 59.6
Sc24g0002070 Simmondsia chinensis HOM05D003215 ORTHO05D003735 6.0e-27 124.0 88 61.4
SGA_v2.0_scaffold124G33628 Striga asiatica HOM05D003215 ORTHO05D003735 6.0e-27 124.0 93 59.1
vmacro10400 Vaccinium macrocarpon HOM05D003215 ORTHO05D003735 6.0e-27 124.0 89 60.7
CiPaw.11G100100 Carya illinoinensis HOM05D003215 ORTHO05D003735 7.8e-27 123.6 89 57.3
Prupe.6G106700 Prunus persica HOM05D003215 ORTHO05D003735 7.8e-27 123.6 89 59.6
CAN.G3121.3 Capsicum annuum HOM05D003215 ORTHO05D003735 1.7e-26 122.5 93 60.2
CAN.G861.12 Capsicum annuum HOM05D003215 ORTHO05D003735 1.7e-26 122.5 93 60.2
PGSC0003DMG400015274 Solanum tuberosum HOM05D003215 ORTHO05D003735 1.7e-26 122.5 93 58.1
HanXRQChr10g0309901 Helianthus annuus HOM05D003215 ORTHO05D003735 2.3e-26 122.1 89 57.3
Manes.04G016500 Manihot esculenta HOM05D003215 ORTHO05D003735 2.3e-26 122.1 93 57.0
Manes.11G149200 Manihot esculenta HOM05D003215 ORTHO05D003735 3.0e-26 121.7 89 58.4
Hund25131 Selenicereus undatus HOM05D003215 ORTHO05D003735 3.0e-26 121.7 89 59.6
SGA_v2.0_scaffold114G31828 Striga asiatica HOM05D003215 ORTHO05D003735 3.0e-26 121.7 93 55.9
EL10Ac1g02277 Beta vulgaris HOM05D003215 ORTHO05D003735 3.9e-26 121.3 88 63.6
ECA233G3624 Erigeron canadensis HOM05D003215 ORTHO05D003735 3.9e-26 121.3 93 55.9
Solyc03g019800.4 Solanum lycopersicum HOM05D003215 ORTHO05D003735 5.1e-26 120.9 93 57.0
Sopen03g029820 Solanum pennellii HOM05D003215 ORTHO05D003735 5.1e-26 120.9 93 57.0
arahy.Tifrunner.gnm1.ann1.7W7N8S Arachis hypogaea HOM05D003215 ORTHO05D003735 6.6e-26 120.6 89 56.2
Cc11_g08560 Coffea canephora HOM05D003215 ORTHO05D003735 6.6e-26 120.6 93 57.0
Glyma.13G128500 Glycine max HOM05D003215 ORTHO05D003735 6.6e-26 120.6 89 56.2
Atru.chr3.3574 Acer truncatum HOM05D003215 ORTHO05D003735 8.6e-26 120.2 89 56.2
MD04G1037700 Malus domestica HOM05D003215 ORTHO05D003735 8.6e-26 120.2 89 58.4
Nitab4.5_0004170g0030 Nicotiana tabacum HOM05D003215 ORTHO05D003735 8.6e-26 120.2 93 57.0
Potri.015G095000 Populus trichocarpa HOM05D003215 ORTHO05D003735 8.6e-26 120.2 93 55.9
Sed0005911 Sechium edule HOM05D003215 ORTHO05D003735 8.6e-26 120.2 89 57.3
FAN16G3289 Fragaria x ananassa HOM05D003215 ORTHO05D003735 1.1e-25 119.8 89 58.4
Potri.003G168900 Populus trichocarpa HOM05D003215 ORTHO05D003735 1.1e-25 119.8 93 55.9
RcHm_v2.0_Chr5g0058161 Rosa chinensis HOM05D003215 ORTHO05D003735 1.1e-25 119.8 89 58.4
RcHm_v2.0_Chr7g0222761 Rosa chinensis HOM05D003215 ORTHO05D003735 1.1e-25 119.8 89 58.4
Dinv29349 Davidia involucrata HOM05D003215 ORTHO05D003735 1.5e-25 119.4 89 59.6
Peaxi162Scf00029g00131 Petunia axillaris HOM05D003215 ORTHO05D003735 1.5e-25 119.4 93 58.1
PSO210G0114 Papaver somniferum HOM05D003215 ORTHO05D003735 1.9e-25 119.0 89 59.6
Lalb_Chr01g0022221 Lupinus albus HOM05D003215 ORTHO05D003735 2.5e-25 118.6 89 56.2
Thecc.09G346500 Theobroma cacao HOM05D003215 ORTHO05D003735 2.5e-25 118.6 88 56.8
TPR.G16275 Trifolium pratense HOM05D003215 ORTHO05D003735 2.5e-25 118.6 89 53.9
CsaV3_3G009340 Cucumis sativus L. HOM05D003215 ORTHO05D003735 3.3e-25 118.2 89 57.3
Atru.chr3.3572 Acer truncatum HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 55.1
Ca_14134_v3 Cicer arietinum L. HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 56.2
FvH4_3g31460 Fragaria vesca HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 57.3
FAN11G0613 Fragaria x ananassa HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 57.3
FAN21G3495 Fragaria x ananassa HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 57.3
Sabra03G0123800 Salix brachista HOM05D003215 ORTHO05D003735 5.6e-25 117.5 89 56.2
Duzib168G1098 Durio zibethinus HOM05D003215 ORTHO05D003735 7.3e-25 117.1 88 55.7
ECA236G3716 Erigeron canadensis HOM05D003215 ORTHO05D003735 7.3e-25 117.1 93 55.9
Peaxi162Scf00102g00926 Petunia axillaris HOM05D003215 ORTHO05D003735 7.3e-25 117.1 93 57.0
Peaxi162Scf01390g00031 Petunia axillaris HOM05D001168 ORTHO05D003735 7.3e-25 117.1 89 58.4
Lj1g0005602 Lotus japonicus HOM05D003215 ORTHO05D003735 9.5e-25 116.7 89 56.2
Peaxi162Scf01390g00030 Petunia axillaris HOM05D003215 ORTHO05D003735 1.2e-24 116.3 89 57.3
MELO3C006154.2 Cucumis melo HOM05D003215 ORTHO05D003735 1.6e-24 115.9 89 55.1
Medtr7g029435 Medicago truncatula HOM05D003215 ORTHO05D003735 1.6e-24 115.9 89 52.8
THA.LOC104815151 Tarenaya hassleriana HOM05D003215 ORTHO05D003735 1.6e-24 115.9 70 68.6
Medtr8g077990 Medicago truncatula HOM05D003215 ORTHO05D003735 2.1e-24 115.5 89 52.8
Phvul.007G154900 Phaseolus vulgaris HOM05D003215 ORTHO05D003735 2.1e-24 115.5 89 53.9
PGSC0003DMG400011852 Solanum tuberosum HOM05D003215 ORTHO05D003735 2.1e-24 115.5 93 55.9
ClCG05G001940 Citrullus lanatus HOM05D003215 ORTHO05D003735 2.8e-24 115.2 89 56.2
Migut.D01937 Erythranthe guttata HOM05D003215 ORTHO05D003735 4.7e-24 114.4 90 53.3
PSO210G2437 Papaver somniferum HOM05D003215 ORTHO05D003735 4.7e-24 114.4 89 58.4
PSO210G2801 Papaver somniferum HOM05D003215 ORTHO05D003735 4.7e-24 114.4 89 58.4
PSO210G4537 Papaver somniferum HOM05D003215 ORTHO05D003735 4.7e-24 114.4 89 58.4
PSO675G7906 Papaver somniferum HOM05D003215 ORTHO05D003735 6.2e-24 114.0 89 57.3
CiPaw.15G124500 Carya illinoinensis HOM05D003215 ORTHO05D003735 8.1e-24 113.6 89 50.6
Medtr1g076600 Medicago truncatula HOM05D003215 ORTHO05D003735 8.1e-24 113.6 89 52.8
PSO210G4587 Papaver somniferum HOM05D003215 ORTHO05D003735 8.1e-24 113.6 89 56.2
CANSAT54G0322 Cannabis sativa HOM05D003215 ORTHO05D003735 1.1e-23 113.2 88 55.7
Migut.D01938 Erythranthe guttata HOM05D003215 ORTHO05D003735 1.1e-23 113.2 93 53.8
MBI05_g27786_MAGBIO Magnolia biondii HOM05D003215 ORTHO05D003735 1.4e-23 112.8 83 59.0
Ciclev10030284m.g Citrus clementina HOM05D003215 ORTHO05D003735 1.8e-23 112.5 89 51.7
COL.COLO4_18286 Corchorus olitorius HOM05D003215 ORTHO05D003735 1.8e-23 112.5 88 53.4
PGR083G2356 Punica granatum HOM05D003215 ORTHO05D003735 1.8e-23 112.5 88 58.0
TPR.G12921 Trifolium pratense HOM05D003215 ORTHO05D003735 1.8e-23 112.5 89 51.7
Nitab4.5_0000712g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 2.3e-23 112.1 93 54.8
Psat1g024480 Pisum sativum HOM05D003215 ORTHO05D003735 2.3e-23 112.1 89 52.8
Nitab4.5_0000712g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 4.0e-23 111.3 93 53.8
Ciclev10014556m.g Citrus clementina HOM05D003215 ORTHO05D003735 5.2e-23 110.9 88 51.1
Gohir.A13G231900 Gossypium hirsutum HOM05D003215 ORTHO05D003735 1.2e-22 109.8 88 52.3
Gohir.D13G237500 Gossypium hirsutum HOM05D003215 ORTHO05D003735 1.2e-22 109.8 88 52.3
Gorai.013G268300 Gossypium raimondii HOM05D003215 ORTHO05D003735 1.2e-22 109.8 88 52.3
Nitab4.5_0000185g0040 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.5e-22 109.4 93 52.7
LjContig00081g0004985 Lotus japonicus HOM05D003215 ORTHO05D003735 2.0e-22 109.0 89 53.9
Nitab4.5_0000185g0060 Nicotiana tabacum HOM05D003215 ORTHO05D003735 2.0e-22 109.0 93 53.8
PSO170G2126 Papaver somniferum HOM05D003215 ORTHO05D003735 3.4e-22 108.2 89 53.9
Nitab4.5_0000712g0020 Nicotiana tabacum HOM05D003215 ORTHO05D003735 9.9e-22 106.7 93 52.7
SHI08388 Sapria himalayana HOM05D003215 ORTHO05D003735 9.9e-22 106.7 87 54.0
Lsat_1_v5_gn_7_104201 Lactuca sativa HOM05D003215 ORTHO05D003735 1.7e-21 105.9 93 49.5
Solyc08g007300.3 Solanum lycopersicum HOM05D003215 ORTHO05D003735 1.1e-20 103.2 93 51.6
Sopen08g003240 Solanum pennellii HOM05D003215 ORTHO05D003735 1.1e-20 103.2 93 51.6
Sed0019703 Sechium edule HOM05D003215 ORTHO05D003735 2.4e-20 102.1 89 51.7
Psat4g091440 Pisum sativum HOM05D003215 ORTHO05D003735 3.2e-20 101.7 89 48.3
EL10Ac6g13885 Beta vulgaris HOM05D003215 ORTHO05D003735 4.6e-19 97.8 74 62.2
ATR0751G201 Amborella trichopoda HOM05D003215 ORTHO05D003735 7.8e-19 97.1 81 51.9
HPP92_007494 Vanilla planifolia HOM05D003215 ORTHO05D003735 1.0e-18 96.7 80 50.0
Zm00001eb172100 Zea mays HOM05D003215 ORTHO05D003735 1.3e-18 96.3 83 48.2
CDE11G0705 Ceratophyllum demersum HOM05D003215 ORTHO05D003735 8.6e-18 93.6 84 50.0
CAN.G861.14 Capsicum annuum HOM05D003215 ORTHO05D003735 5.6e-17 90.9 57 66.7
Eucgr.H02514 Eucalyptus grandis HOM05D003215 ORTHO05D003735 7.3e-17 90.5 65 58.5
Aqoxy4G00232 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 9.6e-17 90.1 88 44.3
Aqoxy6G03074 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 1.2e-16 89.7 88 44.3
Lj3g0014709 Lotus japonicus HOM05D003215 ORTHO05D003735 8.1e-16 87.0 89 47.2
Aqoxy2G04188 Aquilegia oxysepala HOM05D003215 ORTHO05D003735 1.1e-15 86.7 88 43.2
Nitab4.5_0003367g0010 Nicotiana tabacum HOM05D003215 ORTHO05D003735 1.5e-14 82.8 61 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2899 Anthoceros agrestis HOM05D003215 ORTHO05D003735 3.4e-14 81.6 80 45.0
Eucgr.H02511 Eucalyptus grandis HOM05D003215 ORTHO05D003735 4.4e-14 81.3 61 55.7
Atru.chr3.3575 Acer truncatum HOM05D003215 ORTHO05D003735 1.1e-12 76.6 56 53.6
Mapoly0158s0003 Marchantia polymorpha HOM05D003215 ORTHO05D003735 2.5e-09 65.5 86 37.2
TPR.G20272 Trifolium pratense HOM05D003215 ORTHO05D003735 5.6e-09 64.3 47 55.3
RcHm_v2.0_Chr7g0227601 Rosa chinensis HOM05D003215 ORTHO05D003735 7.3e-09 63.9 45 57.8
Pp3c4_2120 Physcomitrium patens HOM05D003215 ORTHO05D003735 6.2e-08 60.8 97 36.1
Oeu020912.1 Olea europaea HOM05D003215 ORTHO05D003735 5.3e-07 57.8 59 45.8
SEGI_39348 Sequoiadendron giganteum HOM05D003215 ORTHO05D003735 1.2e-06 56.6 56 44.6
BolC4t26281H Brassica oleracea HOM05D000028 ORTHO05D000390 7.6e-06 53.9 79 39.2


User provided reference genes

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