Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50863 Brassica carinata HOM05D003682 ORTHO05D004224 2.3e-310 1068.1 588 100.0
BolC1t01908H Brassica oleracea HOM05D003682 ORTHO05D004224 1.1e-272 943.0 553 95.3
C01p19800 Brassica napus HOM05D003682 ORTHO05D004224 6.2e-271 937.2 553 94.8
BraA01t01520Z Brassica rapa HOM05D003682 ORTHO05D004224 1.3e-265 919.5 553 93.5
A01p15860 Brassica napus HOM05D003682 ORTHO05D004224 8.1e-263 910.2 553 92.6
Thhalv10024594m.g Eutrema salsugineum HOM05D003682 ORTHO05D004224 3.5e-242 841.6 554 86.6
Sp7g22480 Schrenkiella parvula HOM05D003682 ORTHO05D004224 3.9e-241 838.2 554 86.6
BraA03t14591Z Brassica rapa HOM05D003682 ORTHO05D004224 3.7e-239 831.6 556 85.3
BcaC06g32881 Brassica carinata HOM05D003682 ORTHO05D004224 5.3e-238 827.8 556 86.2
BolC7t45853H Brassica oleracea HOM05D003682 ORTHO05D004224 9.0e-238 827.0 556 86.0
A03p55320 Brassica napus HOM05D003682 ORTHO05D004224 5.9e-237 824.3 556 84.9
C07p53610 Brassica napus HOM05D003682 ORTHO05D004224 4.6e-234 814.7 556 85.4
AT4G24490 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 2.2e-223 779.2 555 81.4
AL7G28730 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 4.5e-221 771.5 555 80.5
CARHR231880 Cardamine hirsuta HOM05D003682 ORTHO05D004224 4.5e-221 771.5 555 81.4
Aa31LG4G9590 Aethionema arabicum HOM05D003682 ORTHO05D004224 1.0e-209 733.8 560 78.0
Carub.0007s1658 Capsella rubella HOM05D003682 ORTHO05D004224 3.0e-209 732.3 555 77.1
AL3G20810 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 7.5e-192 674.5 560 69.1
THA.LOC104804716 Tarenaya hassleriana HOM05D003682 ORTHO05D000002 4.6e-181 638.6 562 67.8
Carub.0003s1254 Capsella rubella HOM05D003682 ORTHO05D004224 1.2e-176 624.0 559 70.8
AT5G41820 Arabidopsis thaliana HOM05D003682 ORTHO05D004224 9.6e-163 577.8 580 60.3
AL7G47420 Arabidopsis lyrata HOM05D003682 ORTHO05D004224 1.7e-159 567.0 571 59.9
Cfa003049 Carpinus fangiana HOM05D003682 ORTHO05D004224 4.3e-147 525.8 573 53.6
Thecc.08G072000 Theobroma cacao HOM05D003682 ORTHO05D004224 9.6e-147 524.6 574 60.6
Gorai.012G012000 Gossypium raimondii HOM05D003682 ORTHO05D004224 7.6e-144 515.0 573 59.9
Gohir.A05G405400 Gossypium hirsutum HOM05D003682 ORTHO05D004224 2.2e-143 513.5 573 59.5
Gohir.D04G010200 Gossypium hirsutum HOM05D003682 ORTHO05D004224 1.4e-142 510.8 573 59.5
Gohir.A06G031900 Gossypium hirsutum HOM05D003682 ORTHO05D004224 7.1e-142 508.4 574 58.9
CiPaw.08G056300 Carya illinoinensis HOM05D003682 ORTHO05D004224 6.7e-140 501.9 571 57.1
Gohir.D06G031000 Gossypium hirsutum HOM05D003682 ORTHO05D004224 3.3e-139 499.6 574 58.2
Ciclev10000458m.g Citrus clementina HOM05D003682 ORTHO05D004224 4.3e-139 499.2 577 58.1
Gorai.010G034200 Gossypium raimondii HOM05D003682 ORTHO05D004224 5.6e-139 498.8 573 58.3
Haze_22471 Corylus avellana HOM05D003682 ORTHO05D004224 1.1e-137 494.6 570 56.7
CANSAT80G0637 Cannabis sativa HOM05D003682 ORTHO05D004224 2.4e-137 493.4 571 56.6
QL09p017991 Quercus lobata HOM05D003682 ORTHO05D004224 1.7e-135 487.3 577 56.7
Potri.006G225100 Populus trichocarpa HOM05D003682 ORTHO05D004224 8.4e-135 485.0 572 56.8
Sabra06G0174000 Salix brachista HOM05D003682 ORTHO05D004224 7.1e-134 481.9 570 56.5
Duzib093G1710 Durio zibethinus HOM05D003682 ORTHO05D004224 1.8e-132 477.2 564 57.8
Aqoxy5G01369 Aquilegia oxysepala HOM05D003682 ORTHO05D004224 6.7e-132 475.3 579 49.4
Dinv44868 Davidia involucrata HOM05D003682 ORTHO05D004224 1.5e-131 474.2 563 57.0
Manes.05G189900 Manihot esculenta HOM05D003682 ORTHO05D004224 9.0e-129 464.9 570 56.0
Ca_16009_v3 Cicer arietinum L. HOM05D003682 ORTHO05D004224 1.2e-128 464.5 567 55.6
TWI38G0994 Tripterygium wilfordii HOM05D003682 ORTHO05D004224 1.3e-127 461.1 581 53.9
Lalb_Chr17g0344591 Lupinus albus HOM05D003682 ORTHO05D004224 7.1e-126 455.3 573 54.3
TAR381G0824 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.6e-125 454.1 575 54.6
PSO782G3450 Papaver somniferum HOM05D003682 ORTHO05D004224 7.9e-125 451.8 577 50.6
FvH4_5g35190 Fragaria vesca HOM05D003682 ORTHO05D004224 5.1e-124 449.1 577 54.6
TAR625G0645 Trochodendron aralioides HOM05D003682 ORTHO05D004224 5.1e-124 449.1 578 54.3
RcHm_v2.0_Chr7g0236311 Rosa chinensis HOM05D003682 ORTHO05D004224 1.6e-122 444.1 578 54.2
Actinidia29628 Actinidia chinensis HOM05D003682 ORTHO05D004224 4.8e-122 442.6 582 51.7
arahy.Tifrunner.gnm1.ann1.6QC2QS Arachis hypogaea HOM05D003682 ORTHO05D004224 6.3e-122 442.2 573 54.5
Lj4A589T43 Lonicera japonica HOM05D003682 ORTHO05D004224 1.1e-121 441.4 579 52.8
PSO170G3281 Papaver somniferum HOM05D003682 ORTHO05D004224 1.1e-121 441.4 578 50.3
vmacro04646 Vaccinium macrocarpon HOM05D003682 ORTHO05D004224 1.4e-121 441.0 584 52.6
FAN18G1070 Fragaria x ananassa HOM05D003682 ORTHO05D004224 2.4e-121 440.3 578 53.5
arahy.Tifrunner.gnm1.ann1.X4VYGK Arachis hypogaea HOM05D003682 ORTHO05D004224 3.1e-121 439.9 573 53.9
Glyma.06G097500 Glycine max HOM05D003682 ORTHO05D004224 4.1e-121 439.5 571 54.5
Medtr3g100110 Medicago truncatula HOM05D003682 ORTHO05D004224 9.0e-121 438.3 573 53.6
Prupe.1G533400 Prunus persica HOM05D003682 ORTHO05D004224 1.2e-120 438.0 571 52.5
Lj4A600T32 Lonicera japonica HOM05D003682 ORTHO05D004224 1.5e-120 437.6 578 52.8
Lj1g0007093 Lotus japonicus HOM05D003682 ORTHO05D004224 2.6e-120 436.8 574 54.4
Nn5g27243 Nelumbo nucifera HOM05D003682 ORTHO05D004224 4.5e-120 436.0 577 53.6
Eucgr.F00427 Eucalyptus grandis HOM05D003682 ORTHO05D004224 7.7e-120 435.3 572 53.8
Glyma.04G095800 Glycine max HOM05D003682 ORTHO05D004224 7.7e-120 435.3 570 54.2
MD08G1200000 Malus domestica HOM05D003682 ORTHO05D004224 1.0e-119 434.9 590 51.9
Sed0007462 Sechium edule HOM05D003682 ORTHO05D004224 2.2e-119 433.7 572 52.8
Sed0002040 Sechium edule HOM05D003682 ORTHO05D004224 2.9e-119 433.3 572 52.6
ClCG11G014620 Citrullus lanatus HOM05D003682 ORTHO05D004224 5.0e-119 432.6 574 53.3
Lsat_1_v5_gn_6_106460 Lactuca sativa HOM05D003682 ORTHO05D004224 5.0e-119 432.6 565 52.2
Actinidia19624 Actinidia chinensis HOM05D003682 ORTHO05D004224 1.1e-118 431.4 582 51.4
Sc26g0002240 Simmondsia chinensis HOM05D003682 ORTHO05D004224 1.4e-118 431.0 580 52.8
AUR62042881 Chenopodium quinoa HOM05D003682 ORTHO05D004224 1.2e-117 427.9 565 52.9
PGR042G1797 Punica granatum HOM05D003682 ORTHO05D004224 1.4e-116 424.5 572 51.9
Cc10_g15970 Coffea canephora HOM05D003682 ORTHO05D004224 1.8e-116 424.1 571 53.2
FAN13G2001 Fragaria x ananassa HOM05D003682 ORTHO05D004224 8.8e-116 421.8 598 51.5
CsaV3_6G052200 Cucumis sativus L. HOM05D003682 ORTHO05D004224 5.7e-115 419.1 571 52.0
MELO3C007092.2 Cucumis melo HOM05D003682 ORTHO05D004224 9.7e-115 418.3 604 51.2
FAN08G1971 Fragaria x ananassa HOM05D003682 ORTHO05D004224 4.8e-114 416.0 629 42.9
DCAR_019320 Daucus carota HOM05D003682 ORTHO05D004224 6.9e-113 412.1 578 51.0
Phvul.009G036000 Phaseolus vulgaris HOM05D003682 ORTHO05D004224 6.9e-113 412.1 561 52.8
MBI16_g12477_MAGBIO Magnolia biondii HOM05D003682 ORTHO05D004224 1.5e-112 411.0 543 54.3
Lj4A739G25 Lonicera japonica HOM05D003682 ORTHO05D004224 3.4e-112 409.8 578 50.0
Atru.chr13.999 Acer truncatum HOM05D003682 ORTHO05D004224 7.7e-112 408.7 467 60.2
Rhsim07G0212400 Rhododendron simsii HOM05D003682 ORTHO05D004224 1.7e-111 407.5 640 41.1
TPR.G6373 Trifolium pratense HOM05D003682 ORTHO05D004224 3.8e-111 406.4 565 51.5
VMungo1309G2518 Vigna mungo HOM05D003682 ORTHO05D004224 1.1e-110 404.8 597 49.2
ECA246G3230 Erigeron canadensis HOM05D003682 ORTHO05D004224 1.6e-109 401.0 570 51.9
EL10Ac6g13977 Beta vulgaris HOM05D003682 ORTHO05D004224 2.1e-109 400.6 605 49.3
HanXRQChr10g0277791 Helianthus annuus HOM05D003682 ORTHO05D004224 2.1e-109 400.6 565 51.2
Sopen04g030190 Solanum pennellii HOM05D003682 ORTHO05D004224 2.7e-109 400.2 578 51.0
Solyc04g076430.3 Solanum lycopersicum HOM05D003682 ORTHO05D004224 4.7e-109 399.4 579 50.9
Nitab4.5_0006151g0030 Nicotiana tabacum HOM05D003682 ORTHO05D004224 6.1e-109 399.1 578 50.7
PGSC0003DMG400009355 Solanum tuberosum HOM05D003682 ORTHO05D004224 2.3e-108 397.1 579 51.8
Oeu025829.1 Olea europaea HOM05D003682 ORTHO05D004224 6.7e-108 395.6 581 50.3
SGA_v2.0_scaffold1G00611 Striga asiatica HOM05D003682 ORTHO05D004224 1.1e-107 394.8 573 51.3
Migut.D00421 Erythranthe guttata HOM05D003682 ORTHO05D004224 2.0e-107 394.0 585 50.6
Psat7g218480 Pisum sativum HOM05D003682 ORTHO05D004224 2.0e-107 394.0 567 51.7
Oeu060952.2 Olea europaea HOM05D003682 ORTHO05D004224 4.4e-107 392.9 579 50.9
Nitab4.5_0000131g0160 Nicotiana tabacum HOM05D003682 ORTHO05D004224 1.7e-106 391.0 578 49.0
CAN.G475.14 Capsicum annuum HOM05D003682 ORTHO05D004224 2.8e-106 390.2 578 50.3
FAN04G1105 Fragaria x ananassa HOM05D003682 ORTHO05D004224 5.3e-105 386.0 604 42.7
HPP92_013453 Vanilla planifolia HOM05D003682 ORTHO05D004224 9.4e-102 375.2 573 41.0
Peaxi162Scf00454g00225 Petunia axillaris HOM05D003682 ORTHO05D004224 3.6e-101 373.2 574 46.9
ATR0767G054 Amborella trichopoda HOM05D003682 ORTHO05D004224 1.4e-100 371.3 588 47.6
Zm00001eb224710 Zea mays HOM05D003682 ORTHO05D004224 1.4e-100 371.3 567 41.6
MD15G1387100 Malus domestica HOM05D003682 ORTHO05D004224 7.0e-97 359.0 519 49.7
Hund17277 Selenicereus undatus HOM05D003682 ORTHO05D004224 4.5e-96 356.3 564 48.9
Os06g0677500 Oryza sativa ssp. japonica HOM05D003682 ORTHO05D004224 1.1e-94 351.7 574 39.9
CDE01G0832 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.1e-93 347.4 559 47.6
SEGI_28473 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-92 344.0 576 44.8
Zm00001eb273870 Zea mays HOM05D003682 ORTHO05D004224 2.6e-91 340.5 570 38.8
CSS0030960 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.4e-91 340.1 516 51.4
SalBow4G2331 Salvia bowleyana HOM05D003682 ORTHO05D004224 3.1e-89 333.6 526 48.1
CDE02G0915 Ceratophyllum demersum HOM05D003682 ORTHO05D004224 2.1e-85 320.9 547 40.0
AUR62037113 Chenopodium quinoa HOM05D003682 ORTHO05D004224 7.5e-75 285.8 396 43.9
Prupe.1G572600 Prunus persica HOM05D003682 ORTHO05D004224 1.8e-73 281.2 460 40.4
HanXRQChr08g0233491 Helianthus annuus HOM05D003682 ORTHO05D004224 3.3e-70 270.4 408 49.8
CSS0003141 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.2e-69 268.5 394 43.9
Lalb_Chr04g0252801 Lupinus albus HOM05D003682 ORTHO05D004224 1.7e-66 258.1 267 62.2
GSVIVG01009190001 Vitis vinifera HOM05D003682 ORTHO05D004224 5.0e-63 246.5 253 69.6
BcaNung04806 Brassica carinata HOM05D003682 ORTHO05D004224 1.3e-58 231.9 135 85.2
Mapoly0151s0003 Marchantia polymorpha HOM05D003682 ORTHO05D004224 1.1e-57 228.8 579 39.0
SHI09562 Sapria himalayana HOM05D003682 ORTHO05D000023 3.2e-57 227.3 393 38.7
SEGI_15297 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 7.1e-57 226.1 399 38.1
COL.COLO4_35257 Corchorus olitorius HOM05D003682 ORTHO05D004224 1.2e-56 225.3 136 81.6
CSS0029858 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-55 221.9 474 35.0
Glyma.02G123302 Glycine max HOM05D003682 ORTHO05D004224 5.6e-54 216.5 339 42.2
CSS0013415 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.0e-52 210.3 467 35.8
CBR_g19613 Chara braunii HOM05D003682 ORTHO05D004224 6.8e-44 183.0 649 30.4
AagrBONN_evm.TU.Sc2ySwM_117.1254 Anthoceros agrestis HOM05D003682 ORTHO05D004224 2.0e-43 181.4 552 29.3
Cpa.g.c39765 Carica papaya HOM05D003682 ORTHO05D004224 2.7e-40 171.0 197 51.8
BcaB06g27567 Brassica carinata HOM05D003682 ORTHO05D004224 1.7e-39 168.3 129 70.5
Cpa.g.c34457.1 Carica papaya HOM05D003682 ORTHO05D004224 3.3e-38 164.1 134 64.2
SEGI_17476 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 1.3e-34 152.1 304 35.2
SHI09561 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-32 144.4 125 59.2
GSVIVG01009191001 Vitis vinifera HOM05D003682 ORTHO05D004224 3.5e-32 144.1 189 49.2
SEGI_24080 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.5e-30 137.9 122 55.7
SMO307G0051 Selaginella moellendorffii HOM05D003682 ORTHO05D004224 2.9e-26 124.4 136 47.1
unitig_0.g156 Utricularia gibba HOM05D003682 ORTHO05D004224 1.9e-25 121.7 109 56.9
ECA232G1558 Erigeron canadensis HOM05D003682 ORTHO05D004224 9.3e-25 119.4 122 55.7
Pp3c1_10430 Physcomitrium patens HOM05D003682 ORTHO05D004224 4.3e-22 110.5 348 28.7
CSS0023594 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 9.6e-22 109.4 98 61.2
HPP92_013470 Vanilla planifolia HOM05D003682 ORTHO05D004224 1.3e-21 109.0 180 38.9
EL10Ac3g05976 Beta vulgaris HOM05D003682 ORTHO05D004224 1.7e-18 98.6 70 68.6
CSS0005132 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 2.2e-18 98.2 94 58.5
unitig_0.g155 Utricularia gibba HOM05D003682 ORTHO05D004224 3.8e-18 97.4 139 44.6
MCO12G062 Micromonas commoda HOM05D003682 ORTHO05D004224 4.6e-16 90.5 287 28.2
Dinv42603 Davidia involucrata HOM05D003682 ORTHO05D004224 3.9e-15 87.4 126 44.4
Actinidia36899 Actinidia chinensis HOM05D003682 ORTHO05D004224 2.5e-14 84.7 86 51.2
Ah.04g150940 Amaranthus hybridus HOM05D007488 ORTHO05D009461 4.3e-14 84.0 43 88.4
PRCOL_00003254 Prasinoderma coloniale HOM05D003682 ORTHO05D004224 1.8e-12 78.6 256 26.2
Cre07.g339350 Chlamydomonas reinhardtii HOM05D003682 ORTHO05D004224 4.1e-12 77.4 124 36.3
Nn1g05594 Nelumbo nucifera HOM05D003682 ORTHO05D004224 1.2e-11 75.9 72 58.3
Psat5g049320 Pisum sativum HOM05D003682 ORTHO05D004224 1.3e-10 72.4 152 35.5
TAR628G0387 Trochodendron aralioides HOM05D003682 ORTHO05D004224 1.2e-08 65.9 51 54.9
CSS0020196 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-08 64.3 50 66.0
CSS0037747 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 3.5e-08 64.3 50 66.0
CSS0029499 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 4.6e-08 63.9 49 67.3
CSS0037736 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.3e-07 62.4 50 64.0
CSS0029631 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 1.8e-07 62.0 49 65.3
PGR102G2117 Punica granatum HOM05D003682 ORTHO05D004224 2.3e-07 61.6 60 56.7
SEGI_02938 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-07 61.6 43 58.1
SEGI_19039 Sequoiadendron giganteum HOM05D003682 ORTHO05D004224 2.3e-07 61.6 43 58.1
Lsat_1_v5_gn_3_58200 Lactuca sativa HOM05D003682 ORTHO05D004224 3.9e-07 60.8 72 43.1
CSS0045772 Camellia sinensis var. sinensis HOM05D003682 ORTHO05D004224 5.1e-07 60.5 49 63.3
HanXRQChr08g0233481 Helianthus annuus HOM05D003682 ORTHO05D004224 9.7e-06 56.2 38 71.1


User provided reference genes

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