Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g50621 Brassica carinata HOM05D000905 ORTHO05D000749 4.9e-57 224.2 108 100.0
C01p23210 Brassica napus HOM05D000905 ORTHO05D000749 4.9e-57 224.2 108 100.0
BolC1t02254H Brassica oleracea HOM05D000905 ORTHO05D000749 4.9e-57 224.2 108 100.0
A01p18210 Brassica napus HOM05D000905 ORTHO05D000749 1.4e-56 222.6 108 99.1
BraA01t01776Z Brassica rapa HOM05D000905 ORTHO05D000749 1.4e-56 222.6 108 99.1
Thhalv10024370m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 1.0e-54 216.5 108 94.4
Sp7g25030 Schrenkiella parvula HOM05D000905 ORTHO05D000749 1.3e-54 216.1 108 93.5
CARHR234710 Cardamine hirsuta HOM05D000905 ORTHO05D000749 2.3e-54 215.3 108 93.5
AL7G25740 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 1.5e-53 212.6 108 92.6
AT4G27060 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 1.9e-53 212.2 108 92.6
Carub.0007s1379 Capsella rubella HOM05D000905 ORTHO05D000749 7.4e-53 210.3 108 90.7
Aa31LG5G10340 Aethionema arabicum HOM05D000905 ORTHO05D000749 1.1e-43 179.9 108 75.0
THA.LOC104817657 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 1.8e-43 179.1 108 75.0
COL.COLO4_09633 Corchorus olitorius HOM05D000905 ORTHO05D000749 6.5e-41 170.6 108 70.4
Ciclev10007404m.g Citrus clementina HOM05D000905 ORTHO05D000749 1.2e-39 166.4 108 67.6
Thecc.07G043700 Theobroma cacao HOM05D000905 ORTHO05D000749 1.0e-38 163.3 108 67.6
Duzib268G1675 Durio zibethinus HOM05D000905 ORTHO05D000749 3.0e-38 161.8 108 67.6
Cpa.g.sc97.34 Carica papaya HOM05D000905 ORTHO05D000749 1.5e-37 159.5 108 65.7
Gohir.D01G065100 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.3e-37 157.9 108 64.8
Gorai.002G086800 Gossypium raimondii HOM05D000905 ORTHO05D000749 5.7e-37 157.5 107 64.5
Potri.011G136700 Populus trichocarpa HOM05D000905 ORTHO05D000749 7.4e-37 157.1 108 63.0
Gohir.D13G143800 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.3e-36 156.4 108 62.0
Sp1g37630 Schrenkiella parvula HOM05D000905 ORTHO05D000749 1.6e-36 156.0 106 67.0
Duzib170G0897 Durio zibethinus HOM05D000905 ORTHO05D000749 2.2e-36 155.6 108 66.7
Atru.chr2.3279 Acer truncatum HOM05D000905 ORTHO05D000749 2.8e-36 155.2 108 62.0
Gohir.A06G077950 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.8e-36 155.2 108 62.0
Gohir.A13G139000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.8e-36 155.2 108 62.0
Gohir.D03G108700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 2.8e-36 155.2 108 62.0
Gorai.013G160800 Gossypium raimondii HOM05D000905 ORTHO05D000749 2.8e-36 155.2 108 61.1
AT1G50890 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 4.8e-36 154.5 106 64.2
Gohir.D05G367300 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.8e-36 154.5 108 64.8
TWI39G0932 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 4.8e-36 154.5 105 62.9
Gohir.A04G018700 Gossypium hirsutum HOM05D000905 ORTHO05D000749 6.3e-36 154.1 105 64.8
DCAR_022552 Daucus carota HOM05D000905 ORTHO05D000749 8.2e-36 153.7 108 60.2
Potri.001G421200 Populus trichocarpa HOM05D000905 ORTHO05D000749 8.2e-36 153.7 108 63.0
Sabra11G0122700 Salix brachista HOM05D000905 ORTHO05D000749 8.2e-36 153.7 107 61.7
AL1G58620 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 1.1e-35 153.3 106 64.2
Gohir.A01G078000 Gossypium hirsutum HOM05D000905 ORTHO05D000749 1.1e-35 153.3 108 63.0
Gorai.009G434900 Gossypium raimondii HOM05D000905 ORTHO05D000749 1.1e-35 153.3 108 63.9
Aa31LG10G3310 Aethionema arabicum HOM05D000905 ORTHO05D000749 1.4e-35 152.9 108 63.9
A05p19900 Brassica napus HOM05D000905 ORTHO05D000749 1.4e-35 152.9 108 64.8
Lsat_1_v5_gn_7_109061 Lactuca sativa HOM05D000905 ORTHO05D000749 1.4e-35 152.9 108 60.2
BcaC05g27389 Brassica carinata HOM05D000905 ORTHO05D000749 2.4e-35 152.1 108 64.8
C05p33240 Brassica napus HOM05D000905 ORTHO05D000749 2.4e-35 152.1 108 64.8
BolC5t32049H Brassica oleracea HOM05D000905 ORTHO05D000749 2.4e-35 152.1 108 64.8
BraA05t20895Z Brassica rapa HOM05D000905 ORTHO05D000749 2.4e-35 152.1 108 64.8
Manes.03G126600 Manihot esculenta HOM05D000905 ORTHO05D000749 3.1e-35 151.8 108 63.0
BcaB02g11191 Brassica carinata HOM05D000905 ORTHO05D000749 5.3e-35 151.0 108 63.9
CARHR040930 Cardamine hirsuta HOM05D000905 ORTHO05D000749 5.3e-35 151.0 106 64.2
Haze_09648 Corylus avellana HOM05D000905 ORTHO05D000749 5.3e-35 151.0 108 60.2
TWI38G0391 Tripterygium wilfordii HOM05D000905 ORTHO05D000749 5.3e-35 151.0 108 60.2
Thhalv10011243m.g Eutrema salsugineum HOM05D000905 ORTHO05D000749 9.0e-35 150.2 106 64.2
Sabra16G0286000 Salix brachista HOM05D000905 ORTHO05D000749 9.0e-35 150.2 108 61.1
Glyma.08G313200 Glycine max HOM05D000905 ORTHO05D000749 1.2e-34 149.8 108 63.9
Cfa020384 Carpinus fangiana HOM05D000905 ORTHO05D000749 1.5e-34 149.4 108 59.3
Glyma.18G101400 Glycine max HOM05D000905 ORTHO05D000749 2.0e-34 149.1 108 63.9
PGR083G2090 Punica granatum HOM05D000905 ORTHO05D000749 2.0e-34 149.1 108 58.3
Phvul.006G039200 Phaseolus vulgaris HOM05D000905 ORTHO05D000749 2.6e-34 148.7 108 63.9
Carub.0001s3984 Capsella rubella HOM05D000905 ORTHO05D000749 4.5e-34 147.9 106 63.2
CiPaw.12G128100 Carya illinoinensis HOM05D000905 ORTHO05D000749 5.9e-34 147.5 108 60.2
GSVIVG01037609001 Vitis vinifera HOM05D000905 ORTHO05D000749 7.6e-34 147.1 108 56.5
ECA236G3325 Erigeron canadensis HOM05D000905 ORTHO05D000749 1.0e-33 146.7 108 55.6
VMungo0540G1730 Vigna mungo HOM05D000905 ORTHO05D000749 1.0e-33 146.7 108 63.0
HanXRQChr11g0336261 Helianthus annuus HOM05D000905 ORTHO05D000749 1.7e-33 146.0 108 55.6
Nitab4.5_0005048g0060 Nicotiana tabacum HOM05D000905 ORTHO05D000749 1.7e-33 146.0 108 57.4
CANSAT11G2225 Cannabis sativa HOM05D000905 ORTHO05D000749 2.9e-33 145.2 108 60.2
QL08p011855 Quercus lobata HOM05D000905 ORTHO05D000749 5.0e-33 144.4 107 57.0
PGSC0003DMG400014424 Solanum tuberosum HOM05D000905 ORTHO05D000749 5.0e-33 144.4 108 57.4
Prupe.4G209400 Prunus persica HOM05D000905 ORTHO05D000749 6.5e-33 144.1 108 58.3
CAN.G1781.8 Capsicum annuum HOM05D000905 ORTHO05D000749 8.5e-33 143.7 108 56.5
TAR627G0016 Trochodendron aralioides HOM05D000905 ORTHO05D000749 8.5e-33 143.7 108 59.3
arahy.Tifrunner.gnm1.ann1.83EP2I Arachis hypogaea HOM05D000905 ORTHO05D000749 1.1e-32 143.3 108 63.0
arahy.Tifrunner.gnm1.ann1.FI466Z Arachis hypogaea HOM05D000905 ORTHO05D000749 1.1e-32 143.3 108 62.0
arahy.Tifrunner.gnm1.ann1.IS6ADN Arachis hypogaea HOM05D000905 ORTHO05D000749 1.1e-32 143.3 108 63.0
Lj1A869T79 Lonicera japonica HOM05D000905 ORTHO05D000749 1.1e-32 143.3 103 58.3
Nitab4.5_0001393g0200 Nicotiana tabacum HOM05D000905 ORTHO05D000749 1.1e-32 143.3 108 56.5
Lj6g0022720 Lotus japonicus HOM05D000905 ORTHO05D000749 1.4e-32 142.9 108 63.9
Cc05_g13520 Coffea canephora HOM05D000905 ORTHO05D000749 1.9e-32 142.5 108 58.3
MELO3C018075.2 Cucumis melo HOM05D000905 ORTHO05D000749 1.9e-32 142.5 104 58.7
Hund02096 Selenicereus undatus HOM05D000905 ORTHO05D000749 5.5e-32 141.0 104 56.7
Actinidia35329 Actinidia chinensis HOM05D000905 ORTHO05D000749 7.2e-32 140.6 108 55.6
ECA246G4761 Erigeron canadensis HOM05D000905 ORTHO05D000749 7.2e-32 140.6 108 57.4
FAN11G2009 Fragaria x ananassa HOM05D000905 ORTHO05D000749 9.3e-32 140.2 108 55.6
Manes.15G073600 Manihot esculenta HOM05D000905 ORTHO05D000749 9.3e-32 140.2 103 59.2
Migut.H01841 Erythranthe guttata HOM05D000905 ORTHO05D000749 1.2e-31 139.8 105 53.3
Sopen10g002300 Solanum pennellii HOM05D000905 ORTHO05D000749 1.2e-31 139.8 108 55.6
THA.LOC104817878 Tarenaya hassleriana HOM05D000905 ORTHO05D000749 1.2e-31 139.8 107 59.8
Actinidia10722 Actinidia chinensis HOM05D000905 ORTHO05D000749 1.6e-31 139.4 108 55.6
Aqoxy4G02530_Aqoxy4G02531 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 1.6e-31 139.4 108 57.4
Solyc10g006350.3 Solanum lycopersicum HOM05D000905 ORTHO05D000749 1.6e-31 139.4 108 55.6
CsaV3_3G023290 Cucumis sativus L. HOM05D000905 ORTHO05D000749 2.1e-31 139.0 104 57.7
Rhsim04G0002200 Rhododendron simsii HOM05D000905 ORTHO05D000749 2.1e-31 139.0 108 56.5
RhsimUnG0252200 Rhododendron simsii HOM05D000905 ORTHO05D000749 2.1e-31 139.0 108 56.5
RcHm_v2.0_Chr5g0038291 Rosa chinensis HOM05D000905 ORTHO05D000749 2.1e-31 139.0 108 55.6
EL10Ac4g07897 Beta vulgaris HOM05D000905 ORTHO05D000749 2.7e-31 138.7 104 54.8
CiPaw.11G187300 Carya illinoinensis HOM05D000905 ORTHO05D000749 2.7e-31 138.7 104 55.8
Nn1g07106 Nelumbo nucifera HOM05D000905 ORTHO05D000749 2.7e-31 138.7 108 57.4
Dinv40736 Davidia involucrata HOM05D000905 ORTHO05D000749 3.6e-31 138.3 108 56.5
Sed0024641 Sechium edule HOM05D000905 ORTHO05D000749 3.6e-31 138.3 104 60.6
ClCG05G014420 Citrullus lanatus HOM05D000905 ORTHO05D000749 4.6e-31 137.9 104 57.7
FvH4_3g22240 Fragaria vesca HOM05D000905 ORTHO05D000749 4.6e-31 137.9 108 54.6
FAN21G4003 Fragaria x ananassa HOM05D000905 ORTHO05D000749 4.6e-31 137.9 108 55.6
AUR62015708 Chenopodium quinoa HOM05D000905 ORTHO05D000749 6.1e-31 137.5 104 55.8
AUR62020498 Chenopodium quinoa HOM05D000905 ORTHO05D000749 6.1e-31 137.5 104 55.8
FAN16G1780 Fragaria x ananassa HOM05D000905 ORTHO05D000749 6.1e-31 137.5 108 54.6
Nn1g03581 Nelumbo nucifera HOM05D000905 ORTHO05D000749 6.1e-31 137.5 104 56.7
Peaxi162Scf00387g00313 Petunia axillaris HOM05D000905 ORTHO05D000749 7.9e-31 137.1 108 53.7
CSS0003768 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 1.0e-30 136.7 108 55.6
FAN25G2510 Fragaria x ananassa HOM05D000905 ORTHO05D000749 1.0e-30 136.7 108 54.6
Ca_14811_v3 Cicer arietinum L. HOM05D000905 ORTHO05D000749 1.4e-30 136.3 108 60.2
unitig_8.g4577 Utricularia gibba HOM05D000905 ORTHO05D000749 1.8e-30 136.0 104 53.8
Lalb_Chr20g0113961 Lupinus albus HOM05D000905 ORTHO05D000749 2.3e-30 135.6 103 60.2
Lsat_1_v5_gn_5_5161 Lactuca sativa HOM05D000905 ORTHO05D000749 3.0e-30 135.2 108 53.7
Oeu062601.1 Olea europaea HOM05D000905 ORTHO05D000749 3.0e-30 135.2 108 52.8
HanXRQChr08g0233981 Helianthus annuus HOM05D000905 ORTHO05D000749 3.9e-30 134.8 107 54.2
Hma1.2p1_0938F.1_g239210 Hydrangea macrophylla HOM05D000905 ORTHO05D000749 3.9e-30 134.8 107 55.1
PSO675G6898 Papaver somniferum HOM05D000905 ORTHO05D000749 5.1e-30 134.4 108 55.6
vmacro09734 Vaccinium macrocarpon HOM05D000905 ORTHO05D000749 5.1e-30 134.4 108 55.6
MD11G1222000 Malus domestica HOM05D000905 ORTHO05D000749 6.7e-30 134.0 108 53.7
MSTRG.14429 Avicennia marina HOM05D000905 ORTHO05D000749 8.8e-30 133.7 108 52.8
Eucgr.F00965 Eucalyptus grandis HOM05D000905 ORTHO05D000749 8.8e-30 133.7 108 54.6
Medtr3g050060 Medicago truncatula HOM05D000905 ORTHO05D000749 8.8e-30 133.7 108 59.3
TAR629G1358 Trochodendron aralioides HOM05D000905 ORTHO05D000749 8.8e-30 133.7 108 54.6
Oeu032449.1 Olea europaea HOM05D000905 ORTHO05D000749 2.5e-29 132.1 108 52.8
Peaxi162Scf00450g00847 Petunia axillaris HOM05D000905 ORTHO05D000749 2.5e-29 132.1 108 53.7
PSO541G6243 Papaver somniferum HOM05D000905 ORTHO05D000749 3.3e-29 131.7 108 54.6
Psat5g183280 Pisum sativum HOM05D000905 ORTHO05D000749 4.3e-29 131.3 108 58.3
TPR.G16589 Trifolium pratense HOM05D000905 ORTHO05D000749 5.7e-29 131.0 108 58.3
MD03G1206600 Malus domestica HOM05D000905 ORTHO05D000749 7.4e-29 130.6 108 51.9
SGA_v2.0_scaffold8G04302 Striga asiatica HOM05D000905 ORTHO05D000749 2.8e-28 128.6 109 52.3
MBI02_g28335_MAGBIO Magnolia biondii HOM05D000905 ORTHO05D000749 3.7e-28 128.3 108 54.6
ATR0752G147 Amborella trichopoda HOM05D000905 ORTHO05D000749 4.8e-28 127.9 108 57.4
Sc03g0008750 Simmondsia chinensis HOM05D000905 ORTHO05D000749 1.4e-27 126.3 103 49.5
Zm00001eb106100 Zea mays HOM05D000905 ORTHO05D000749 6.9e-27 124.0 104 50.0
PSO832G2245 Papaver somniferum HOM05D000905 ORTHO05D000749 1.5e-26 122.9 100 54.0
Gohir.D07G224950 Gossypium hirsutum HOM05D000905 ORTHO05D000749 4.5e-26 121.3 84 61.9
HanXRQChr08g0217991 Helianthus annuus HOM05D000905 ORTHO05D000749 4.5e-26 121.3 100 51.0
SGA_v2.0_scaffold9G05062 Striga asiatica HOM05D000905 ORTHO05D000749 4.5e-26 121.3 109 49.5
CDE12G0721 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 1.0e-25 120.2 108 52.8
Os07g0520400 Oryza sativa ssp. japonica HOM05D000905 ORTHO05D000749 2.2e-25 119.0 104 49.0
PSO210G2593 Papaver somniferum HOM05D000905 ORTHO05D000749 2.2e-25 119.0 100 53.0
SHI31840 Sapria himalayana HOM05D000905 ORTHO05D000749 5.0e-25 117.9 104 51.9
CSS0029322 Camellia sinensis var. sinensis HOM05D000905 ORTHO05D000749 1.9e-24 115.9 85 56.5
TAR627G0121 Trochodendron aralioides HOM05D000905 ORTHO05D000749 4.2e-24 114.8 84 59.5
Zm00001eb322820 Zea mays HOM05D000905 ORTHO05D000749 4.2e-24 114.8 104 46.2
Sed0008924 Sechium edule HOM05D000905 ORTHO05D000749 6.1e-23 110.9 102 48.0
CDE05G1758 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 6.7e-22 107.5 108 47.2
Aqoxy1G03293 Aquilegia oxysepala HOM05D000905 ORTHO05D000749 8.8e-22 107.1 104 47.1
CDE05G2004 Ceratophyllum demersum HOM05D000905 ORTHO05D000749 8.8e-22 107.1 108 46.3
Oeu042921.1 Olea europaea HOM05D000905 ORTHO05D000749 1.5e-21 106.3 91 49.5
AL746U10010 Arabidopsis lyrata HOM05D000217 ORTHO05D000121 4.4e-21 104.8 99 52.5
SEGI_21255 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 3.1e-19 98.6 104 43.3
Lj4g0024955 Lotus japonicus HOM05D000905 ORTHO05D000749 4.2e-16 88.2 92 45.7
Ah.04g165690 Amaranthus hybridus HOM05D000905 ORTHO05D000749 7.2e-16 87.4 62 58.1
ECA236G5048 Erigeron canadensis HOM05D000905 ORTHO05D000749 6.1e-15 84.3 62 53.2
HPP92_017606 Vanilla planifolia HOM05D000905 ORTHO05D000749 3.1e-11 72.0 67 52.2
Pp3c23_19130 Physcomitrium patens HOM05D000905 ORTHO05D000749 4.1e-11 71.6 98 35.7
SMO147G0001 Selaginella moellendorffii HOM05D000905 ORTHO05D000749 1.2e-10 70.1 100 36.0
Pp3c20_6790 Physcomitrium patens HOM05D000905 ORTHO05D000749 5.9e-10 67.8 98 34.7
Pp3c8_14290 Physcomitrium patens HOM05D000905 ORTHO05D000749 2.2e-09 65.9 97 33.0
SEGI_18148 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 3.2e-08 62.0 108 31.5
AL7G17770 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 6.1e-07 57.8 39 66.7
SEGI_30691 Sequoiadendron giganteum HOM05D000905 ORTHO05D000749 1.4e-06 56.6 101 28.7
DCAR_014584 Daucus carota HOM05D000905 ORTHO05D000749 1.8e-06 56.2 98 27.6
PSO063G0310 Papaver somniferum HOM05D000905 ORTHO05D000749 1.8e-06 56.2 98 29.6
PSO170G0491 Papaver somniferum HOM05D000905 ORTHO05D000749 1.8e-06 56.2 98 29.6
AUR62027985 Chenopodium quinoa HOM05D000905 ORTHO05D000749 4.0e-06 55.1 98 27.6
FvH4_4g05970 Fragaria vesca HOM05D000905 ORTHO05D000749 4.0e-06 55.1 98 26.5
Sed0005399 Sechium edule HOM05D000905 ORTHO05D000749 4.0e-06 55.1 96 28.1
Carub.0013s0002 Capsella rubella HOM05D000905 ORTHO05D000749 5.2e-06 54.7 98 29.6
Actinidia38531 Actinidia chinensis HOM05D000905 ORTHO05D000749 6.7e-06 54.3 98 26.5
Pp3c24_6410 Physcomitrium patens HOM05D000905 ORTHO05D000749 6.7e-06 54.3 98 27.6
AL3G44100 Arabidopsis lyrata HOM05D000905 ORTHO05D000749 8.8e-06 53.9 98 29.6
AT2G07170 Arabidopsis thaliana HOM05D000905 ORTHO05D000749 8.8e-06 53.9 98 29.6


User provided reference genes

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