Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.8e-95 353.2 280 100.0
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.8e-95 353.2 280 100.0
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 4.1e-95 352.1 280 99.3
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 5.3e-95 351.7 280 99.6
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 5.3e-95 351.7 280 99.6
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 5.3e-87 325.1 280 95.4
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.2e-86 323.9 280 94.6
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 1.9e-84 316.6 280 92.9
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 3.0e-82 309.3 280 92.9
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.5e-81 307.0 281 91.1
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-81 307.0 280 92.5
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 4.4e-81 305.4 280 92.1
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 5.7e-81 305.1 280 92.5
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 2.2e-80 303.1 284 90.5
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.3e-79 298.5 281 90.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 1.3e-77 293.9 268 91.8
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 8.5e-77 291.2 278 88.5
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 3.1e-71 272.7 271 87.8
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.1e-68 264.2 280 84.6
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 9.4e-68 261.2 280 83.6
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.4e-66 257.3 280 83.9
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 3.0e-66 256.1 280 83.6
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.0e-66 255.8 280 82.1
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 8.8e-66 254.6 282 83.3
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 5.7e-65 251.9 279 82.8
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 7.5e-65 251.5 279 82.8
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 7.5e-65 251.5 279 82.4
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 7.5e-65 251.5 279 82.8
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 4.8e-64 248.8 279 82.1
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-62 243.8 280 80.0
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-61 241.1 269 83.3
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 1.7e-61 240.4 268 82.8
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.0e-61 238.8 268 82.8
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 5.0e-61 238.8 268 82.8
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 1.5e-60 237.3 268 83.2
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 4.2e-60 235.7 274 72.3
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 4.7e-59 232.3 270 80.4
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 8.0e-59 231.5 268 82.1
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.0e-58 231.1 268 81.3
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.4e-58 230.7 268 81.7
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.8e-58 230.3 268 81.7
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.8e-58 230.3 268 81.7
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 2.3e-58 229.9 255 83.1
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 1.2e-57 227.6 268 80.2
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 4.4e-57 225.7 254 83.1
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 3.7e-56 222.6 268 78.4
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 3.7e-56 222.6 267 79.8
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 4.9e-56 222.2 271 78.6
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 6.3e-56 221.9 252 82.5
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.3e-56 221.9 256 81.6
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 6.3e-56 221.9 278 78.8
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 6.3e-56 221.9 270 79.6
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 8.3e-56 221.5 267 79.0
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 1.1e-55 221.1 268 79.5
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.1e-55 221.1 268 79.5
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 1.1e-55 221.1 262 80.5
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 3.1e-55 219.5 268 78.7
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 5.4e-55 218.8 269 78.4
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 5.4e-55 218.8 275 76.0
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.6e-54 217.2 269 78.4
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.6e-54 217.2 254 82.7
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 2.0e-54 216.9 254 80.3
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 2.7e-54 216.5 266 79.3
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 3.5e-54 216.1 271 77.9
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.5e-54 215.7 266 77.8
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 5.9e-54 215.3 256 79.3
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 7.7e-54 214.9 267 79.8
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 1.3e-53 214.2 267 76.8
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.7e-53 213.8 269 78.1
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 2.3e-53 213.4 254 80.7
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 2.9e-53 213.0 279 74.6
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 3.8e-53 212.6 266 77.1
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 6.6e-53 211.8 269 76.2
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 6.6e-53 211.8 274 72.3
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 8.6e-53 211.5 269 77.3
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 8.6e-53 211.5 269 77.3
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.9e-52 210.3 268 79.1
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 2.5e-52 209.9 268 77.2
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.5e-52 209.9 267 77.5
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 3.3e-52 209.5 270 77.0
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 3.3e-52 209.5 268 76.9
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 3.3e-52 209.5 274 69.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 5.5e-52 208.8 268 77.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.2e-52 208.4 267 77.2
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 1.2e-51 207.6 271 74.9
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.2e-51 207.6 259 78.4
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 2.1e-51 206.8 254 78.0
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 4.7e-51 205.7 268 76.5
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 4.7e-51 205.7 268 76.5
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 8.0e-51 204.9 278 75.2
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 1.0e-50 204.5 271 74.5
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.4e-50 204.1 270 49.3
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.8e-50 203.8 269 76.2
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 1.8e-50 203.8 269 76.2
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.8e-50 203.8 270 76.3
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.0e-50 203.0 264 75.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.0e-50 203.0 270 74.4
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 4.0e-50 202.6 281 62.6
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 4.0e-50 202.6 270 75.2
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 6.8e-50 201.8 254 77.6
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 1.5e-49 200.7 270 73.3
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 3.4e-49 199.5 254 76.8
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 4.4e-49 199.1 230 85.2
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-48 197.6 266 73.3
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 1.3e-48 197.6 266 73.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 8.3e-48 194.9 252 77.8
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 8.3e-48 194.9 280 72.9
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 1.4e-47 194.1 275 73.5
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 1.4e-47 194.1 269 74.7
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.8e-47 193.7 252 78.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 1.8e-47 193.7 254 78.3
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 4.1e-47 192.6 266 74.1
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 4.1e-47 192.6 266 72.2
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 9.2e-47 191.4 257 77.8
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 9.2e-47 191.4 268 73.9
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 2.0e-46 190.3 271 73.4
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 2.0e-46 190.3 271 72.7
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 4.6e-46 189.1 266 69.5
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 5.9e-46 188.7 245 78.8
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 5.9e-46 188.7 266 74.8
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 1.1e-44 184.5 274 68.2
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 1.1e-44 184.5 270 66.7
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.5e-44 184.1 266 74.1
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.9e-44 183.7 230 82.2
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 4.3e-44 182.6 272 73.9
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 5.6e-44 182.2 269 73.2
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 2.1e-43 180.3 244 78.3
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 4.7e-43 179.1 269 71.4
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.4e-42 177.6 270 72.6
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 2.3e-42 176.8 273 72.5
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 5.2e-42 175.6 255 70.2
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.5e-41 174.1 279 40.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 3.4e-41 172.9 238 80.3
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 7.5e-41 171.8 256 73.0
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 9.8e-41 171.4 260 71.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 1.7e-40 170.6 261 70.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 1.1e-39 167.9 253 73.5
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 1.2e-38 164.5 232 79.7
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.6e-38 164.1 229 79.9
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.0e-38 163.7 235 78.3
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 4.3e-36 156.0 210 82.4
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-32 143.3 242 72.7
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 1.2e-30 137.9 209 78.9
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 1.7e-29 134.0 79 78.5
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 6.2e-27 125.6 87 70.1
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 8.1e-27 125.2 213 76.5
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 5.2e-26 122.5 87 73.6
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.9e-26 121.7 100 63.0
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 1.5e-25 120.9 277 63.2
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 8.4e-24 115.2 280 62.5
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 1.4e-23 114.4 267 53.2
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 2.4e-23 113.6 283 56.5
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 1.5e-20 104.4 83 61.4
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 2.5e-20 103.6 82 61.0
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.0e-17 94.0 79 62.0
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 4.6e-14 82.8 80 60.0
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 1.1e-10 71.6 58 62.1
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 4.2e-07 59.7 234 58.1
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 1.2e-06 58.2 53 49.1
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 1.6e-06 57.8 104 33.7
CSS0003369 Camellia sinensis var. sinensis HOM05D000021 ORTHO05D000010 2.7e-06 57.0 101 33.7
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 7.9e-06 55.5 75 40.0


User provided reference genes

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