Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48767 Brassica carinata HOM05D000688 ORTHO05D012820 1.5e-95 352.8 175 100.0
C01p46100 Brassica napus HOM05D000688 ORTHO05D012820 8.8e-80 300.4 175 87.4
BolC1t04572H Brassica oleracea HOM05D000688 ORTHO05D012820 8.8e-80 300.4 175 87.4
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 2.2e-30 136.3 75 86.7
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 2.2e-30 136.3 75 86.7
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 2.2e-30 136.3 75 86.7
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 4.9e-30 135.2 75 85.3
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 2.7e-28 129.4 75 82.7
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 2.7e-28 129.4 75 82.7
A01p36300 Brassica napus HOM05D000688 ORTHO05D012820 5.6e-26 121.7 62 95.2
BraA01t03702Z Brassica rapa HOM05D000688 ORTHO05D012820 5.6e-26 121.7 62 95.2
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 1.2e-25 120.6 75 76.0
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 1.6e-25 120.2 75 77.3
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 2.1e-25 119.8 75 77.3
AL3G38680 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 2.8e-25 119.4 75 77.3
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 2.8e-25 119.4 75 77.3
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 2.8e-25 119.4 75 72.0
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 3.6e-25 119.0 76 76.3
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 4.7e-25 118.6 75 74.7
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 8.1e-25 117.9 75 77.3
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 1.8e-24 116.7 75 73.3
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 1.8e-24 116.7 75 73.3
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 1.8e-24 116.7 75 74.7
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 3.1e-24 115.9 122 52.5
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 3.1e-24 115.9 74 73.0
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 6.8e-24 114.8 76 68.4
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 6.8e-24 114.8 75 70.7
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 6.8e-24 114.8 75 68.0
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 8.9e-24 114.4 122 51.6
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 8.9e-24 114.4 122 51.6
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 8.9e-24 114.4 75 72.0
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.2e-23 114.0 75 68.0
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 72.0
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 72.0
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 70.7
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 69.3
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 70.7
Oeu019307.1 Olea europaea HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 70.7
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.5e-23 113.6 75 72.0
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 2.0e-23 113.2 75 72.0
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 2.6e-23 112.8 75 69.3
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 2.6e-23 112.8 75 70.7
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 2.6e-23 112.8 75 70.7
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 2.6e-23 112.8 75 68.0
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 3.4e-23 112.5 75 70.7
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 3.4e-23 112.5 75 69.3
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 4.4e-23 112.1 75 66.7
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 4.4e-23 112.1 75 70.7
Sabra18G0021700 Salix brachista HOM05D000688 ORTHO05D004737 5.8e-23 111.7 73 71.2
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 7.5e-23 111.3 75 69.3
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 9.8e-23 110.9 75 69.3
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 9.8e-23 110.9 122 52.5
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 9.8e-23 110.9 75 70.7
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 9.8e-23 110.9 75 69.3
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 1.3e-22 110.5 77 71.4
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 1.3e-22 110.5 75 69.3
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.3e-22 110.5 75 69.3
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.3e-22 110.5 75 69.3
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 1.3e-22 110.5 75 70.7
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 1.7e-22 110.2 75 70.7
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 1.7e-22 110.2 75 69.3
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 2.9e-22 109.4 75 69.3
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 2.9e-22 109.4 75 70.7
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 2.9e-22 109.4 75 69.3
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 2.9e-22 109.4 75 69.3
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 3.7e-22 109.0 75 69.3
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 3.7e-22 109.0 73 69.9
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 8.3e-22 107.8 75 66.7
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 8.3e-22 107.8 75 66.7
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 8.3e-22 107.8 75 66.7
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 8.3e-22 107.8 76 63.2
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 1.4e-21 107.1 75 64.0
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 1.4e-21 107.1 75 69.3
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 1.4e-21 107.1 76 63.2
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 1.9e-21 106.7 75 68.0
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 2.4e-21 106.3 75 66.7
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 3.2e-21 105.9 75 66.7
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 3.2e-21 105.9 71 69.0
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 3.2e-21 105.9 76 63.2
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 3.2e-21 105.9 75 65.3
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 5.4e-21 105.1 75 68.0
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 5.4e-21 105.1 73 64.4
Nitab4.5_0006753g0010 Nicotiana tabacum HOM05D000688 ORTHO05D004737 5.4e-21 105.1 74 66.2
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 7.1e-21 104.8 71 67.6
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 9.2e-21 104.4 75 66.7
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 9.2e-21 104.4 75 65.3
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.2e-20 104.0 75 66.7
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 1.2e-20 104.0 75 66.7
PGSC0003DMG400015258 Solanum tuberosum HOM05D000688 ORTHO05D004737 1.2e-20 104.0 75 66.7
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 1.6e-20 103.6 75 68.0
Nitab4.5_0002575g0060 Nicotiana tabacum HOM05D000688 ORTHO05D004737 3.5e-20 102.4 75 65.3
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 3.5e-20 102.4 75 65.3
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 4.6e-20 102.1 75 62.7
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 7.8e-20 101.3 67 73.1
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 1.0e-19 100.9 75 65.3
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 1.3e-19 100.5 75 61.3
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.3e-19 100.5 75 65.3
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.7e-19 100.1 67 70.1
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.7e-19 100.1 67 70.1
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 1.7e-19 100.1 67 70.1
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 2.3e-19 99.8 75 64.0
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 3.9e-19 99.0 76 60.5
RcHm_v2.0_Chr5g0042221 Rosa chinensis HOM05D000688 ORTHO05D012820 3.9e-19 99.0 74 64.9
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 5.1e-19 98.6 75 65.3
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 8.6e-19 97.8 72 61.1
CSS0020218 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.5e-18 96.3 70 64.3
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 3.3e-18 95.9 73 63.0
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 9.5e-18 94.4 76 56.6
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 1.6e-17 93.6 75 61.3
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.6e-17 93.6 78 56.4
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 1.6e-17 93.6 76 56.6
SalBow7G2920 Salvia bowleyana HOM05D000428 ORTHO05D012820 1.6e-17 93.6 63 71.4
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 2.1e-17 93.2 75 61.3
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 4.7e-17 92.0 75 58.7
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 6.2e-17 91.7 71 62.0
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 6.2e-17 91.7 71 62.0
BolC5t33551H Brassica oleracea HOM05D000688 ORTHO05D004737 1.4e-16 90.5 106 48.1
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 8.9e-16 87.8 73 58.9
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 1.5e-15 87.0 75 57.3
SEGI_32927 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 1.5e-15 87.0 75 60.0
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 2.0e-15 86.7 122 45.9
SEGI_35893 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 4.4e-15 85.5 75 60.0
SEGI_08147 Sequoiadendron giganteum HOM05D000688 ORTHO05D004737 1.3e-14 84.0 75 58.7
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 1.4e-13 80.5 75 57.3
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.9e-13 80.1 75 53.3
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.9e-13 80.1 75 53.3
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 2.4e-13 79.7 75 54.7
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 4.1e-13 79.0 75 56.0
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 4.1e-13 79.0 73 54.8
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 4.1e-13 79.0 73 54.8
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 9.2e-13 77.8 73 54.8
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 9.2e-13 77.8 71 56.3
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 9.2e-13 77.8 71 56.3
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 1.2e-12 77.4 75 52.0
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 2.7e-12 76.3 71 54.9
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 3.5e-12 75.9 76 50.0
FvH4_3g23871 Fragaria vesca HOM05D000688 ORTHO05D012820 4.6e-12 75.5 48 70.8
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 1.0e-11 74.3 76 50.0
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 2.3e-11 73.2 75 50.7
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 3.9e-11 72.4 75 49.3
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 3.9e-11 72.4 75 49.3
A01p36290 Brassica napus HOM05D000688 ORTHO05D012820 8.6e-11 71.2 43 81.4
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.5e-10 70.5 75 48.0
ECA238G0018 Erigeron canadensis HOM05D000688 ORTHO05D004737 5.6e-10 68.6 75 45.3
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 5.6e-10 68.6 88 43.2
BolC5t33519H Brassica oleracea HOM05D000688 ORTHO05D012820 1.6e-09 67.0 36 83.3
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 2.1e-09 66.6 88 43.2
BolC5t33550H Brassica oleracea HOM05D000688 ORTHO05D012820 1.4e-08 63.9 36 80.6
Lsat_1_v5_gn_9_69080 Lactuca sativa HOM05D000688 ORTHO05D004737 5.2e-08 62.0 41 53.7
Pp3c4_16140 Physcomitrium patens HOM05D000688 ORTHO05D004737 2.0e-07 60.1 76 40.8
Nitab4.5_0005346g0010 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.6e-07 59.7 48 56.2
AagrBONN_evm.TU.Sc2ySwM_228.1461 Anthoceros agrestis HOM05D000688 ORTHO05D004737 1.3e-06 57.4 76 40.8
Nitab4.5_0001723g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 1.7e-06 57.0 49 55.1
Nitab4.5_0002565g0020 Nicotiana tabacum HOM05D000688 ORTHO05D012820 2.2e-06 56.6 48 54.2
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 3.8e-06 55.8 45 51.1
Nitab4.5_0001033g0090 Nicotiana tabacum HOM05D000688 ORTHO05D004737 4.9e-06 55.5 41 53.7


User provided reference genes

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