Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.3e-79 299.7 149 100.0
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.2e-61 240.0 121 100.0
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.2e-61 240.0 121 100.0
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 2.8e-34 149.1 101 74.3
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 2.8e-34 149.1 101 74.3
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.6e-34 148.7 101 76.2
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 8.1e-34 147.5 101 75.2
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 8.9e-33 144.1 103 71.8
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 8.9e-33 144.1 101 73.3
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 8.9e-33 144.1 101 70.3
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 2.0e-32 142.9 101 72.3
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.0e-32 142.9 101 72.3
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 4.4e-32 141.7 101 71.3
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 3.8e-31 138.7 101 72.3
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 8.4e-31 137.5 101 68.3
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 3.5e-29 132.1 99 65.7
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 9.9e-24 114.0 130 46.9
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 6.9e-17 91.3 109 46.8
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 3.4e-16 89.0 86 57.0
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.2e-15 86.3 120 45.0
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.2e-15 86.3 120 45.0
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 2.9e-15 85.9 81 58.0
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.8e-15 85.5 116 44.8
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 8.4e-15 84.3 83 56.6
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 1.1e-14 84.0 109 46.8
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-14 84.0 81 56.8
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 1.1e-14 84.0 112 45.5
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 1.1e-14 84.0 132 37.1
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.4e-14 83.6 84 53.6
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 1.4e-14 83.6 112 44.6
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 2.4e-14 82.8 120 41.7
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 3.2e-14 82.4 74 55.4
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 4.2e-14 82.0 99 47.5
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 4.2e-14 82.0 105 47.6
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 7.1e-14 81.3 91 50.5
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 9.3e-14 80.9 104 43.3
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 9.3e-14 80.9 104 43.3
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.2e-13 80.5 99 46.5
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.2e-13 80.5 104 45.2
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.2e-13 80.5 93 44.1
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 1.2e-13 80.5 77 57.1
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 2.7e-13 79.3 93 46.2
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 2.7e-13 79.3 93 46.2
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 3.5e-13 79.0 77 57.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 3.5e-13 79.0 89 50.6
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 4.6e-13 78.6 86 46.5
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 6.0e-13 78.2 80 52.5
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 6.0e-13 78.2 75 57.3
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 7.9e-13 77.8 89 44.9
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 7.9e-13 77.8 113 40.7
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 7.9e-13 77.8 91 50.5
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 7.9e-13 77.8 103 38.8
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 1.0e-12 77.4 104 43.3
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.3e-12 77.0 109 40.4
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 1.3e-12 77.0 106 41.5
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 1.8e-12 76.6 89 49.4
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 2.3e-12 76.3 123 39.0
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 2.3e-12 76.3 112 40.2
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.3e-12 76.3 75 56.0
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 2.3e-12 76.3 106 41.5
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 3.9e-12 75.5 91 46.2
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 3.9e-12 75.5 102 42.2
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 5.1e-12 75.1 96 41.7
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 5.1e-12 75.1 104 41.3
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 6.7e-12 74.7 102 43.1
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 6.7e-12 74.7 85 50.6
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 6.7e-12 74.7 115 41.7
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 8.7e-12 74.3 83 49.4
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 8.7e-12 74.3 74 52.7
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 8.7e-12 74.3 104 40.4
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 8.7e-12 74.3 70 51.4
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.9e-11 73.2 97 41.2
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 3.3e-11 72.4 126 35.7
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 4.3e-11 72.0 85 44.7
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 4.3e-11 72.0 74 54.1
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 7.4e-11 71.2 75 50.7
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 9.6e-11 70.9 73 52.1
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 1.3e-10 70.5 99 39.4
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 3.7e-10 68.9 75 52.0
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 4.8e-10 68.6 85 45.9
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 4.8e-10 68.6 85 49.4
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 6.2e-10 68.2 76 50.0
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 8.1e-10 67.8 92 43.5
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 8.1e-10 67.8 120 35.8
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 8.1e-10 67.8 74 47.3
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 8.1e-10 67.8 74 47.3
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 1.1e-09 67.4 49 69.4
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 1.1e-09 67.4 114 35.1
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.1e-09 67.4 69 47.8
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 1.4e-09 67.0 77 48.1
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.4e-09 67.0 112 39.3
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 1.4e-09 67.0 76 47.4
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.8e-09 66.6 135 31.1
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 2.4e-09 66.2 94 43.6
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 3.1e-09 65.9 137 33.6
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 5.3e-09 65.1 71 47.9
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 6.9e-09 64.7 71 52.1
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 1.2e-08 63.9 93 43.0
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 2.0e-08 63.2 105 36.2
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 2.0e-08 63.2 118 34.7
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 5.8e-08 61.6 69 47.8
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.9e-07 59.3 81 46.9
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.1e-06 57.4 81 43.2
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.4e-06 57.0 89 39.3
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 9.3e-06 54.3 72 38.9


User provided reference genes

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