Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48231 Brassica carinata HOM05D007888 ORTHO05D009976 2.3e-87 325.5 159 100.0
BolC1t05238H Brassica oleracea HOM05D007888 ORTHO05D009976 8.2e-77 290.4 154 90.9
C01p52980 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-76 290.0 154 90.9
BolC1t05230H Brassica oleracea HOM05D007888 ORTHO05D009976 4.7e-72 274.6 153 84.3
BolC1t05231H Brassica oleracea HOM05D007888 ORTHO05D009976 2.1e-64 249.2 153 79.7
C01p52960 Brassica napus HOM05D007888 ORTHO05D009976 1.8e-63 246.1 149 80.5
BolC1t05234H Brassica oleracea HOM05D007888 ORTHO05D009976 1.8e-63 246.1 149 80.5
BolC1t05233H Brassica oleracea HOM05D007888 ORTHO05D009976 2.3e-63 245.7 149 79.9
BolC1t05235H Brassica oleracea HOM05D007888 ORTHO05D009976 5.2e-63 244.6 149 79.9
BolC1t05232H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-63 244.2 149 79.9
BolC1t05237H Brassica oleracea HOM05D007888 ORTHO05D009976 2.6e-62 242.3 149 79.9
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 4.4e-62 241.5 155 77.4
C01p52940 Brassica napus HOM05D007888 ORTHO05D009976 2.8e-61 238.8 149 79.2
BolC1t05236H Brassica oleracea HOM05D007888 ORTHO05D009976 3.1e-60 235.3 149 77.9
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-58 229.9 155 74.8
BcaB04g21088 Brassica carinata HOM05D007888 ORTHO05D009976 2.3e-58 229.2 154 72.7
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-57 226.9 155 74.2
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-57 226.9 155 73.5
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.1e-57 226.9 155 74.2
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-57 226.5 155 72.9
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 2.5e-57 225.7 155 73.5
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 3.3e-57 225.3 155 74.2
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 3.3e-57 225.3 155 73.5
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 5.5e-57 224.6 155 73.5
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 5.5e-57 224.6 155 73.5
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 7.2e-57 224.2 155 72.9
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 9.5e-57 223.8 155 72.9
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 2.1e-56 222.6 155 72.3
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 2.8e-56 222.2 155 72.9
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 4.7e-56 221.5 155 72.9
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 8.0e-56 220.7 155 71.6
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 2.3e-55 219.2 155 71.6
BolC1t05222H Brassica oleracea HOM05D007888 ORTHO05D009976 1.5e-54 216.5 157 70.1
BcaC09g48238 Brassica carinata HOM05D007888 ORTHO05D009976 3.7e-53 211.8 149 72.5
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 1.1e-52 210.3 154 70.1
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 4.1e-52 208.4 156 64.7
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 4.1e-52 208.4 156 64.7
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 9.2e-52 207.2 154 67.5
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 5.6e-49 198.0 152 62.5
C01p52790 Brassica napus HOM05D007888 ORTHO05D009976 2.1e-48 196.1 143 70.6
BolC1t05217H Brassica oleracea HOM05D007888 ORTHO05D009976 1.4e-47 193.4 143 69.9
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.8e-47 193.0 152 60.5
C01p53150 Brassica napus HOM05D007888 ORTHO05D009976 3.2e-44 182.2 135 68.1
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 3.2e-44 182.2 158 60.1
BcaB03g11708 Brassica carinata HOM05D007888 ORTHO05D009976 1.6e-43 179.9 153 61.4
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-36 157.1 92 82.6
A06p13980 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-31 140.6 111 60.4
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.4e-30 135.2 156 46.8
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 5.4e-28 128.3 153 41.8
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 5.4e-28 128.3 154 46.1
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.1e-27 126.3 157 42.0
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.0e-26 124.0 153 40.5
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 1.1e-25 120.6 152 44.1
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.3e-25 118.6 153 39.2
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.1e-24 116.3 155 40.0
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 1.1e-23 114.0 72 75.0
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 8.9e-23 110.9 151 40.4
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.2e-22 110.5 144 41.7
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 1.2e-22 110.5 152 41.4
BcaB07g29934 Brassica carinata HOM05D007888 ORTHO05D009976 3.4e-22 109.0 156 37.8
BcaC03g17926 Brassica carinata HOM05D007888 ORTHO05D009976 8.4e-21 104.4 156 39.1
C02p59850 Brassica napus HOM05D007888 ORTHO05D009976 8.4e-21 104.4 156 39.1
BolC2t12043H Brassica oleracea HOM05D007888 ORTHO05D009976 8.4e-21 104.4 156 39.1
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 1.9e-20 103.2 144 40.3
A02p39970 Brassica napus HOM05D007888 ORTHO05D009976 5.4e-20 101.7 156 37.8
BraA02t08959Z Brassica rapa HOM05D007888 ORTHO05D009976 5.4e-20 101.7 156 37.8
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 6.0e-19 98.2 149 32.2
C01p52920 Brassica napus HOM05D007888 ORTHO05D009976 1.0e-18 97.4 82 61.0
C01p52930 Brassica napus HOM05D007888 ORTHO05D009976 1.0e-18 97.4 82 61.0
C01p52950 Brassica napus HOM05D007888 ORTHO05D009976 1.0e-18 97.4 82 61.0
BraA06t26681Z Brassica rapa HOM05D007888 ORTHO05D009976 3.9e-18 95.5 96 53.1
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 8.7e-18 94.4 153 36.6
Thhalv10005295m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 2.8e-16 89.4 153 34.0
Sp4g04710 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.8e-16 89.4 132 38.6
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 1.4e-15 87.0 148 33.8
Sp4g04700 Schrenkiella parvula HOM05D007888 ORTHO05D009976 1.2e-11 73.9 116 36.2
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.7e-10 70.1 138 28.3
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 2.3e-10 69.7 111 32.4
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.9e-10 68.9 163 27.0
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 5.1e-10 68.6 156 27.6
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.3e-08 63.9 162 26.5
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.3e-08 63.9 166 28.9
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.8e-08 62.8 126 30.2
CARHR112790 Cardamine hirsuta HOM05D007888 ORTHO05D009976 2.8e-08 62.8 65 38.5
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 3.6e-08 62.4 108 35.2
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 8.1e-08 61.2 152 27.0
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 3.1e-07 59.3 166 27.1
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.1e-07 59.3 124 26.6
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.0e-07 58.9 146 27.4
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 4.0e-07 58.9 144 29.9
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 2.6e-06 56.2 153 28.1


User provided reference genes

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