Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.1e-107 391.3 191 100.0
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 6.6e-105 384.0 191 97.9
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 1.9e-104 382.5 191 97.4
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 5.6e-104 380.9 191 96.3
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 6.2e-103 377.5 188 96.8
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 8.0e-103 377.1 188 96.8
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 1.0e-102 376.7 191 96.3
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-102 376.7 188 96.3
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.8e-102 375.9 188 96.3
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 2.3e-102 375.6 191 95.8
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 2.3e-102 375.6 189 96.3
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.0e-102 374.8 191 95.8
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 6.8e-102 374.0 188 96.3
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 1.5e-101 372.9 188 96.3
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 7.0e-99 364.0 191 92.7
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 3.9e-97 358.2 191 89.0
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 88.0
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.5e-96 356.3 191 88.0
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 4.3e-96 354.8 191 87.4
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 7.3e-96 354.0 191 86.9
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 1.6e-95 352.8 191 88.0
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 2.1e-95 352.4 191 87.4
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 2.8e-95 352.1 189 87.3
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 2.8e-95 352.1 190 87.4
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 2.8e-95 352.1 190 87.4
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 3.6e-95 351.7 191 87.4
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 6.2e-95 350.9 191 86.4
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 8.1e-95 350.5 188 88.8
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 8.1e-95 350.5 190 87.4
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 87.4
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 8.1e-95 350.5 191 86.9
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 1.1e-94 350.1 189 86.8
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.4e-94 349.7 191 85.9
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 1.4e-94 349.7 191 85.9
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.8e-94 349.4 191 86.4
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 2.3e-94 349.0 191 86.4
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 85.3
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 85.3
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 3.1e-94 348.6 191 85.3
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 85.3
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 4.0e-94 348.2 191 85.9
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 5.2e-94 347.8 189 86.2
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 5.2e-94 347.8 189 85.7
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 6.8e-94 347.4 191 85.3
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 6.8e-94 347.4 191 86.4
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 6.8e-94 347.4 191 84.8
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 6.8e-94 347.4 189 86.8
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 8.9e-94 347.1 191 85.9
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.2e-93 346.7 191 85.3
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.2e-93 346.7 191 85.3
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 1.2e-93 346.7 191 84.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.5e-93 346.3 189 85.7
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 1.5e-93 346.3 189 85.2
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.0e-93 345.9 191 85.3
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 2.0e-93 345.9 191 85.3
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 2.0e-93 345.9 191 84.3
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 2.6e-93 345.5 191 85.3
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.6e-93 345.5 191 84.8
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.4e-93 345.1 191 84.8
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 4.4e-93 344.7 191 84.3
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 5.8e-93 344.4 189 85.7
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.8e-93 344.4 189 85.7
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 5.8e-93 344.4 189 85.7
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 5.8e-93 344.4 191 84.3
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 7.5e-93 344.0 191 84.3
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 7.5e-93 344.0 189 85.2
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 7.5e-93 344.0 191 84.8
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 9.8e-93 343.6 191 84.8
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 9.8e-93 343.6 191 83.8
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 1.7e-92 342.8 188 85.1
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 1.7e-92 342.8 191 83.8
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.7e-92 342.8 188 85.1
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.7e-92 342.8 189 85.2
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.7e-92 342.8 201 82.1
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.2e-92 342.4 190 84.7
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 2.9e-92 342.0 189 85.2
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 6.4e-92 340.9 191 83.2
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 8.3e-92 340.5 191 83.8
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 1.4e-91 339.7 189 84.1
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 1.4e-91 339.7 191 82.7
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.9e-91 339.3 191 83.2
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 7.1e-91 337.4 188 82.4
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 9.2e-91 337.0 188 85.6
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 2.1e-90 335.9 198 80.8
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 3.5e-90 335.1 195 82.1
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 6.0e-90 334.3 191 87.4
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 1.7e-89 332.8 183 86.3
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 3.9e-89 331.6 210 77.1
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 3.9e-89 331.6 216 75.0
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 5.1e-89 331.3 214 76.2
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.5e-88 329.7 191 77.5
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 2.5e-88 328.9 191 77.5
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 3.3e-88 328.6 193 81.3
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 5.6e-88 327.8 188 81.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 9.5e-88 327.0 232 71.6
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 9.5e-88 327.0 201 78.6
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 8.9e-86 320.5 191 75.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 8.9e-86 320.5 191 75.4
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 3.4e-85 318.5 189 74.6
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 5.8e-85 317.8 189 75.1
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 2.9e-84 315.5 191 73.8
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 2.4e-83 312.4 173 83.2
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.4e-83 312.4 173 83.8
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 3.2e-83 312.0 188 71.8
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-80 303.5 181 80.1
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 1.1e-80 303.5 181 80.1
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.1e-78 297.0 188 69.1
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 7.6e-77 290.8 158 87.3
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 1.7e-76 289.7 158 85.4
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 8.4e-76 287.3 158 84.2
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.9e-75 286.2 167 79.6
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 4.8e-71 271.6 158 81.0
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 4.5e-69 265.0 171 74.9
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 4.9e-68 261.5 188 65.4
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.4e-67 259.2 207 62.8
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.7e-60 236.5 188 60.6
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 1.1e-59 233.8 140 79.3
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.2e-58 230.3 206 51.5
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 2.8e-55 219.2 106 97.2
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.4e-54 216.9 183 55.2
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 2.0e-53 213.0 113 85.0
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.8e-52 208.8 148 68.9
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 4.2e-51 205.3 112 83.9
Glyma.13G188400 Glycine max HOM05D005009 ORTHO05D006203 2.3e-49 199.5 129 76.7
MD02G1276800 Malus domestica HOM05D005009 ORTHO05D006203 1.9e-48 196.4 109 87.2
HPP92_011756 Vanilla planifolia HOM05D005009 ORTHO05D006203 9.6e-48 194.1 109 84.4
Nitab4.5_0004168g0130 Nicotiana tabacum HOM05D005009 ORTHO05D006203 1.4e-46 190.3 109 82.6
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 2.0e-45 186.4 158 60.1
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 1.0e-36 157.5 82 86.6
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.3e-36 157.1 82 86.6
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 2.2e-36 156.4 80 87.5
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.9e-36 156.0 82 85.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 8.5e-36 154.5 83 81.9
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.6e-34 150.2 156 48.7
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 4.4e-32 142.1 71 93.0
Glyma.13G188051 Glycine max HOM05D005009 ORTHO05D006203 1.3e-31 140.6 84 79.8
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 1.4e-30 137.1 74 82.4
Sc11g0006340 Simmondsia chinensis HOM05D005009 ORTHO05D006203 1.4e-30 137.1 79 81.0
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 3.4e-29 132.5 68 91.2
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 3.4e-29 132.5 68 91.2
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 4.5e-29 132.1 71 84.5
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.0e-28 131.0 68 89.7
Prupe.3G123900 Prunus persica HOM05D005009 ORTHO05D006203 7.9e-26 121.3 84 76.2
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 5.2e-17 92.0 51 80.4
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 4.4e-16 89.0 47 83.0
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 1.0e-12 77.8 38 92.1
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 1.0e-12 77.8 38 92.1
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 1.0e-12 77.8 38 92.1
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 1.0e-12 77.8 38 92.1
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 1.3e-12 77.4 37 94.6


User provided reference genes

Program Settings