Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48229 Brassica carinata HOM05D005009 ORTHO05D006203 4.5e-35 150.6 70 100.0
C01p53030 Brassica napus HOM05D005009 ORTHO05D006203 4.5e-35 150.6 70 100.0
BolC1t05246H Brassica oleracea HOM05D005009 ORTHO05D006203 1.3e-34 149.1 70 98.6
A03p37590 Brassica napus HOM05D005009 ORTHO05D006203 1.1e-30 136.0 70 91.4
BolC3t16835H Brassica oleracea HOM05D005009 ORTHO05D006203 1.1e-30 136.0 70 91.4
BraA03t12913Z Brassica rapa HOM05D005009 ORTHO05D006203 1.1e-30 136.0 70 91.4
C03p45580 Brassica napus HOM05D005009 ORTHO05D006203 1.9e-30 135.2 70 90.0
A06p13990 Brassica napus HOM05D005009 ORTHO05D006203 2.5e-30 134.8 70 91.4
BcaB04g18685 Brassica carinata HOM05D005009 ORTHO05D006203 4.3e-30 134.0 68 91.2
BcaC09g48230 Brassica carinata HOM05D005009 ORTHO05D006203 4.3e-30 134.0 68 91.2
Sp3g10520 Schrenkiella parvula HOM05D005009 ORTHO05D006203 4.3e-30 134.0 68 91.2
C01p53010 Brassica napus HOM05D005009 ORTHO05D006203 5.7e-30 133.7 70 90.0
BcaC01g04053 Brassica carinata HOM05D005009 ORTHO05D006203 7.4e-30 133.3 68 89.7
BolC1t05245H Brassica oleracea HOM05D005009 ORTHO05D006203 9.7e-30 132.9 69 88.4
Carub.0003s1167 Capsella rubella HOM05D005009 ORTHO05D006203 3.7e-29 131.0 68 89.7
Thhalv10021577m.g Eutrema salsugineum HOM05D005009 ORTHO05D006203 3.7e-29 131.0 68 89.7
AL3G23960 Arabidopsis lyrata HOM05D005009 ORTHO05D006203 4.8e-29 130.6 68 88.2
AT3G12300 Arabidopsis thaliana HOM05D005009 ORTHO05D006203 4.8e-29 130.6 68 88.2
Aa31LG3G6530 Aethionema arabicum HOM05D005009 ORTHO05D006203 1.1e-28 129.4 68 86.8
CARHR086850 Cardamine hirsuta HOM05D005009 ORTHO05D006203 1.1e-28 129.4 68 86.8
THA.LOC104826749 Tarenaya hassleriana HOM05D005009 ORTHO05D006203 1.1e-28 129.4 68 88.2
Migut.B01192 Erythranthe guttata HOM05D005009 ORTHO05D006203 4.1e-28 127.5 68 85.3
Eucgr.G03210 Eucalyptus grandis HOM05D005009 ORTHO05D006203 5.3e-28 127.1 68 85.3
Lj9A658G62 Lonicera japonica HOM05D005009 ORTHO05D006203 5.3e-28 127.1 68 85.3
vmacro21942 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-28 127.1 69 84.1
vmacro23458 Vaccinium macrocarpon HOM05D005009 ORTHO05D006203 5.3e-28 127.1 69 84.1
MBI19_g37444_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 9.1e-28 126.3 69 82.6
MSTRG.20500 Avicennia marina HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
CSS0003702 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.2e-27 125.9 69 82.6
Cc03_g14060 Coffea canephora HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
Haze_02993 Corylus avellana HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
ECA248G2538 Erigeron canadensis HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
Eucgr.E03953 Eucalyptus grandis HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
Lsat_1_v5_gn_1_117041 Lactuca sativa HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
Solyc01g096610.4 Solanum lycopersicum HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
Sopen01g040340 Solanum pennellii HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
PGSC0003DMG401003286 Solanum tuberosum HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
SGA_v2.0_scaffold408G51079 Striga asiatica HOM05D005009 ORTHO05D006203 1.2e-27 125.9 68 83.8
CSS0011052 Camellia sinensis var. sinensis HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
Manes.11G007500 Manihot esculenta HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
Potri.003G193900 Populus trichocarpa HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
PGR031G2406 Punica granatum HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
Rhsim07G0069300 Rhododendron simsii HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
Sabra03G0144600 Salix brachista HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 83.8
SHI34551 Sapria himalayana HOM05D005009 ORTHO05D006203 1.5e-27 125.6 68 86.8
CAN.G134.28 Capsicum annuum HOM05D005009 ORTHO05D006203 2.6e-27 124.8 69 81.2
HanXRQChr11g0341231 Helianthus annuus HOM05D005009 ORTHO05D006203 2.6e-27 124.8 68 82.4
MBI19_g44926_MAGBIO Magnolia biondii HOM05D005009 ORTHO05D006203 2.6e-27 124.8 68 82.4
Nitab4.5_0002838g0060 Nicotiana tabacum HOM05D005009 ORTHO05D006203 2.6e-27 124.8 68 82.4
Peaxi162Scf00220g00315 Petunia axillaris HOM05D005009 ORTHO05D006203 2.6e-27 124.8 68 82.4
Atru.chr12.1310 Acer truncatum HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
Aqoxy2G00437 Aquilegia oxysepala HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
CiPaw.14G009400 Carya illinoinensis HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
Ca_24007_v3 Cicer arietinum L. HOM05D005009 ORTHO05D006203 3.4e-27 124.4 69 81.2
Dinv11234 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
Dinv32009 Davidia involucrata HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
QL04p021447 Quercus lobata HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
QL07p029267 Quercus lobata HOM05D005009 ORTHO05D006203 3.4e-27 124.4 68 82.4
Actinidia06220 Actinidia chinensis HOM05D005009 ORTHO05D006203 4.5e-27 124.0 68 82.4
Cpa.g.sc82.9 Carica papaya HOM05D005009 ORTHO05D006203 4.5e-27 124.0 68 82.4
Cfa001149 Carpinus fangiana HOM05D005009 ORTHO05D006203 4.5e-27 124.0 68 82.4
DCAR_006603 Daucus carota HOM05D005009 ORTHO05D006203 4.5e-27 124.0 68 82.4
Duzib068G0995 Durio zibethinus HOM05D005009 ORTHO05D006203 4.5e-27 124.0 68 82.4
Sed0026819 Sechium edule HOM05D005009 ORTHO05D006203 4.5e-27 124.0 69 82.6
ATR0307G112 Amborella trichopoda HOM05D005009 ORTHO05D006203 5.9e-27 123.6 68 80.9
SEGI_18977 Sequoiadendron giganteum HOM05D005009 ORTHO05D006203 5.9e-27 123.6 68 80.9
arahy.Tifrunner.gnm1.ann1.CDA2TW Arachis hypogaea HOM05D005009 ORTHO05D006203 7.7e-27 123.2 69 79.7
EL10Ac2g02762 Beta vulgaris HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 80.9
AUR62031741 Chenopodium quinoa HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 80.9
AUR62032626 Chenopodium quinoa HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 80.9
ClCG05G027020 Citrullus lanatus HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 82.4
MELO3C034019.2 Cucumis melo HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 82.4
CsaV3_5G036940 Cucumis sativus L. HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 82.4
Thecc.03G114300 Theobroma cacao HOM05D005009 ORTHO05D006203 7.7e-27 123.2 68 80.9
Actinidia07967 Actinidia chinensis HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
COL.COLO4_32171 Corchorus olitorius HOM05D000011 ORTHO05D006203 1.0e-26 122.9 68 80.9
Duzib084G0080 Durio zibethinus HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
FvH4_7g03830 Fragaria vesca HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
FAN03G3221 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
FAN06G1190 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
FAN10G3328 Fragaria x ananassa HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
Gohir.A03G073900 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
Gohir.D03G100300 Gossypium hirsutum HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
Gorai.003G105400 Gossypium raimondii HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
PSO339G0131 Papaver somniferum HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
PSO384G0249 Papaver somniferum HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
Prupe.2G043300 Prunus persica HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
RcHm_v2.0_Chr1g0327201 Rosa chinensis HOM05D005009 ORTHO05D006203 1.0e-26 122.9 68 80.9
unitig_22.g5330 Utricularia gibba HOM05D005009 ORTHO05D006203 1.3e-26 122.5 68 80.9
Zm00001eb317990 Zea mays HOM05D005009 ORTHO05D006203 1.3e-26 122.5 68 79.4
Ciclev10002585m.g Citrus clementina HOM05D005009 ORTHO05D006203 1.7e-26 122.1 68 79.4
Os09g0510200 Oryza sativa ssp. japonica HOM05D005009 ORTHO05D006203 1.7e-26 122.1 68 79.4
VMungo1127G1850 Vigna mungo HOM05D005009 ORTHO05D006203 1.7e-26 122.1 69 78.3
GSVIVG01036607001 Vitis vinifera HOM05D005009 ORTHO05D006203 1.7e-26 122.1 68 80.9
arahy.Tifrunner.gnm1.ann1.SBUN5C Arachis hypogaea HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
Glyma.13G190100 Glycine max HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
Lj3g0027433 Lotus japonicus HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
Lalb_Chr19g0132931 Lupinus albus HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
MD02G1276900 Malus domestica HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
Phvul.011G192750 Phaseolus vulgaris HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
Psat4g146480 Pisum sativum HOM05D005009 ORTHO05D006203 2.2e-26 121.7 68 79.4
GSVIVG01028667001 Vitis vinifera HOM05D005009 ORTHO05D006203 2.2e-26 121.7 69 78.3
Glyma.09G090300 Glycine max HOM05D005009 ORTHO05D006203 2.9e-26 121.3 68 79.4
Glyma.13G192001 Glycine max HOM05D005009 ORTHO05D006203 2.9e-26 121.3 68 79.4
Hma1.2p1_0837F.1_g226250 Hydrangea macrophylla HOM05D005009 ORTHO05D006203 2.9e-26 121.3 69 79.7
Nn7g36825 Nelumbo nucifera HOM05D005009 ORTHO05D006203 2.9e-26 121.3 68 79.4
HPP92_011747 Vanilla planifolia HOM05D005009 ORTHO05D006203 3.8e-26 120.9 68 77.9
CDE08G0779 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 5.0e-26 120.6 68 77.9
Medtr8g040630 Medicago truncatula HOM05D005009 ORTHO05D006203 5.0e-26 120.6 68 77.9
Pp3c7_7130 Physcomitrium patens HOM05D005009 ORTHO05D006203 5.0e-26 120.6 69 75.4
TPR.G8532 Trifolium pratense HOM05D005009 ORTHO05D006203 5.0e-26 120.6 68 77.9
TWI15G1146 Tripterygium wilfordii HOM05D005009 ORTHO05D006203 5.0e-26 120.6 68 77.9
AagrBONN_evm.TU.Sc2ySwM_340.215 Anthoceros agrestis HOM05D005009 ORTHO05D006203 6.5e-26 120.2 68 76.5
Mapoly0109s0062 Marchantia polymorpha HOM05D005009 ORTHO05D006203 6.5e-26 120.2 68 76.5
Pp3c16_8300 Physcomitrium patens HOM05D005009 ORTHO05D006203 8.5e-26 119.8 68 73.5
TAR633G2352 Trochodendron aralioides HOM05D005009 ORTHO05D006203 8.5e-26 119.8 68 77.9
PRCOL_00001494 Prasinoderma coloniale HOM05D005009 ORTHO05D006203 1.1e-25 119.4 68 75.0
Glyma.13G184700 Glycine max HOM05D005009 ORTHO05D006203 1.4e-25 119.0 69 75.4
Cre07.g351650 Chlamydomonas reinhardtii HOM05D005009 ORTHO05D006203 1.9e-25 118.6 68 75.0
MCO01G737 Micromonas commoda HOM05D005009 ORTHO05D006203 1.9e-25 118.6 68 73.5
CANSAT01G2494 Cannabis sativa HOM05D005009 ORTHO05D006203 2.5e-25 118.2 68 77.9
MD07G1044300 Malus domestica HOM05D005009 ORTHO05D006203 2.5e-25 118.2 68 77.9
SMO137G0211 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 2.5e-25 118.2 69 73.9
CDE08G1579 Ceratophyllum demersum HOM05D005009 ORTHO05D006203 3.2e-25 117.9 68 76.5
SMO137G0355 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 5.5e-25 117.1 68 73.5
Ah.01g018000 Amaranthus hybridus HOM05D005009 ORTHO05D006203 7.2e-25 116.7 63 84.1
Oeu064146.2 Olea europaea HOM05D005009 ORTHO05D006203 1.2e-24 115.9 68 77.9
Hund13390 Selenicereus undatus HOM05D005009 ORTHO05D006203 1.2e-24 115.9 68 77.9
Pp3c25_460 Physcomitrium patens HOM05D005009 ORTHO05D006203 4.7e-24 114.0 69 72.5
Haze_26638 Corylus avellana HOM05D005009 ORTHO05D006203 4.4e-22 107.5 67 73.1
SMO352G0037 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 7.7e-19 96.7 69 58.0
SMO232G0039 Selaginella moellendorffii HOM05D005009 ORTHO05D006203 1.7e-18 95.5 62 67.7
Pp3c6_12450 Physcomitrium patens HOM05D005009 ORTHO05D006203 1.4e-15 85.9 68 51.5
Sed0013386 Sechium edule HOM05D005009 ORTHO05D006203 2.2e-13 78.6 42 83.3
Manes.04G156350 Manihot esculenta HOM05D005009 ORTHO05D006203 1.6e-11 72.4 39 79.5
A01p39420 Brassica napus HOM05D005009 ORTHO05D006203 7.7e-11 70.1 38 84.2
ClCG05G014250 Citrullus lanatus HOM05D005009 ORTHO05D006203 1.0e-10 69.7 38 76.3
A03p22660 Brassica napus HOM05D005009 ORTHO05D033042 2.2e-10 68.6 37 86.5
A10p02030 Brassica napus HOM05D005009 ORTHO05D006203 2.2e-10 68.6 37 86.5
C03p63540 Brassica napus HOM05D005009 ORTHO05D033042 2.2e-10 68.6 37 86.5
BraA02t08111Z Brassica rapa HOM05D005009 ORTHO05D033042 2.2e-10 68.6 37 86.5
arahy.Tifrunner.gnm1.ann1.WDN55T Arachis hypogaea HOM05D000001 ORTHO05D009381 5.5e-09 63.9 35 77.1
HPP92_011758 Vanilla planifolia HOM05D005009 ORTHO05D006203 5.7e-06 53.9 28 75.0


User provided reference genes

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