Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 2.4e-179 632.1 335 100.0
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 2.1e-175 619.0 335 98.2
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 1.4e-171 606.3 335 96.7
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 6.4e-164 580.9 335 93.4
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 1.6e-162 576.2 338 91.7
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 1.9e-155 552.7 337 87.5
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 4.6e-154 548.1 334 85.6
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 1.0e-153 547.0 338 87.0
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 3.0e-153 545.4 340 85.9
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 3.3e-152 542.0 339 85.5
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 2.0e-141 506.1 342 81.3
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 4.1e-118 428.7 344 68.3
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 2.5e-107 392.9 347 62.8
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 4.2e-107 392.1 342 62.0
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 4.8e-103 378.6 343 61.5
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 1.1e-102 377.5 351 60.7
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.4e-102 376.3 357 60.2
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.4e-102 376.3 343 58.3
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 2.4e-102 376.3 339 61.7
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 3.1e-102 375.9 355 59.7
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 5.9e-101 371.7 343 60.6
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 1.5e-99 367.1 340 60.9
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 2.5e-99 366.3 333 61.9
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 6.1e-98 361.7 337 58.8
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 8.0e-98 361.3 344 59.9
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.4e-97 360.5 342 58.5
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 2.3e-97 359.8 346 59.8
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 5.2e-97 358.6 346 56.6
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 1.2e-96 357.5 336 55.7
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 2.6e-96 356.3 340 58.5
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 2.6e-96 356.3 325 58.8
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 7.5e-96 354.8 333 57.1
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 7.5e-96 354.8 348 58.0
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 9.8e-96 354.4 340 57.4
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.8e-95 352.8 337 58.5
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 4.9e-95 352.1 337 57.6
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 3.1e-94 349.4 337 55.8
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 4.1e-94 349.0 350 57.7
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 9.2e-94 347.8 348 56.6
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.2e-93 347.4 333 56.2
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.2e-93 347.4 344 56.4
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 2.0e-93 346.7 345 58.8
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 3.5e-93 345.9 347 56.8
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 7.8e-93 344.7 341 56.0
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 1.0e-92 344.4 336 58.0
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.0e-92 344.4 306 59.8
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.7e-92 343.6 337 55.5
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.7e-92 343.6 337 55.5
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 2.9e-92 342.8 341 55.7
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 1.1e-91 340.9 336 57.1
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 3.3e-91 339.3 342 55.0
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 4.3e-91 339.0 342 55.6
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 5.6e-91 338.6 344 56.4
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 9.5e-91 337.8 338 55.6
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 1.6e-90 337.0 328 56.4
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 8.0e-90 334.7 339 56.3
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 8.0e-90 334.7 344 56.7
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 1.4e-89 334.0 341 55.7
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 1.5e-88 330.5 347 52.4
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 2.0e-88 330.1 347 55.0
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 2.6e-88 329.7 325 58.8
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 4.4e-88 328.9 305 58.0
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 5.7e-88 328.6 343 52.5
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 7.5e-88 328.2 338 54.7
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 1.2e-85 320.9 324 58.6
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 3.0e-84 316.2 350 50.9
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 8.6e-84 314.7 331 50.8
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 1.9e-83 313.5 292 56.8
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 2.5e-83 313.2 387 47.8
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 3.3e-83 312.8 390 46.9
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 3.3e-83 312.8 289 58.8
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 9.5e-83 311.2 321 52.0
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 8.0e-82 308.1 340 51.8
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 1.1e-81 307.8 332 51.8
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 2.3e-81 306.6 292 55.5
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 5.2e-81 305.4 327 52.9
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 1.5e-80 303.9 318 54.4
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 2.6e-80 303.1 340 51.5
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 4.4e-80 302.4 338 53.0
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 9.2e-78 294.7 320 54.7
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 3.0e-76 289.7 346 50.3
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 1.9e-75 287.0 316 48.4
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 3.1e-73 279.6 340 48.2
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 8.9e-73 278.1 291 49.5
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 4.4e-72 275.8 343 49.3
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 3.3e-67 259.6 286 46.5
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 3.2e-62 243.0 348 44.0
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 6.2e-58 228.8 337 44.5
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 3.1e-57 226.5 322 41.6
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 1.7e-52 210.7 246 45.5
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 3.0e-52 209.9 217 52.1
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 7.3e-51 205.3 282 45.4
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 8.1e-50 201.8 204 52.0
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 8.1e-50 201.8 294 40.8
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 1.9e-38 164.1 118 74.6
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 3.9e-36 156.4 136 66.9
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 7.6e-32 142.1 95 68.4
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 2.2e-31 140.6 299 31.1
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 3.3e-27 126.7 248 38.3
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 2.0e-24 117.5 298 28.9
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 6.5e-23 112.5 129 55.0
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 6.5e-23 112.5 164 46.3
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 1.4e-22 111.3 116 53.4
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.5e-16 91.3 304 24.3
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 1.8e-12 77.8 72 51.4
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.1e-09 67.0 63 54.0
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.9e-06 57.8 76 56.6


User provided reference genes

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