Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC08g46016 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1578.5 856 100.0
C06p38110 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1570.4 856 99.6
BolC6t38908H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1560.8 856 98.8
A07p34470 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1408.7 827 92.4
C06p42040 Brassica napus HOM05D005394 ORTHO05D006909 0.0e+00 1400.2 827 91.8
Sp5g22930 Schrenkiella parvula HOM05D005394 ORTHO05D006909 0.0e+00 1394.0 833 91.6
BcaC08g46216 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1391.3 822 92.0
BolC6t39222H Brassica oleracea HOM05D005394 ORTHO05D006909 0.0e+00 1387.9 822 91.8
AL2G26730 Arabidopsis lyrata HOM05D005394 ORTHO05D006909 0.0e+00 1360.5 834 88.7
BcaB03g15386 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1355.5 756 95.4
Carub.0002s1442 Capsella rubella HOM05D005394 ORTHO05D006909 0.0e+00 1349.7 831 88.0
CARHR060570 Cardamine hirsuta HOM05D005394 ORTHO05D006909 0.0e+00 1347.8 834 86.8
AT1G67930 Arabidopsis thaliana HOM05D005394 ORTHO05D006909 0.0e+00 1334.7 834 87.1
Aa31sc829G10 Aethionema arabicum HOM05D005394 ORTHO05D006909 0.0e+00 1315.1 831 86.0
BraA07t31074Z Brassica rapa HOM05D005394 ORTHO05D006909 0.0e+00 1305.4 734 93.7
BcaB03g15148 Brassica carinata HOM05D005394 ORTHO05D006909 0.0e+00 1230.3 691 91.5
THA.LOC104825567 Tarenaya hassleriana HOM05D005394 ORTHO05D006909 0.0e+00 1215.7 791 83.1
Ciclev10030699m.g Citrus clementina HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 788 74.7
Sabra05G0154700 Salix brachista HOM05D005394 ORTHO05D006909 0.0e+00 1131.7 840 71.4
Thhalv10018283m.g Eutrema salsugineum HOM05D005394 ORTHO05D006909 0.0e+00 1127.5 624 92.5
Manes.01G130300 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1125.5 820 74.9
arahy.Tifrunner.gnm1.ann1.3I6JR3 Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1121.7 816 73.9
COL.COLO4_10088 Corchorus olitorius HOM05D005394 ORTHO05D006909 0.0e+00 1116.7 815 75.2
arahy.Tifrunner.gnm1.ann1.C2BK4Q Arachis hypogaea HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 829 72.9
CsaV3_6G013780 Cucumis sativus L. HOM05D005394 ORTHO05D006909 0.0e+00 1114.0 814 72.6
Manes.02G088100 Manihot esculenta HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 815 73.9
Potri.005G203900 Populus trichocarpa HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 840 70.5
Thecc.04G175300 Theobroma cacao HOM05D005394 ORTHO05D006909 0.0e+00 1105.9 814 74.1
TWI14G0801 Tripterygium wilfordii HOM05D005394 ORTHO05D006909 0.0e+00 1105.1 818 70.5
ClCG02G018460 Citrullus lanatus HOM05D005394 ORTHO05D006909 0.0e+00 1104.7 802 71.6
Atru.BG.36.p Acer truncatum HOM05D005394 ORTHO05D006909 0.0e+00 1103.2 790 72.8
MELO3C019674.2 Cucumis melo HOM05D005394 ORTHO05D006909 0.0e+00 1099.0 800 73.5
Gohir.A10G140600 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1098.6 818 73.7
Medtr5g091250 Medicago truncatula HOM05D005394 ORTHO05D006909 0.0e+00 1097.0 807 70.9
Ca_06271_v3 Cicer arietinum L. HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 807 71.0
Gorai.011G139100 Gossypium raimondii HOM05D005394 ORTHO05D006909 0.0e+00 1096.3 818 73.8
Cfa023066 Carpinus fangiana HOM05D005394 ORTHO05D006909 0.0e+00 1093.6 809 71.4
Psat0s1569g0040 Pisum sativum HOM05D005394 ORTHO05D006909 0.0e+00 1092.0 815 69.8
Prupe.3G175300 Prunus persica HOM05D005394 ORTHO05D006909 0.0e+00 1092.0 825 69.6
Lalb_Chr17g0348211 Lupinus albus HOM05D005394 ORTHO05D006909 0.0e+00 1090.5 826 71.7
Gohir.D10G126100 Gossypium hirsutum HOM05D005394 ORTHO05D006909 0.0e+00 1089.3 818 73.6
Sed0020842 Sechium edule HOM05D005394 ORTHO05D006909 0.0e+00 1087.4 806 71.2
RcHm_v2.0_Chr2g0151781 Rosa chinensis HOM05D005394 ORTHO05D006909 0.0e+00 1086.2 820 70.0
FAN14G2062 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 808 70.0
MD09G1149900 Malus domestica HOM05D005394 ORTHO05D006909 0.0e+00 1081.6 809 69.3
FvH4_6g38530 Fragaria vesca HOM05D005394 ORTHO05D006909 0.0e+00 1080.1 808 69.9
GSVIVG01020852001 Vitis vinifera HOM05D005394 ORTHO05D006909 0.0e+00 1077.8 812 69.6
FAN05G5751 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1076.2 808 69.8
FAN02G2503 Fragaria x ananassa HOM05D005394 ORTHO05D006909 0.0e+00 1075.1 808 69.6
Sed0013102 Sechium edule HOM05D005394 ORTHO05D006909 5.9e-312 1074.3 815 70.7
Phvul.008G193314 Phaseolus vulgaris HOM05D005394 ORTHO05D006909 5.9e-312 1073.9 807 70.8
Glyma.14G029500 Glycine max HOM05D005394 ORTHO05D006909 1.8e-311 1072.4 809 69.8
Haze_13523 Corylus avellana HOM05D005394 ORTHO05D006909 2.9e-311 1071.6 920 64.1
FAN09G4660 Fragaria x ananassa HOM05D005394 ORTHO05D006909 5.3e-311 1070.8 808 69.3
VMungo0647G2040 Vigna mungo HOM05D005394 ORTHO05D006909 1.2e-310 1069.7 818 69.1
TAR626G0164 Trochodendron aralioides HOM05D005394 ORTHO05D006909 1.1e-308 1063.1 830 67.6
Potri.002G058300 Populus trichocarpa HOM05D005394 ORTHO05D006909 5.4e-308 1060.8 841 70.5
Nn8g41245 Nelumbo nucifera HOM05D005394 ORTHO05D006909 1.2e-307 1059.7 816 67.9
PGR042G0197 Punica granatum HOM05D005394 ORTHO05D006909 3.5e-307 1058.1 817 71.2
LjContig00049g0014840 Lotus japonicus HOM05D005394 ORTHO05D006909 3.0e-306 1055.0 756 72.4
QL08p044839 Quercus lobata HOM05D005394 ORTHO05D006909 3.0e-306 1055.0 851 68.0
MD17G1137000 Malus domestica HOM05D005394 ORTHO05D006909 6.6e-306 1053.9 758 71.6
Sopen10g003630 Solanum pennellii HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 820 67.8
PGSC0003DMG400021243 Solanum tuberosum HOM05D005394 ORTHO05D006909 1.6e-304 1049.3 820 67.9
Solyc10g007720.4 Solanum lycopersicum HOM05D005394 ORTHO05D006909 2.1e-304 1048.9 820 67.4
Glyma.02G286300 Glycine max HOM05D005394 ORTHO05D006909 1.4e-303 1046.2 753 71.4
Duzib212G0967 Durio zibethinus HOM05D005394 ORTHO05D006909 2.4e-303 1045.4 816 70.5
Peaxi162Scf00035g02520 Petunia axillaris HOM05D005394 ORTHO05D006909 2.4e-303 1045.4 816 68.9
CANSAT64G3008 Cannabis sativa HOM05D005394 ORTHO05D006909 4.0e-303 1044.6 815 68.5
Aqoxy1G01759 Aquilegia oxysepala HOM05D005394 ORTHO05D006909 5.2e-303 1044.3 820 66.2
HanXRQChr16g0503181 Helianthus annuus HOM05D005394 ORTHO05D006909 6.8e-303 1043.9 818 66.7
Dinv07076 Davidia involucrata HOM05D005394 ORTHO05D006909 2.6e-302 1042.0 797 69.3
CiPaw.03G191600 Carya illinoinensis HOM05D005394 ORTHO05D006909 1.4e-300 1036.2 808 69.7
HanXRQChr09g0276121 Helianthus annuus HOM05D005394 ORTHO05D006909 3.2e-300 1035.0 817 66.7
HanXRQChr17g0559821 Helianthus annuus HOM05D005394 ORTHO05D006909 3.2e-300 1035.0 818 67.4
Nitab4.5_0003104g0050 Nicotiana tabacum HOM05D005394 ORTHO05D006909 3.5e-299 1031.6 819 68.5
PSO675G3098 Papaver somniferum HOM05D005394 ORTHO05D006909 1.3e-298 1029.6 783 68.8
PSO541G2917 Papaver somniferum HOM05D005394 ORTHO05D006909 2.5e-297 1025.4 783 68.6
CSS0015023 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.6e-296 1022.7 759 71.0
CSS0042292 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.8e-296 1021.1 757 71.1
DCAR_009812 Daucus carota HOM05D005394 ORTHO05D006909 8.1e-296 1020.4 808 66.8
Nitab4.5_0002209g0020 Nicotiana tabacum HOM05D005394 ORTHO05D006909 1.1e-295 1020.0 834 68.3
Sabra02G0047500 Salix brachista HOM05D005394 ORTHO05D006909 4.0e-295 1018.1 843 65.7
Lsat_1_v5_gn_8_142320 Lactuca sativa HOM05D005394 ORTHO05D006909 4.4e-294 1014.6 830 66.9
MSTRG.15035 Avicennia marina HOM05D005394 ORTHO05D006909 5.8e-294 1014.2 828 66.5
Cc05_g09680 Coffea canephora HOM05D005394 ORTHO05D006909 1.7e-293 1012.7 835 66.1
MBI16_g26174_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 3.8e-293 1011.5 826 64.3
Sc06g0007690 Simmondsia chinensis HOM05D005394 ORTHO05D006909 4.9e-293 1011.1 809 63.9
EL10Ac9g22847 Beta vulgaris HOM05D005394 ORTHO05D006909 1.6e-291 1006.1 797 66.1
Oeu020932.1 Olea europaea HOM05D005394 ORTHO05D006909 9.6e-289 996.9 883 62.5
unitig_46.g18287 Utricularia gibba HOM05D005394 ORTHO05D006909 5.5e-284 981.1 823 64.5
CDE02G3161 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 7.9e-283 977.2 819 62.9
Ah.01g001930 Amaranthus hybridus HOM05D005394 ORTHO05D006909 3.9e-282 974.9 815 64.7
Eucgr.A02013 Eucalyptus grandis HOM05D005394 ORTHO05D006909 3.4e-278 961.8 668 72.2
SGA_v2.0_scaffold4G02121 Striga asiatica HOM05D005394 ORTHO05D006909 1.0e-277 960.3 899 60.4
Migut.E01770 Erythranthe guttata HOM05D005394 ORTHO05D006909 2.1e-275 952.6 817 63.5
SEGI_12117 Sequoiadendron giganteum HOM05D005394 ORTHO05D006909 5.0e-269 931.4 788 60.8
SHI02103 Sapria himalayana HOM05D005394 ORTHO05D006909 4.2e-268 928.3 793 61.5
ECA233G4606 Erigeron canadensis HOM05D005394 ORTHO05D006909 3.9e-266 921.8 760 66.6
HPP92_002195 Vanilla planifolia HOM05D005394 ORTHO05D006909 2.2e-264 916.0 815 59.0
AUR62015139 Chenopodium quinoa HOM05D005394 ORTHO05D006909 9.0e-263 910.6 647 71.1
AUR62017599 Chenopodium quinoa HOM05D005394 ORTHO05D006909 5.0e-261 904.8 647 70.6
ATR0605G001 Amborella trichopoda HOM05D005394 ORTHO05D006909 7.2e-260 901.0 789 61.9
vmacro00998 Vaccinium macrocarpon HOM05D005394 ORTHO05D006909 9.4e-260 900.6 918 58.3
Lj1A601G23 Lonicera japonica HOM05D005394 ORTHO05D006909 6.7e-250 867.8 635 70.2
Mapoly0082s0010 Marchantia polymorpha HOM05D005394 ORTHO05D006909 7.4e-249 864.4 783 55.8
Zm00001eb286850 Zea mays HOM05D005394 ORTHO05D006909 5.3e-247 858.2 829 58.4
Pp3c10_16550 Physcomitrium patens HOM05D005394 ORTHO05D006909 5.3e-239 831.6 837 52.2
CAN.G2018.3 Capsicum annuum HOM05D005394 ORTHO05D006909 2.0e-238 829.7 568 72.7
Pp3c14_13420 Physcomitrium patens HOM05D005394 ORTHO05D006909 1.6e-235 820.1 785 53.6
SMO266G0070 Selaginella moellendorffii HOM05D005394 ORTHO05D006909 1.5e-228 797.0 788 51.8
CBR_g53704 Chara braunii HOM05D005394 ORTHO05D006909 1.5e-212 743.8 782 49.5
Rhsim12G0008000 Rhododendron simsii HOM05D005394 ORTHO05D006909 3.3e-212 742.7 786 55.6
Actinidia25071 Actinidia chinensis HOM05D005394 ORTHO05D006909 2.3e-202 709.9 828 52.4
Cpa.g.sc2.203 Carica papaya HOM05D005394 ORTHO05D006909 2.4e-183 646.7 427 75.2
Oeu033979.1 Olea europaea HOM05D005394 ORTHO05D006909 5.7e-148 529.3 478 60.9
Actinidia12539 Actinidia chinensis HOM05D005394 ORTHO05D006909 5.1e-141 506.1 440 62.0
Atru.chr6.2063 Acer truncatum HOM05D005394 ORTHO05D006909 4.8e-131 473.0 322 74.5
PRCOL_00001583 Prasinoderma coloniale HOM05D005394 ORTHO05D006909 2.9e-128 463.8 782 36.7
Cre17.g721900 Chlamydomonas reinhardtii HOM05D005394 ORTHO05D006909 1.1e-119 435.3 762 34.6
Cpa.g.sc2.200 Carica papaya HOM05D005394 ORTHO05D006909 1.9e-119 434.5 354 73.2
CDE09G0652 Ceratophyllum demersum HOM05D005394 ORTHO05D006909 4.5e-113 413.3 302 67.5
MBI10_g36389_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 4.4e-108 396.7 279 71.0
MBI10_g36386_MAGBIO Magnolia biondii HOM05D005394 ORTHO05D006909 5.0e-104 383.3 386 54.9
MCO08G047 Micromonas commoda HOM05D005394 ORTHO05D006909 4.9e-91 340.1 855 29.8
Actinidia12538 Actinidia chinensis HOM05D005394 ORTHO05D006909 1.6e-73 282.0 278 56.8
Haze_13526 Corylus avellana HOM05D005394 ORTHO05D006909 4.9e-67 260.4 224 65.6
CSS0027861 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 5.1e-64 250.4 305 48.9
BcaB01g03482 Brassica carinata HOM05D005394 ORTHO05D006909 1.1e-55 222.6 131 87.0
DCAR_032393 Daucus carota HOM05D005394 ORTHO05D011132 1.5e-47 195.7 140 70.0
HanXRQChr14g0428721 Helianthus annuus HOM05D005394 ORTHO05D006909 6.0e-41 173.7 125 69.6
CSS0006481 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 1.0e-40 172.9 142 66.2
CSS0003150 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.3e-31 141.4 152 49.3
CSS0047075 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 3.3e-31 141.4 152 49.3
CSS0027532 Camellia sinensis var. sinensis HOM05D005394 ORTHO05D006909 4.1e-29 134.4 156 51.9
unitig_748.g8066 Utricularia gibba HOM05D005394 ORTHO05D006909 1.7e-27 129.0 110 64.5
BcaB01g03481 Brassica carinata HOM05D005394 ORTHO05D006909 3.5e-20 104.8 64 85.9
Actinidia12535 Actinidia chinensis HOM05D005394 ORTHO05D055987 2.1e-09 68.9 133 42.1
QL02p034830 Quercus lobata HOM05D003913 ORTHO05D004803 3.3e-07 61.6 61 50.8


User provided reference genes

Program Settings