Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g36144 Brassica carinata HOM05D008776 ORTHO05D005587 1.5e-248 862.4 440 100.0
BolC7t41148H Brassica oleracea HOM05D008776 ORTHO05D005587 1.5e-248 862.4 440 100.0
C07p07280 Brassica napus HOM05D008776 ORTHO05D005587 2.7e-242 841.6 440 98.0
A07p04560 Brassica napus HOM05D008776 ORTHO05D005587 1.3e-228 796.2 441 93.0
BraA07t28245Z Brassica rapa HOM05D008776 ORTHO05D005587 1.3e-228 796.2 441 93.0
BcaB03g16349 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-199 698.7 455 83.5
Sp3g29580 Schrenkiella parvula HOM05D008776 ORTHO05D005587 4.2e-171 605.1 470 71.9
Thhalv10022682m.g Eutrema salsugineum HOM05D008776 ORTHO05D005587 1.5e-168 596.7 475 72.2
Carub.0003s3009 Capsella rubella HOM05D008776 ORTHO05D005587 4.0e-166 588.6 469 72.5
AL3G52490 Arabidopsis lyrata HOM05D008776 ORTHO05D005587 6.9e-166 587.8 463 73.4
AT2G16365 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.0e-165 586.3 471 72.0
BraA03t13706Z Brassica rapa HOM05D008776 ORTHO05D005587 8.8e-153 544.3 439 71.1
BcaC01g03031 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-152 543.1 444 71.2
C03p56950 Brassica napus HOM05D008776 ORTHO05D005587 2.0e-152 543.1 444 71.2
BolC3t17973H Brassica oleracea HOM05D008776 ORTHO05D005587 2.0e-152 543.1 444 71.2
A03p45740 Brassica napus HOM05D008776 ORTHO05D005587 7.4e-152 541.2 441 71.0
BcaB08g34642 Brassica carinata HOM05D008776 ORTHO05D005587 1.1e-147 527.3 433 71.4
Aa31LG8G13740 Aethionema arabicum HOM05D008776 ORTHO05D005587 1.1e-115 421.0 484 54.1
CARHR106580 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.1e-70 271.6 210 71.0
THA.LOC104807308 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 1.4e-70 271.2 437 43.5
CARHR106560 Cardamine hirsuta HOM05D008776 ORTHO05D005587 1.1e-59 235.0 244 61.1
THA.LOC104804555 Tarenaya hassleriana HOM05D007001 ORTHO05D005587 4.9e-55 219.5 520 36.3
BcaC02g07919 Brassica carinata HOM05D008776 ORTHO05D005587 4.5e-48 196.4 134 76.1
BcaC05g25214 Brassica carinata HOM05D008776 ORTHO05D005587 2.5e-38 164.1 155 62.6
C04p04170 Brassica napus HOM05D008776 ORTHO05D005587 5.1e-36 156.4 147 61.9
BolC4t22056H Brassica oleracea HOM05D008776 ORTHO05D005587 5.1e-36 156.4 147 61.9
A08p16740 Brassica napus HOM05D008776 ORTHO05D005587 8.8e-36 155.6 304 41.8
BraA08t33639Z Brassica rapa HOM05D008776 ORTHO05D005587 8.8e-36 155.6 304 41.8
C05p54830 Brassica napus HOM05D008776 ORTHO05D005587 2.5e-35 154.1 147 61.2
C01p32810 Brassica napus HOM05D008776 ORTHO05D005587 4.3e-35 153.3 147 61.2
BolC5t29828H Brassica oleracea HOM05D008776 ORTHO05D005587 1.7e-34 151.4 147 60.5
BcaC05g29210 Brassica carinata HOM05D008776 ORTHO05D005587 2.8e-34 150.6 143 60.8
TWI79G0124 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.4e-33 148.3 360 35.6
Cfa004981 Carpinus fangiana HOM05D007001 ORTHO05D005587 2.4e-33 147.5 392 32.7
Manes.04G089500 Manihot esculenta HOM05D007001 ORTHO05D005587 6.9e-33 146.0 394 32.5
Haze_02407 Corylus avellana HOM05D007001 ORTHO05D005587 2.0e-32 144.4 383 34.2
Ciclev10027908m.g Citrus clementina HOM05D007001 ORTHO05D005587 5.9e-32 142.9 391 34.3
CiPaw.05G066600 Carya illinoinensis HOM05D007001 ORTHO05D005587 2.9e-31 140.6 397 33.0
Carub.0007s0575 Capsella rubella HOM05D008776 ORTHO05D005587 3.8e-31 140.2 315 39.4
Duzib052G0704 Durio zibethinus HOM05D007001 ORTHO05D005587 4.2e-30 136.7 358 33.8
TWI31G1402 Tripterygium wilfordii HOM05D007001 ORTHO05D005587 1.6e-29 134.8 367 31.6
AT4G34550 Arabidopsis thaliana HOM05D008776 ORTHO05D005587 2.1e-29 134.4 214 45.3
C09p31770 Brassica napus HOM05D008776 ORTHO05D042895 6.1e-29 132.9 141 56.7
BolC9t56034H Brassica oleracea HOM05D008776 ORTHO05D042895 6.1e-29 132.9 141 56.7
Glyma.12G042500 Glycine max HOM05D007001 ORTHO05D005587 1.0e-28 132.1 356 31.2
RcHm_v2.0_Chr6g0265031 Rosa chinensis HOM05D007001 ORTHO05D005587 3.0e-28 130.6 393 32.6
COL.COLO4_25959 Corchorus olitorius HOM05D007001 ORTHO05D005587 3.9e-28 130.2 392 30.1
Gohir.D12G029100 Gossypium hirsutum HOM05D007001 ORTHO05D005587 5.1e-28 129.8 476 27.7
Atru.chr5.3047 Acer truncatum HOM05D007001 ORTHO05D005587 1.1e-27 128.6 364 31.9
MD10G1072800 Malus domestica HOM05D007001 ORTHO05D005587 1.1e-27 128.6 357 35.3
BcaC09g49800 Brassica carinata HOM05D008776 ORTHO05D005587 2.0e-27 127.9 143 56.6
Gorai.008G029800 Gossypium raimondii HOM05D007001 ORTHO05D005587 2.0e-27 127.9 476 27.5
Manes.11G085600 Manihot esculenta HOM05D007001 ORTHO05D005587 2.0e-27 127.9 401 29.2
Glyma.11G116700 Glycine max HOM05D007001 ORTHO05D005587 5.7e-27 126.3 344 32.6
Duzib132G0641 Durio zibethinus HOM05D007001 ORTHO05D005587 7.4e-27 125.9 339 34.2
QL11p044451 Quercus lobata HOM05D007001 ORTHO05D005587 7.4e-27 125.9 416 32.7
CSS0022058 Camellia sinensis var. sinensis HOM05D007001 ORTHO05D005587 9.7e-27 125.6 356 34.3
BcaB03g11826 Brassica carinata HOM05D008776 ORTHO05D005587 1.7e-26 124.8 301 39.2
Cpa.g.sc17.13 Carica papaya HOM05D007001 ORTHO05D005587 1.7e-26 124.8 367 33.0
Sabra09G0090900 Salix brachista HOM05D007001 ORTHO05D005587 8.2e-26 122.5 352 32.7
FvH4_2g09190 Fragaria vesca HOM05D007001 ORTHO05D005587 4.1e-25 120.2 394 32.5
Lalb_Chr19g0138701 Lupinus albus HOM05D007001 ORTHO05D005587 7.0e-25 119.4 342 31.6
MD05G1064100 Malus domestica HOM05D007001 ORTHO05D005587 1.2e-24 118.6 337 30.9
Thecc.02G082800 Theobroma cacao HOM05D007001 ORTHO05D005587 1.2e-24 118.6 399 30.3
CiPaw.06G134300 Carya illinoinensis HOM05D007001 ORTHO05D005587 4.5e-24 116.7 362 30.7
Medtr4g070420 Medicago truncatula HOM05D007001 ORTHO05D005587 4.5e-24 116.7 376 30.1
Phvul.011G044100 Phaseolus vulgaris HOM05D007001 ORTHO05D005587 5.9e-24 116.3 344 32.3
GSVIVG01023803001 Vitis vinifera HOM05D007001 ORTHO05D005587 5.9e-24 116.3 345 32.2
Migut.N01249 Erythranthe guttata HOM05D007001 ORTHO05D005587 2.2e-23 114.4 496 28.4
Prupe.8G094200 Prunus persica HOM05D007001 ORTHO05D005587 6.5e-23 112.8 323 34.1
Actinidia36006 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.1e-22 112.1 357 31.7
VMungo1127G1486 Vigna mungo HOM05D007001 ORTHO05D005587 1.9e-22 111.3 332 32.2
FAN27G0151 Fragaria x ananassa HOM05D007001 ORTHO05D005587 4.2e-22 110.2 379 30.9
Lj3g0024948 Lotus japonicus HOM05D007001 ORTHO05D005587 9.4e-22 109.0 353 30.9
PGR042G0047 Punica granatum HOM05D007001 ORTHO05D005587 1.2e-21 108.6 392 31.1
Actinidia00536 Actinidia chinensis HOM05D007001 ORTHO05D005587 1.6e-21 108.2 354 31.9
Rhsim11G0179000 Rhododendron simsii HOM05D007001 ORTHO05D005587 2.1e-21 107.8 342 31.3
Lalb_Chr03g0025591 Lupinus albus HOM05D007001 ORTHO05D005587 3.6e-21 107.1 358 30.7
Nitab4.5_0000308g0260 Nicotiana tabacum HOM05D007001 ORTHO05D005587 3.6e-21 107.1 445 29.2
TAR376G0762 Trochodendron aralioides HOM05D007001 ORTHO05D005587 3.6e-21 107.1 382 30.1
Psat7g184200 Pisum sativum HOM05D007001 ORTHO05D005587 4.7e-21 106.7 447 27.1
FAN24G0234 Fragaria x ananassa HOM05D007001 ORTHO05D005587 6.1e-21 106.3 379 31.4
Potri.004G157000 Populus trichocarpa HOM05D007001 ORTHO05D005587 8.0e-21 105.9 372 28.2
vmacro02090 Vaccinium macrocarpon HOM05D007001 ORTHO05D005587 8.0e-21 105.9 345 30.1
Sabra04G0104900 Salix brachista HOM05D007001 ORTHO05D005587 1.0e-20 105.5 370 29.2
FAN15G3137 Fragaria x ananassa HOM05D007001 ORTHO05D005587 5.2e-20 103.2 367 30.8
Eucgr.G01689 Eucalyptus grandis HOM05D007001 ORTHO05D005587 1.1e-19 102.1 361 30.2
HanXRQChr03g0074191 Helianthus annuus HOM05D007001 ORTHO05D005587 1.5e-19 101.7 320 31.6
Aqoxy5G01586 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 2.0e-19 101.3 444 25.9
arahy.Tifrunner.gnm1.ann1.M1RWF9 Arachis hypogaea HOM05D007001 ORTHO05D005587 2.6e-19 100.9 310 30.0
DCAR_001566 Daucus carota HOM05D007001 ORTHO05D005587 3.3e-19 100.5 324 31.8
Potri.009G118651 Populus trichocarpa HOM05D007001 ORTHO05D005587 3.3e-19 100.5 290 32.1
C03p85680 Brassica napus HOM05D008776 ORTHO05D005587 9.7e-19 99.0 179 44.1
BolC3t20854H Brassica oleracea HOM05D008776 ORTHO05D005587 9.7e-19 99.0 179 44.1
Ca_20889_v3 Cicer arietinum L. HOM05D007001 ORTHO05D005587 9.7e-19 99.0 341 29.9
arahy.Tifrunner.gnm1.ann1.I3TCZM Arachis hypogaea HOM05D007001 ORTHO05D005587 2.8e-18 97.4 310 29.4
TPR.G22545 Trifolium pratense HOM05D007001 ORTHO05D005587 2.8e-18 97.4 348 28.7
Oeu029153.2 Olea europaea HOM05D007001 ORTHO05D005587 4.8e-18 96.7 322 30.4
BcaC01g00896 Brassica carinata HOM05D008776 ORTHO05D005587 8.2e-18 95.9 197 41.1
Cc02_g17350 Coffea canephora HOM05D007001 ORTHO05D005587 1.8e-17 94.7 342 29.2
AUR62011300 Chenopodium quinoa HOM05D007001 ORTHO05D005587 7.0e-17 92.8 359 29.8
MBI10_g06730_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 7.0e-17 92.8 294 30.6
Nn5g29665 Nelumbo nucifera HOM05D007001 ORTHO05D005587 7.0e-17 92.8 395 27.8
AUR62016758 Chenopodium quinoa HOM05D007001 ORTHO05D005587 1.6e-16 91.7 351 30.2
Nitab4.5_0009972g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.6e-16 91.7 433 27.5
Ah.01g019240 Amaranthus hybridus HOM05D007001 ORTHO05D005587 4.5e-16 90.1 366 30.9
BolC1t03218H Brassica oleracea HOM05D008776 ORTHO05D005587 5.9e-16 89.7 88 60.2
EL10Ac9g21706 Beta vulgaris HOM05D007001 ORTHO05D005587 1.9e-14 84.7 340 28.2
Peaxi162Scf00016g00623 Petunia axillaris HOM05D007001 ORTHO05D005587 1.9e-14 84.7 435 26.4
PGSC0003DMG400000714 Solanum tuberosum HOM05D007001 ORTHO05D005587 2.5e-14 84.3 388 26.0
CsaV3_2G014890 Cucumis sativus L. HOM05D007001 ORTHO05D005587 9.4e-14 82.4 289 30.8
Nitab4.5_0008874g0010 Nicotiana tabacum HOM05D007001 ORTHO05D005587 9.4e-14 82.4 298 30.5
SalBow3G2815 Salvia bowleyana HOM05D007001 ORTHO05D005587 9.4e-14 82.4 386 28.0
Oeu055597.1 Olea europaea HOM05D007001 ORTHO05D005587 1.2e-13 82.0 329 27.4
MELO3C023308.2 Cucumis melo HOM05D007001 ORTHO05D005587 4.7e-13 80.1 280 29.3
Sed0007775 Sechium edule HOM05D007001 ORTHO05D005587 4.7e-13 80.1 287 27.9
CARHR242860 Cardamine hirsuta HOM05D008776 ORTHO05D005587 6.1e-13 79.7 153 41.2
Migut.B00223 Erythranthe guttata HOM05D007001 ORTHO05D005587 1.4e-12 78.6 310 30.0
Lalb_Chr01g0002461 Lupinus albus HOM05D007001 ORTHO05D005587 1.4e-12 78.6 229 32.3
SGA_v2.0_scaffold125G33736 Striga asiatica HOM05D007001 ORTHO05D005587 1.8e-12 78.2 309 29.1
Solyc01g109780.3 Solanum lycopersicum HOM05D007001 ORTHO05D005587 2.3e-12 77.8 317 29.3
ECA240G0129 Erigeron canadensis HOM05D007001 ORTHO05D005587 3.0e-12 77.4 292 28.4
ClCG11G004280 Citrullus lanatus HOM05D007001 ORTHO05D005587 5.2e-12 76.6 307 26.4
PSO675G1875 Papaver somniferum HOM05D007001 ORTHO05D005587 8.8e-12 75.9 275 29.5
Sopen01g051970 Solanum pennellii HOM05D007001 ORTHO05D005587 8.8e-12 75.9 316 28.5
MBI16_g08804_MAGBIO Magnolia biondii HOM05D007001 ORTHO05D005587 1.2e-11 75.5 244 30.3
CDE06G0685 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.5e-11 75.1 200 30.5
Hund06244 Selenicereus undatus HOM05D007001 ORTHO05D005587 9.8e-11 72.4 287 27.5
Nitab4.5_0007728g0020 Nicotiana tabacum HOM05D007001 ORTHO05D005587 1.3e-10 72.0 219 32.4
Sopen10g023370 Solanum pennellii HOM05D007001 ORTHO05D005587 6.3e-10 69.7 208 31.2
Lsat_1_v5_gn_9_108461 Lactuca sativa HOM05D007001 ORTHO05D005587 8.3e-10 69.3 277 28.9
SalBow6G2324 Salvia bowleyana HOM05D007001 ORTHO05D005587 2.4e-09 67.8 364 25.8
Peaxi162Scf00003g01121 Petunia axillaris HOM05D007001 ORTHO05D005587 4.1e-09 67.0 264 29.2
PGSC0003DMG400007729 Solanum tuberosum HOM05D007001 ORTHO05D005587 3.5e-08 63.9 224 28.1
Aqoxy6G01158 Aquilegia oxysepala HOM05D007001 ORTHO05D005587 1.3e-07 62.0 207 30.0
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.7e-07 61.6 247 26.3
Sc08g0000600 Simmondsia chinensis HOM05D007001 ORTHO05D005587 1.7e-07 61.6 185 35.1
BcaC01g00894 Brassica carinata HOM05D000394 ORTHO05D000299 2.9e-07 60.8 64 50.0
BcaC01g00895 Brassica carinata HOM05D008776 ORTHO05D005587 2.9e-07 60.8 64 50.0
PSO170G6310 Papaver somniferum HOM05D007001 ORTHO05D005587 8.5e-07 59.3 287 25.4
PSO764G0276 Papaver somniferum HOM05D007001 ORTHO05D005587 9.4e-06 55.8 287 24.4


User provided reference genes

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