Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC06g34744 Brassica carinata HOM05D006100 ORTHO05D007539 3.0e-60 235.0 118 100.0
C07p25000 Brassica napus HOM05D006100 ORTHO05D007539 3.0e-60 235.0 118 100.0
BolC7t43033H Brassica oleracea HOM05D006100 ORTHO05D007539 1.5e-59 232.6 118 99.2
A07p17150 Brassica napus HOM05D006100 ORTHO05D007539 6.6e-55 217.2 118 94.1
BraA07t29442Z Brassica rapa HOM05D006100 ORTHO05D007539 6.6e-55 217.2 118 94.1
BcaB02g09991 Brassica carinata HOM05D006100 ORTHO05D007539 1.7e-50 202.6 127 82.7
BcaB07g29655 Brassica carinata HOM05D006100 ORTHO05D007539 1.5e-46 189.5 119 81.5
Thhalv10005154m.g Eutrema salsugineum HOM05D006100 ORTHO05D007539 1.2e-43 179.9 118 78.0
AT5G66780 Arabidopsis thaliana HOM05D006100 ORTHO05D007539 2.6e-43 178.7 118 79.7
AL8G44670 Arabidopsis lyrata HOM05D006100 ORTHO05D007539 3.4e-43 178.3 118 78.8
CARHR280920 Cardamine hirsuta HOM05D006100 ORTHO05D007539 4.9e-42 174.5 116 76.7
Sp2g29900 Schrenkiella parvula HOM05D006100 ORTHO05D007539 2.7e-40 168.7 120 74.2
A02p44400 Brassica napus HOM05D006100 ORTHO05D007539 2.3e-39 165.6 120 75.8
BraA02t09357Z Brassica rapa HOM05D006100 ORTHO05D007539 2.3e-39 165.6 120 75.8
Carub.0008s2773 Capsella rubella HOM05D006100 ORTHO05D007539 4.0e-36 154.8 117 70.9
THA.LOC104821276 Tarenaya hassleriana HOM05D006100 ORTHO05D007539 1.2e-32 143.3 124 66.1
BcaC03g18400 Brassica carinata HOM05D006100 ORTHO05D007539 4.2e-25 118.2 134 58.2
Thecc.01G036600 Theobroma cacao HOM05D006100 ORTHO05D007539 1.2e-24 116.7 126 55.6
Lj2g0016254 Lotus japonicus HOM05D006100 ORTHO05D007539 3.5e-24 115.2 125 56.8
Duzib147G1001 Durio zibethinus HOM05D006100 ORTHO05D007539 1.3e-23 113.2 127 52.8
BolC2t12540H Brassica oleracea HOM05D006100 ORTHO05D007539 2.3e-23 112.5 64 89.1
Lalb_Chr09g0322441 Lupinus albus HOM05D006100 ORTHO05D007539 3.0e-23 112.1 124 57.3
C02p64790 Brassica napus HOM05D006100 ORTHO05D007539 3.9e-23 111.7 122 54.9
QL06p045927 Quercus lobata HOM05D006100 ORTHO05D007539 3.3e-22 108.6 124 52.4
Ciclev10026748m.g Citrus clementina HOM05D006100 ORTHO05D007539 7.3e-22 107.5 99 61.6
Haze_15098 Corylus avellana HOM05D006100 ORTHO05D007539 1.3e-21 106.7 106 61.3
MD15G1262900 Malus domestica HOM05D006100 ORTHO05D007539 1.6e-21 106.3 131 49.6
Psat2g159960 Pisum sativum HOM05D006100 ORTHO05D007539 2.1e-21 105.9 124 56.5
Aqoxy6G01099 Aquilegia oxysepala HOM05D006100 ORTHO05D007539 3.6e-21 105.1 128 51.6
CiPaw.02G017200 Carya illinoinensis HOM05D006100 ORTHO05D007539 8.1e-21 104.0 78 70.5
Medtr5g020060 Medicago truncatula HOM05D006100 ORTHO05D007539 8.1e-21 104.0 125 54.4
Prupe.7G153900 Prunus persica HOM05D006100 ORTHO05D007539 8.1e-21 104.0 119 50.4
Aa31LG1G15340 Aethionema arabicum HOM05D006100 ORTHO05D007539 1.1e-20 103.6 66 75.8
Gohir.A10G094900 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.1e-20 103.6 122 53.3
COL.COLO4_22086 Corchorus olitorius HOM05D006100 ORTHO05D007539 1.4e-20 103.2 124 51.6
Dinv39980 Davidia involucrata HOM05D006100 ORTHO05D007539 1.4e-20 103.2 125 51.2
Gohir.A11G184500 Gossypium hirsutum HOM05D006100 ORTHO05D007539 1.8e-20 102.8 106 57.5
Duzib264G0645 Durio zibethinus HOM05D006100 ORTHO05D007539 5.3e-20 101.3 71 73.2
TWI09G0021 Tripterygium wilfordii HOM05D006100 ORTHO05D007539 6.9e-20 100.9 119 54.6
Sed0016253 Sechium edule HOM05D006100 ORTHO05D007539 9.0e-20 100.5 133 50.4
VMungo1215G0978 Vigna mungo HOM05D006100 ORTHO05D007539 9.0e-20 100.5 126 50.0
Lsat_1_v5_gn_4_148381 Lactuca sativa HOM05D006100 ORTHO05D007539 1.5e-19 99.8 83 67.5
Atru.chr3.567 Acer truncatum HOM05D006100 ORTHO05D007539 2.0e-19 99.4 129 52.7
CiPaw.01G037400 Carya illinoinensis HOM05D006100 ORTHO05D007539 2.6e-19 99.0 104 57.7
MD02G1148600 Malus domestica HOM05D006100 ORTHO05D007539 3.4e-19 98.6 122 51.6
HanXRQChr11g0324821 Helianthus annuus HOM05D006100 ORTHO05D007539 4.5e-19 98.2 78 71.8
Phvul.002G029900 Phaseolus vulgaris HOM05D006100 ORTHO05D007539 5.8e-19 97.8 124 50.0
arahy.Tifrunner.gnm1.ann1.L1JEHI Arachis hypogaea HOM05D006100 ORTHO05D007539 7.6e-19 97.4 105 56.2
PGR102G3048 Punica granatum HOM05D006100 ORTHO05D007539 9.9e-19 97.1 83 65.1
RcHm_v2.0_Chr2g0101741 Rosa chinensis HOM05D006100 ORTHO05D007539 9.9e-19 97.1 135 48.1
Glyma.11G067900 Glycine max HOM05D006100 ORTHO05D007539 1.3e-18 96.7 119 52.1
PSO675G2321 Papaver somniferum HOM05D006100 ORTHO05D007539 2.2e-18 95.9 146 46.6
ECA232G0790 Erigeron canadensis HOM05D006100 ORTHO05D007539 2.9e-18 95.5 121 49.6
FAN19G2702 Fragaria x ananassa HOM05D006100 ORTHO05D007539 4.9e-18 94.7 131 48.9
Oeu041448.1 Olea europaea HOM05D006100 ORTHO05D007539 4.9e-18 94.7 126 50.0
FAN26G0501 Fragaria x ananassa HOM05D006100 ORTHO05D007539 6.4e-18 94.4 128 46.9
FvH4_1g13380 Fragaria vesca HOM05D006100 ORTHO05D007539 8.4e-18 94.0 131 48.9
Oeu009416.1 Olea europaea HOM05D006100 ORTHO05D007539 8.4e-18 94.0 126 49.2
Cfa004303 Carpinus fangiana HOM05D006100 ORTHO05D007539 1.4e-17 93.2 104 53.8
PSO541G1538 Papaver somniferum HOM05D006100 ORTHO05D007539 1.9e-17 92.8 148 46.6
FAN23G1739 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.4e-17 92.4 130 46.9
FAN28G1903 Fragaria x ananassa HOM05D006100 ORTHO05D007539 2.4e-17 92.4 110 54.5
Actinidia19182 Actinidia chinensis HOM05D006100 ORTHO05D007539 3.2e-17 92.0 89 58.4
arahy.Tifrunner.gnm1.ann1.IKK69W Arachis hypogaea HOM05D006100 ORTHO05D007539 3.2e-17 92.0 105 54.3
MD15G1262800 Malus domestica HOM05D006100 ORTHO05D007539 3.2e-17 92.0 77 64.9
ClCG01G019510 Citrullus lanatus HOM05D006100 ORTHO05D007539 4.2e-17 91.7 112 50.9
Nn5g29589 Nelumbo nucifera HOM05D006100 ORTHO05D007539 7.1e-17 90.9 127 45.7
FvH4_1g13390 Fragaria vesca HOM05D006100 ORTHO05D007539 9.3e-17 90.5 109 52.3
FAN19G3207 Fragaria x ananassa HOM05D006100 ORTHO05D007539 9.3e-17 90.5 109 52.3
RcHm_v2.0_Chr2g0101751 Rosa chinensis HOM05D006100 ORTHO05D007539 1.2e-16 90.1 109 53.2
Cpa.g.sc6.110 Carica papaya HOM05D006100 ORTHO05D007539 4.6e-16 88.2 132 47.0
PGR119G0418 Punica granatum HOM05D006100 ORTHO05D007539 7.9e-16 87.4 98 53.1
CSS0018588 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 1.0e-15 87.0 124 46.0
CANSAT01G1084 Cannabis sativa HOM05D006100 ORTHO05D007539 1.3e-15 86.7 112 50.9
Gohir.D10G093000 Gossypium hirsutum HOM05D006100 ORTHO05D007539 3.0e-15 85.5 123 48.0
Rhsim08G0115500 Rhododendron simsii HOM05D006100 ORTHO05D007539 5.1e-15 84.7 68 64.7
MD02G1148700 Malus domestica HOM05D006100 ORTHO05D007539 6.7e-15 84.3 123 41.5
Eucgr.I02450 Eucalyptus grandis HOM05D006100 ORTHO05D007539 1.1e-14 83.6 82 59.8
TPR.G34229 Trifolium pratense HOM05D006100 ORTHO05D007539 1.9e-14 82.8 108 50.0
Os03g0723400 Oryza sativa ssp. japonica HOM05D006100 ORTHO05D007539 3.3e-14 82.0 74 56.8
vmacro17841 Vaccinium macrocarpon HOM05D006100 ORTHO05D007539 5.6e-14 81.3 75 56.0
Manes.01G135000 Manihot esculenta HOM05D006100 ORTHO05D007539 7.4e-14 80.9 73 63.0
FAN23G0264 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.3e-13 80.1 77 62.3
FAN28G0382 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.6e-13 79.7 61 67.2
MSTRG.2759 Avicennia marina HOM05D006100 ORTHO05D007539 2.8e-13 79.0 83 56.6
Migut.H00995 Erythranthe guttata HOM05D006100 ORTHO05D007539 4.8e-13 78.2 131 43.5
Nitab4.5_0001385g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 8.1e-13 77.4 125 47.2
CsaV3_6G046200 Cucumis sativus L. HOM05D006100 ORTHO05D007539 1.4e-12 76.6 131 43.5
Nitab4.5_0003233g0010 Nicotiana tabacum HOM05D006100 ORTHO05D007539 1.8e-12 76.3 127 43.3
Nitab4.5_0000434g0150 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.1e-12 75.5 106 50.9
GSVIVG01018974001 Vitis vinifera HOM05D006100 ORTHO05D007539 3.1e-12 75.5 102 49.0
CAN.G358.97 Capsicum annuum HOM05D006100 ORTHO05D007539 4.0e-12 75.1 126 46.0
TAR376G0804 Trochodendron aralioides HOM05D001794 ORTHO05D004177 4.0e-12 75.1 108 45.4
FAN26G1330 Fragaria x ananassa HOM05D006100 ORTHO05D007539 1.2e-11 73.6 62 64.5
AUR62004046 Chenopodium quinoa HOM05D006100 ORTHO05D007539 2.6e-11 72.4 86 52.3
SGA_v2.0_scaffold276G46633 Striga asiatica HOM05D006100 ORTHO05D007539 3.4e-11 72.0 142 40.8
Solyc02g062770.2 Solanum lycopersicum HOM05D006100 ORTHO05D007539 5.8e-11 71.2 79 50.6
Prupe.7G153800 Prunus persica HOM05D006100 ORTHO05D007539 7.6e-11 70.9 130 40.8
PGSC0003DMG400015478 Solanum tuberosum HOM05D006100 ORTHO05D007539 1.3e-10 70.1 122 40.2
EL10Ac6g15568 Beta vulgaris HOM05D006100 ORTHO05D007539 1.7e-10 69.7 77 54.5
Gorai.011G102200 Gossypium raimondii HOM05D006100 ORTHO05D007539 2.2e-10 69.3 87 50.6
Peaxi162Scf00515g00519 Petunia axillaris HOM05D006100 ORTHO05D007539 2.2e-10 69.3 127 45.7
Sopen02g013800 Solanum pennellii HOM05D006100 ORTHO05D007539 2.9e-10 68.9 86 48.8
Solyc02g085330.1 Solanum lycopersicum HOM05D006100 ORTHO05D007539 4.9e-10 68.2 102 48.0
Sopen02g030020 Solanum pennellii HOM05D006100 ORTHO05D007539 6.4e-10 67.8 118 46.6
MBI16_g38642_MAGBIO Magnolia biondii HOM05D006100 ORTHO05D007539 8.4e-10 67.4 85 48.2
HanXRQChr16g0530351 Helianthus annuus HOM05D006100 ORTHO05D007539 1.1e-09 67.0 126 38.1
Peaxi162Scf00008g03716 Petunia axillaris HOM05D006100 ORTHO05D007539 1.9e-09 66.2 61 59.0
MELO3C007824.2 Cucumis melo HOM05D006100 ORTHO05D007539 4.2e-09 65.1 105 43.8
Oeu033643.1 Olea europaea HOM05D006100 ORTHO05D007539 9.3e-09 63.9 50 70.0
unitig_899.g14492 Utricularia gibba HOM05D006100 ORTHO05D007539 9.3e-09 63.9 107 41.1
CSS0029658 Camellia sinensis var. sinensis HOM05D006100 ORTHO05D007539 2.1e-08 62.8 58 55.2
AUR62007561 Chenopodium quinoa HOM05D006100 ORTHO05D007539 2.1e-08 62.8 86 47.7
unitig_21.g20955 Utricularia gibba HOM05D003234 ORTHO05D003635 2.1e-08 62.8 87 48.3
Glyma.16G140500 Glycine max HOM05D006100 ORTHO05D007539 3.5e-08 62.0 108 41.7
Nitab4.5_0000136g0440 Nicotiana tabacum HOM05D006100 ORTHO05D007539 3.5e-08 62.0 159 37.1
CDE01G0731 Ceratophyllum demersum HOM05D006100 ORTHO05D007539 3.9e-07 58.5 79 53.2
DCAR_025920 Daucus carota HOM05D006100 ORTHO05D007539 6.7e-07 57.8 61 55.7
Lj4g0020328 Lotus japonicus HOM05D006100 ORTHO05D007539 4.3e-06 55.1 117 41.0
Sc03g0002950 Simmondsia chinensis HOM05D006100 ORTHO05D007539 7.4e-06 54.3 64 51.6


User provided reference genes

Program Settings