Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30154 Brassica carinata HOM05D004847 ORTHO05D005856 1.8e-123 446.0 238 100.0
BraA05t23024Z Brassica rapa HOM05D004847 ORTHO05D005856 8.5e-110 400.6 254 88.2
A05p42290 Brassica napus HOM05D004847 ORTHO05D005856 2.5e-109 399.1 254 88.2
C05p61870 Brassica napus HOM05D004847 ORTHO05D005856 1.9e-106 389.4 254 87.0
BolC5t34847H Brassica oleracea HOM05D004847 ORTHO05D005856 1.9e-106 389.4 254 87.0
Sp3g04200 Schrenkiella parvula HOM05D004847 ORTHO05D005856 5.3e-104 381.3 257 84.4
AT3G05330 Arabidopsis thaliana HOM05D004847 ORTHO05D005856 1.9e-101 372.9 261 80.5
Thhalv10020613m.g Eutrema salsugineum HOM05D004847 ORTHO05D005856 2.1e-100 369.4 269 79.2
BNapus_Darmor_BZH_scaffold_114p00170 Brassica napus HOM05D004847 ORTHO05D005856 5.1e-99 364.8 267 79.8
BraSC132t45510Z Brassica rapa HOM05D004847 ORTHO05D005856 5.1e-99 364.8 267 79.8
BolC1t05700H Brassica oleracea HOM05D004847 ORTHO05D005856 2.8e-97 359.0 263 79.5
CARHR079680 Cardamine hirsuta HOM05D004847 ORTHO05D005856 2.7e-92 342.4 273 75.5
AL3G15780 Arabidopsis lyrata HOM05D004847 ORTHO05D005856 4.8e-89 331.6 254 75.2
Carub.0003s0461 Capsella rubella HOM05D004847 ORTHO05D005856 3.1e-88 328.9 269 72.1
BcaC05g30136 Brassica carinata HOM05D004847 ORTHO05D005856 1.0e-86 323.9 253 74.7
THA.LOC104818696 Tarenaya hassleriana HOM05D004847 ORTHO05D005856 1.0e-75 287.3 270 65.2
Aa31LG5G15720 Aethionema arabicum HOM05D000141 ORTHO05D001311 1.8e-72 276.6 233 67.8
COL.COLO4_13475 Corchorus olitorius HOM05D004847 ORTHO05D005856 1.3e-62 243.8 263 57.0
Thecc.05G303800 Theobroma cacao HOM05D004847 ORTHO05D005856 5.6e-61 238.4 264 57.2
QL03p006978 Quercus lobata HOM05D004847 ORTHO05D005856 7.3e-61 238.0 263 55.9
Gohir.D11G275000 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.6e-60 236.9 263 56.3
Gorai.007G296800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.6e-60 236.9 263 56.3
Gohir.A11G264800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.8e-60 236.1 263 56.3
TWI56G1294 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 2.8e-60 236.1 265 58.9
Potri.013G022600 Populus trichocarpa HOM05D004847 ORTHO05D005856 8.0e-60 234.6 264 57.6
Manes.09G166900 Manihot esculenta HOM05D004847 ORTHO05D005856 3.1e-59 232.6 259 57.1
CiPaw.08G164900 Carya illinoinensis HOM05D004847 ORTHO05D005856 5.8e-58 228.4 262 56.5
Gohir.D08G227600 Gossypium hirsutum HOM05D004847 ORTHO05D005856 1.3e-57 227.3 263 54.0
Gorai.004G241800 Gossypium raimondii HOM05D004847 ORTHO05D005856 1.3e-57 227.3 263 54.0
TAR362G0189 Trochodendron aralioides HOM05D004847 ORTHO05D005856 1.3e-57 227.3 262 55.0
GSVIVG01000048001 Vitis vinifera HOM05D004847 ORTHO05D005856 1.7e-57 226.9 264 53.8
Prupe.6G326100 Prunus persica HOM05D004847 ORTHO05D005856 2.9e-57 226.1 267 54.7
Nitab4.5_0000137g0030 Nicotiana tabacum HOM05D004847 ORTHO05D005856 4.9e-57 225.3 266 55.3
TWI12G0805 Tripterygium wilfordii HOM05D004847 ORTHO05D005856 1.1e-56 224.2 265 56.6
Eucgr.L01544 Eucalyptus grandis HOM05D004847 ORTHO05D005856 1.4e-56 223.8 260 53.1
Solyc01g099270.2 Solanum lycopersicum HOM05D004847 ORTHO05D005856 1.9e-56 223.4 260 54.6
Gohir.A08G210800 Gossypium hirsutum HOM05D004847 ORTHO05D005856 2.4e-56 223.0 263 53.2
Sopen01g042820 Solanum pennellii HOM05D004847 ORTHO05D005856 2.4e-56 223.0 258 54.7
Sabra05G0035400 Salix brachista HOM05D004847 ORTHO05D005856 4.1e-56 222.2 264 54.9
Aqoxy5G00505 Aquilegia oxysepala HOM05D004847 ORTHO05D005856 5.4e-56 221.9 262 52.7
Sc16g0008460 Simmondsia chinensis HOM05D004847 ORTHO05D005856 7.0e-56 221.5 273 48.4
CAN.G1034.25 Capsicum annuum HOM05D004847 ORTHO05D005856 9.2e-56 221.1 261 54.4
PGSC0003DMG401024742 Solanum tuberosum HOM05D004847 ORTHO05D005856 9.2e-56 221.1 263 53.6
Lalb_Chr04g0260731 Lupinus albus HOM05D004847 ORTHO05D005856 2.7e-55 219.5 262 53.4
Nitab4.5_0003156g0010 Nicotiana tabacum HOM05D004847 ORTHO05D005856 7.8e-55 218.0 263 55.1
TAR633G0229 Trochodendron aralioides HOM05D004847 ORTHO05D005856 7.8e-55 218.0 263 52.1
CANSAT54G0893 Cannabis sativa HOM05D004847 ORTHO05D005856 1.0e-54 217.6 268 55.2
Duzib128G0091 Durio zibethinus HOM05D004847 ORTHO05D005856 1.7e-54 216.9 258 51.9
Glyma.20G234200 Glycine max HOM05D004847 ORTHO05D005856 1.7e-54 216.9 259 52.1
Phvul.007G179800 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 1.7e-54 216.9 262 53.1
Duzib106G0633 Durio zibethinus HOM05D004847 ORTHO05D005856 3.0e-54 216.1 264 51.9
Dinv23942 Davidia involucrata HOM05D004847 ORTHO05D005856 3.9e-54 215.7 259 52.9
Glyma.10G154100 Glycine max HOM05D004847 ORTHO05D005856 3.9e-54 215.7 259 52.1
Peaxi162Scf00037g00632 Petunia axillaris HOM05D004847 ORTHO05D005856 5.0e-54 215.3 260 53.5
PSO832G1768 Papaver somniferum HOM05D004847 ORTHO05D005856 6.6e-54 214.9 268 53.7
Nn4g26247 Nelumbo nucifera HOM05D004847 ORTHO05D005856 8.6e-54 214.5 264 51.9
RcHm_v2.0_Chr3g0454731 Rosa chinensis HOM05D004847 ORTHO05D005856 1.5e-53 213.8 269 53.2
Potri.005G033200 Populus trichocarpa HOM05D004847 ORTHO05D005856 2.5e-53 213.0 262 54.6
PGR083G0144 Punica granatum HOM05D004847 ORTHO05D005856 2.5e-53 213.0 262 53.8
arahy.Tifrunner.gnm1.ann1.91A0PW Arachis hypogaea HOM05D004847 ORTHO05D005856 4.3e-53 212.2 263 52.1
MD12G1219500 Malus domestica HOM05D004847 ORTHO05D005856 5.6e-53 211.8 261 53.3
FvH4_6g05820 Fragaria vesca HOM05D004847 ORTHO05D005856 7.3e-53 211.5 269 52.4
FAN14G3900 Fragaria x ananassa HOM05D004847 ORTHO05D005856 7.3e-53 211.5 269 52.4
VMungo0720G3140 Vigna mungo HOM05D004847 ORTHO05D005856 7.3e-53 211.5 262 50.8
FAN05G5722 Fragaria x ananassa HOM05D004847 ORTHO05D005856 9.5e-53 211.1 269 52.4
Actinidia24643 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.2e-52 210.7 254 54.7
PSO210G5284 Papaver somniferum HOM05D004847 ORTHO05D005856 1.2e-52 210.7 263 54.0
Atru.chr2.410 Acer truncatum HOM05D004847 ORTHO05D005856 2.8e-52 209.5 263 52.1
FAN05G5436 Fragaria x ananassa HOM05D004847 ORTHO05D005856 2.8e-52 209.5 269 52.0
arahy.Tifrunner.gnm1.ann1.WTPV8B Arachis hypogaea HOM05D004847 ORTHO05D005856 1.1e-51 207.6 263 51.7
MELO3C004268.2 Cucumis melo HOM05D004847 ORTHO05D005856 1.4e-51 207.2 271 48.7
AUR62000830 Chenopodium quinoa HOM05D004847 ORTHO05D005856 3.1e-51 206.1 270 49.6
CsaV3_2G005250 Cucumis sativus L. HOM05D004847 ORTHO05D005856 4.0e-51 205.7 268 48.9
Hund07068 Selenicereus undatus HOM05D004847 ORTHO05D005856 4.0e-51 205.7 264 51.9
CSS0010861 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 6.8e-51 204.9 247 53.4
Lj5A533T17 Lonicera japonica HOM05D004847 ORTHO05D005856 1.2e-50 204.1 262 55.0
SalBow3G4161 Salvia bowleyana HOM05D004847 ORTHO05D005856 2.6e-50 203.0 263 49.8
Ca_10113_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 3.4e-50 202.6 268 50.4
CiPaw.07G017600 Carya illinoinensis HOM05D004847 ORTHO05D005856 4.4e-50 202.2 228 54.8
MBI19_g05601_MAGBIO Magnolia biondii HOM05D004847 ORTHO05D005856 5.8e-50 201.8 263 50.2
Psat0s3135g0240 Pisum sativum HOM05D004847 ORTHO05D005856 7.5e-50 201.4 245 51.4
TPR.G33190 Trifolium pratense HOM05D004847 ORTHO05D005856 1.3e-49 200.7 268 49.6
Ah.06g189340 Amaranthus hybridus HOM05D004847 ORTHO05D005856 1.7e-49 200.3 264 48.9
Cc11_g03560 Coffea canephora HOM05D004847 ORTHO05D005856 4.9e-49 198.7 257 49.8
Hma1.2p1_0928F.1_g237810 Hydrangea macrophylla HOM05D004847 ORTHO05D005856 1.9e-48 196.8 264 50.4
MSTRG.27999 Avicennia marina HOM05D004847 ORTHO05D005856 7.0e-48 194.9 260 49.6
Medtr7g113510 Medicago truncatula HOM05D004847 ORTHO05D005856 1.2e-47 194.1 262 48.5
Sabra13G0024700 Salix brachista HOM05D004847 ORTHO05D005856 2.7e-47 193.0 234 55.1
Sed0004129 Sechium edule HOM05D004847 ORTHO05D005856 6.0e-47 191.8 265 46.8
Lsat_1_v5_gn_9_123520 Lactuca sativa HOM05D004847 ORTHO05D005856 1.3e-46 190.7 258 50.8
Glyma.19G235300 Glycine max HOM05D004847 ORTHO05D005856 1.7e-46 190.3 258 48.1
MD04G1205400 Malus domestica HOM05D004847 ORTHO05D005856 1.7e-46 190.3 261 49.8
EL10Ac4g09352 Beta vulgaris HOM05D004847 ORTHO05D005856 5.1e-46 188.7 267 46.8
Migut.B01038 Erythranthe guttata HOM05D004847 ORTHO05D005856 5.1e-46 188.7 265 47.9
CSS0017838 Camellia sinensis var. sinensis HOM05D004847 ORTHO05D005856 8.6e-46 188.0 260 49.6
AUR62005144 Chenopodium quinoa HOM05D004847 ORTHO05D005856 8.6e-46 188.0 259 48.3
Ciclev10003680m.g Citrus clementina HOM05D004847 ORTHO05D001311 2.1e-44 183.3 267 50.2
vmacro19624 Vaccinium macrocarpon HOM05D004847 ORTHO05D005856 6.2e-44 181.8 266 49.2
DCAR_003332 Daucus carota HOM05D004847 ORTHO05D005856 1.4e-43 180.6 260 48.1
Haze_04198 Corylus avellana HOM05D004847 ORTHO05D005856 2.3e-43 179.9 264 47.0
Lj5g0019148 Lotus japonicus HOM05D004847 ORTHO05D005856 1.5e-42 177.2 264 47.7
ClCG02G015810 Citrullus lanatus HOM05D000141 ORTHO05D001311 3.4e-42 176.0 218 49.5
DCAR_029413 Daucus carota HOM05D004847 ORTHO05D005856 7.5e-42 174.9 264 44.7
Migut.O00711 Erythranthe guttata HOM05D004847 ORTHO05D005856 7.1e-40 168.3 269 44.2
Migut.N02003 Erythranthe guttata HOM05D004847 ORTHO05D005856 9.2e-40 167.9 272 44.9
TPR.G6113 Trifolium pratense HOM05D006420 ORTHO05D008009 2.1e-39 166.8 145 63.4
ECA240G3864 Erigeron canadensis HOM05D004847 ORTHO05D005856 3.5e-39 166.0 228 50.4
Lalb_Chr02g0148231 Lupinus albus HOM05D004847 ORTHO05D005856 4.6e-39 165.6 263 46.8
Phvul.006G091600 Phaseolus vulgaris HOM05D004847 ORTHO05D005856 4.3e-37 159.1 258 44.6
ATR0626G214 Amborella trichopoda HOM05D004847 ORTHO05D005856 1.6e-36 157.1 278 41.7
Zm00001eb286860 Zea mays HOM05D004847 ORTHO05D005856 6.2e-36 155.2 291 41.9
SGA_v2.0_scaffold81G26072 Striga asiatica HOM05D004847 ORTHO05D005856 1.4e-35 154.1 256 46.1
HanXRQChr09g0248411 Helianthus annuus HOM05D004847 ORTHO05D005856 1.8e-35 153.7 262 42.4
C05p10080 Brassica napus HOM05D004847 ORTHO05D005856 1.3e-33 147.5 105 83.8
CDE10G0375 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 2.2e-33 146.7 213 47.4
Medtr1g082940 Medicago truncatula HOM05D004847 ORTHO05D005856 6.4e-33 145.2 185 50.3
HPP92_003277 Vanilla planifolia HOM05D004847 ORTHO05D005856 2.4e-32 143.3 267 42.7
Glyma.03G237700 Glycine max HOM05D004847 ORTHO05D005856 4.2e-32 142.5 239 42.7
VMungo0540G0069 Vigna mungo HOM05D004847 ORTHO05D005856 2.1e-31 140.2 243 43.6
SGA_v2.0_scaffold80G25911 Striga asiatica HOM05D004847 ORTHO05D005856 3.9e-30 136.0 240 44.2
Rhsim05G0141800 Rhododendron simsii HOM05D004847 ORTHO05D005856 2.8e-28 129.8 266 40.6
CDE10G0745 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.8e-27 127.1 106 62.3
Oeu017487.1 Olea europaea HOM05D004847 ORTHO05D005856 3.1e-27 126.3 227 42.3
BolC1t05697H Brassica oleracea HOM05D004847 ORTHO05D005856 4.4e-26 122.5 85 84.7
Cpa.g.sc48.49 Carica papaya HOM05D004847 ORTHO05D005856 6.4e-25 118.6 79 78.5
Cpa.g.sc48.48 Carica papaya HOM05D004847 ORTHO05D005856 3.2e-24 116.3 164 49.4
Actinidia28666 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.6e-23 114.0 223 41.7
CDE10G0883 Ceratophyllum demersum HOM05D004847 ORTHO05D005856 1.5e-21 107.5 331 32.3
GSVIVG01000050001 Vitis vinifera HOM05D000141 ORTHO05D001311 2.5e-21 106.7 79 69.6
Gohir.D12G153350 Gossypium hirsutum HOM05D004847 ORTHO05D005856 8.1e-20 101.7 68 70.6
BcaC05g25071 Brassica carinata HOM05D004847 ORTHO05D005856 1.8e-19 100.5 69 85.5
Ca_09354_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 2.6e-18 96.7 59 76.3
Gorai.004G124500 Gossypium raimondii HOM05D004847 ORTHO05D005856 2.6e-18 96.7 67 64.2
SEGI_00809 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 2.6e-18 96.7 166 38.0
TPR.G11389 Trifolium pratense HOM05D004847 ORTHO05D005856 3.4e-18 96.3 168 45.2
MD00G1120700 Malus domestica HOM05D004847 ORTHO05D005856 5.8e-18 95.5 66 66.7
MD02G1275700 Malus domestica HOM05D004847 ORTHO05D005856 7.6e-18 95.1 66 65.2
Manes.08G120800 Manihot esculenta HOM05D004847 ORTHO05D005856 1.2e-15 87.8 249 36.9
Gohir.D08G115550 Gossypium hirsutum HOM05D004847 ORTHO05D005856 7.9e-15 85.1 58 67.2
Actinidia19789 Actinidia chinensis HOM05D004847 ORTHO05D005856 1.5e-13 80.9 87 54.0
Os02g0459300 Oryza sativa ssp. japonica HOM05D004847 ORTHO05D005856 3.3e-13 79.7 172 41.3
SEGI_03169 Sequoiadendron giganteum HOM05D004847 ORTHO05D005856 1.1e-11 74.7 147 35.4
Ca_09350_v3 Cicer arietinum L. HOM05D004847 ORTHO05D005856 4.0e-11 72.8 161 40.4
Psat0s212g0040 Pisum sativum HOM05D004847 ORTHO05D005856 4.0e-11 72.8 159 40.9
Psat3g073720 Pisum sativum HOM05D004847 ORTHO05D005856 7.6e-10 68.6 120 39.2
SHI18142 Sapria himalayana HOM05D000141 ORTHO05D001311 1.7e-09 67.4 259 33.6


User provided reference genes

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