Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 2.0e-144 515.8 264 100.0
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 1.1e-139 500.0 281 93.2
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 1.4e-137 493.0 281 91.8
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 2.7e-133 478.8 281 89.7
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 2.4e-129 465.7 281 86.8
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 6.1e-125 451.1 281 84.3
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 5.1e-124 448.0 281 84.0
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 1.2e-120 436.8 281 80.4
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 1.4e-118 429.9 281 79.7
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 9.4e-118 427.2 284 79.6
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 3.9e-116 421.8 281 78.6
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 2.8e-114 415.6 281 77.6
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 5.5e-102 374.8 281 70.5
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 1.1e-89 334.0 244 67.2
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 7.0e-89 331.3 246 65.9
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 9.1e-89 330.9 255 65.1
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 5.9e-88 328.2 282 59.6
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 1.9e-86 323.2 255 63.9
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.5e-86 322.8 273 60.8
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 2.5e-86 322.8 288 60.1
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 5.5e-86 321.6 257 64.2
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 7.2e-86 321.2 255 63.5
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 2.7e-85 319.3 252 63.5
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 6.1e-85 318.2 239 65.7
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 8.0e-85 317.8 283 59.7
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 1.4e-84 317.0 257 63.8
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 1.4e-84 317.0 284 60.2
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 4.0e-84 315.5 239 65.3
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 8.8e-84 314.3 295 56.9
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 1.2e-83 313.9 247 66.0
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 1.5e-83 313.5 284 59.5
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 2.0e-83 313.2 236 65.7
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 2.6e-83 312.8 247 64.4
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 4.4e-83 312.0 249 61.0
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 5.7e-83 311.6 283 57.2
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 5.7e-83 311.6 271 60.1
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 9.8e-83 310.8 274 58.0
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 9.8e-83 310.8 253 62.8
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 1.3e-82 310.5 260 62.3
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 2.8e-82 309.3 247 63.6
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 2.8e-82 309.3 247 64.4
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 6.3e-82 308.1 281 59.1
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 6.3e-82 308.1 246 64.6
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.1e-81 307.4 284 59.2
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 3.1e-81 305.8 255 61.2
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 3.1e-81 305.8 284 57.0
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 4.1e-81 305.4 284 58.8
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 5.4e-81 305.1 263 61.2
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 5.4e-81 305.1 255 62.0
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 9.2e-81 304.3 277 58.1
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.2e-80 303.9 290 57.6
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 1.2e-80 303.9 284 58.5
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 4.5e-80 302.0 276 56.5
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 5.9e-80 301.6 260 61.9
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 7.7e-80 301.2 247 61.1
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 1.3e-79 300.4 258 62.0
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 1.7e-79 300.1 283 54.8
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.3e-79 299.7 283 54.8
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 2.9e-79 299.3 249 60.6
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.8e-79 298.9 290 56.6
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 6.6e-79 298.1 261 59.4
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 8.6e-79 297.7 295 57.6
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 2.5e-78 296.2 280 56.1
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 3.3e-78 295.8 276 59.4
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.3e-78 295.8 249 61.4
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 1.2e-77 293.9 275 57.8
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 1.6e-77 293.5 295 56.6
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 2.1e-77 293.1 273 56.0
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 4.7e-77 292.0 267 57.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 2.6e-75 286.2 245 58.4
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 2.6e-75 286.2 269 57.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.2e-74 283.1 258 57.4
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 4.1e-73 278.9 258 56.6
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 7.0e-73 278.1 268 56.3
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 7.0e-73 278.1 258 58.1
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 2.0e-72 276.6 269 56.1
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 4.6e-72 275.4 266 56.8
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 7.8e-72 274.6 247 57.5
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 3.0e-71 272.7 237 61.6
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 5.0e-71 271.9 248 56.5
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.5e-70 270.4 226 61.1
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 5.6e-70 268.5 291 50.9
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 2.8e-69 266.2 259 52.1
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 1.0e-68 264.2 259 55.2
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 3.1e-68 262.7 254 55.9
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 6.8e-68 261.5 225 60.9
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 1.2e-67 260.8 247 55.5
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 3.4e-67 259.2 261 53.6
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 9.8e-67 257.7 245 55.5
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 9.8e-67 257.7 259 54.8
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 3.7e-66 255.8 259 52.5
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 8.3e-66 254.6 263 54.8
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 1.9e-65 253.4 216 61.6
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 6.8e-60 235.0 223 59.2
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.3e-58 230.7 241 52.7
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 5.1e-47 192.2 297 38.7
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 6.6e-47 191.8 261 42.9
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 8.6e-47 191.4 159 57.9
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 4.3e-46 189.1 239 45.2
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.6e-45 187.2 248 41.5
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 4.3e-38 162.5 140 67.9
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 9.6e-38 161.4 171 55.0
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 8.1e-37 158.3 141 56.7
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 3.1e-36 156.4 150 56.0
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 4.6e-32 142.5 104 63.5
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 3.0e-31 139.8 107 62.6
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 5.1e-31 139.0 268 33.6
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 9.6e-30 134.8 142 54.2
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.1e-28 129.8 255 34.5
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 3.8e-26 122.9 251 35.9
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 7.1e-25 118.6 241 33.6
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 2.9e-18 96.7 75 57.3
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 4.1e-12 76.3 91 50.5
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 1.0e-10 71.6 115 35.7
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.4e-09 67.8 117 33.3
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 3.2e-09 66.6 117 32.5
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 4.2e-09 66.2 115 33.0
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 4.2e-09 66.2 115 33.0
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 4.2e-09 66.2 103 33.0
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 7.2e-09 65.5 115 33.0
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 7.2e-09 65.5 115 33.0
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 1.2e-08 64.7 115 32.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 1.6e-08 64.3 115 32.2
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 2.1e-08 63.9 103 31.1
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 2.1e-08 63.9 115 31.3
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 4.6e-08 62.8 118 30.5
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 6.1e-08 62.4 103 31.1
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 6.1e-08 62.4 103 31.1
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 5.1e-07 59.3 228 22.8
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 1.9e-06 57.4 105 31.4


User provided reference genes

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