Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29650 Brassica carinata HOM05D000119 ORTHO05D031924 1.6e-135 486.1 244 100.0
C05p58740 Brassica napus HOM05D000119 ORTHO05D031924 5.2e-46 188.7 141 73.8
BolC5t34527H Brassica oleracea HOM05D000119 ORTHO05D031924 3.4e-37 159.5 141 63.8
BcaC01g04216 Brassica carinata HOM05D000119 ORTHO05D000054 2.3e-22 110.2 213 40.8
BolC3t16646H Brassica oleracea HOM05D000119 ORTHO05D000054 2.3e-22 110.2 213 40.8
C03p43780 Brassica napus HOM05D000119 ORTHO05D000054 3.1e-22 109.8 213 40.8
Thhalv10021963m.g Eutrema salsugineum HOM05D000119 ORTHO05D000054 2.0e-21 107.1 234 38.5
A03p36120 Brassica napus HOM05D000119 ORTHO05D000054 1.3e-20 104.4 220 39.5
BcaC09g48057 Brassica carinata HOM05D000119 ORTHO05D000054 2.2e-20 103.6 233 36.5
BolC1t05470H Brassica oleracea HOM05D000119 ORTHO05D000054 2.9e-20 103.2 233 36.5
AL3G20340 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 1.1e-19 101.3 229 36.7
BraA01t04311Z Brassica rapa HOM05D000119 ORTHO05D000054 1.1e-19 101.3 234 36.3
Sp3g07610 Schrenkiella parvula HOM05D000119 ORTHO05D000054 2.4e-19 100.1 224 38.8
BcaB04g18545 Brassica carinata HOM05D000119 ORTHO05D000054 1.2e-18 97.8 228 36.4
BcaC09g48012 Brassica carinata HOM05D000119 ORTHO05D000054 1.2e-18 97.8 237 35.9
BraA03t12783Z Brassica rapa HOM05D000119 ORTHO05D000054 1.6e-18 97.4 220 38.2
Carub.0003s0834 Capsella rubella HOM05D000119 ORTHO05D000054 3.0e-17 93.2 244 33.6
AT3G09230 Arabidopsis thaliana HOM05D000119 ORTHO05D000054 5.1e-17 92.4 233 35.6
CARHR083570 Cardamine hirsuta HOM05D000119 ORTHO05D000054 5.1e-17 92.4 235 34.5
Lsat_1_v5_gn_9_34380 Lactuca sativa HOM05D000119 ORTHO05D000054 3.6e-15 86.3 202 34.7
THA.LOC104823273 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 3.6e-15 86.3 214 35.0
Aa31LG3G1710 Aethionema arabicum HOM05D000119 ORTHO05D000054 4.7e-15 85.9 233 33.9
Lj2A84T89 Lonicera japonica HOM05D000119 ORTHO05D000054 1.4e-14 84.3 218 31.2
Thecc.05G025800 Theobroma cacao HOM05D000119 ORTHO05D000054 6.8e-14 82.0 231 31.6
RcHm_v2.0_Chr3g0464251 Rosa chinensis HOM05D000119 ORTHO05D000054 1.5e-13 80.9 228 29.8
Ciclev10012003m.g Citrus clementina HOM05D000119 ORTHO05D000054 2.0e-13 80.5 232 30.6
Duzib093G0864 Durio zibethinus HOM05D000119 ORTHO05D000054 2.0e-13 80.5 213 30.5
Ca_20658_v3 Cicer arietinum L. HOM05D000119 ORTHO05D000054 2.6e-13 80.1 230 29.1
FAN09G2350 Fragaria x ananassa HOM05D000119 ORTHO05D000054 4.4e-13 79.3 226 28.8
COL.COLO4_14656 Corchorus olitorius HOM05D000119 ORTHO05D000054 5.8e-13 79.0 229 29.7
FAN05G4167 Fragaria x ananassa HOM05D000119 ORTHO05D000054 7.5e-13 78.6 226 29.2
THA.LOC104827033 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 7.5e-13 78.6 230 31.7
FvH4_6g12440 Fragaria vesca HOM05D000119 ORTHO05D000054 9.9e-13 78.2 226 28.8
FAN14G3772 Fragaria x ananassa HOM05D000119 ORTHO05D000054 9.9e-13 78.2 226 28.8
Gohir.D09G158000 Gossypium hirsutum HOM05D000119 ORTHO05D000054 9.9e-13 78.2 228 30.3
HanXRQChr10g0293291 Helianthus annuus HOM05D000119 ORTHO05D000054 9.9e-13 78.2 192 33.3
Glyma.03G073774 Glycine max HOM05D000119 ORTHO05D000054 1.3e-12 77.8 229 29.3
Gorai.006G179700 Gossypium raimondii HOM05D000119 ORTHO05D000054 1.7e-12 77.4 229 31.0
Manes.08G083200 Manihot esculenta HOM05D000119 ORTHO05D000054 1.7e-12 77.4 228 32.0
Glyma.01G107500 Glycine max HOM05D000119 ORTHO05D000054 2.2e-12 77.0 229 30.6
Gohir.A09G162400 Gossypium hirsutum HOM05D000119 ORTHO05D000054 2.2e-12 77.0 229 31.0
Phvul.010G075500 Phaseolus vulgaris HOM05D000119 ORTHO05D000054 2.9e-12 76.6 232 29.7
VMungo0331G1269 Vigna mungo HOM05D000119 ORTHO05D000054 2.9e-12 76.6 230 30.0
CiPaw.09G203800 Carya illinoinensis HOM05D000119 ORTHO05D000054 4.9e-12 75.9 229 29.3
Duzib106G0207 Durio zibethinus HOM05D000119 ORTHO05D000054 6.4e-12 75.5 230 29.6
TAR369G0477 Trochodendron aralioides HOM05D000119 ORTHO05D000054 6.4e-12 75.5 231 28.1
Actinidia29153 Actinidia chinensis HOM05D000119 ORTHO05D000054 1.4e-11 74.3 229 32.3
FAN02G2143 Fragaria x ananassa HOM05D000119 ORTHO05D000054 1.9e-11 73.9 226 27.9
PGR031G2341 Punica granatum HOM05D000119 ORTHO05D000054 1.9e-11 73.9 228 30.7
QL02p028634 Quercus lobata HOM05D000119 ORTHO05D000054 1.9e-11 73.9 223 29.1
Sc07g0006930 Simmondsia chinensis HOM05D000119 ORTHO05D000054 2.4e-11 73.6 203 30.0
Hma1.2p1_1521F.1_g288730 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 3.2e-11 73.2 228 29.8
MD12G1156800 Malus domestica HOM05D000119 ORTHO05D000054 3.2e-11 73.2 229 28.8
TPR.G32526 Trifolium pratense HOM05D000080 ORTHO05D000053 3.2e-11 73.2 220 32.3
Actinidia13803 Actinidia chinensis HOM05D000119 ORTHO05D000054 4.1e-11 72.8 229 31.9
MD04G1142200 Malus domestica HOM05D000119 ORTHO05D000054 4.1e-11 72.8 229 27.1
Rhsim05G0201400 Rhododendron simsii HOM05D000119 ORTHO05D000054 7.1e-11 72.0 233 30.0
Eucgr.K03010 Eucalyptus grandis HOM05D000119 ORTHO05D000054 9.2e-11 71.6 231 29.9
QL07p027714 Quercus lobata HOM05D000119 ORTHO05D000054 9.2e-11 71.6 229 30.1
Cpa.g.sc56.79 Carica papaya HOM05D000119 ORTHO05D000054 1.2e-10 71.2 230 30.4
ECA247G1978 Erigeron canadensis HOM05D000119 ORTHO05D000054 1.2e-10 71.2 188 30.9
Medtr4g019370 Medicago truncatula HOM05D000119 ORTHO05D000054 1.2e-10 71.2 234 28.6
Prupe.6G267600 Prunus persica HOM05D000119 ORTHO05D000054 1.2e-10 71.2 234 29.5
Nn2g13559 Nelumbo nucifera HOM05D000119 ORTHO05D000054 1.6e-10 70.9 235 28.5
PSO339G6729 Papaver somniferum HOM05D000119 ORTHO05D000054 2.1e-10 70.5 230 27.0
SGA_v2.0_scaffold75G24986 Striga asiatica HOM05D000119 ORTHO05D000054 2.1e-10 70.5 219 32.4
TAR636G0956 Trochodendron aralioides HOM05D000119 ORTHO05D000054 2.1e-10 70.5 230 30.0
vmacro20209 Vaccinium macrocarpon HOM05D000119 ORTHO05D000054 2.1e-10 70.5 229 28.4
CAN.G498.1 Capsicum annuum HOM05D000185 ORTHO05D000054 2.7e-10 70.1 227 30.4
CDE09G0426 Ceratophyllum demersum HOM05D000119 ORTHO05D000054 2.7e-10 70.1 222 29.3
Haze_20914 Corylus avellana HOM05D000119 ORTHO05D000054 2.7e-10 70.1 229 28.4
Lalb_Chr13g0291321 Lupinus albus HOM05D000119 ORTHO05D000054 2.7e-10 70.1 231 28.1
PGSC0003DMG400020338 Solanum tuberosum HOM05D000119 ORTHO05D000054 2.7e-10 70.1 226 30.1
GSVIVG01034041001 Vitis vinifera HOM05D000119 ORTHO05D000054 2.7e-10 70.1 230 28.3
Lj3g0008585 Lotus japonicus HOM05D000119 ORTHO05D000054 3.5e-10 69.7 231 28.6
Nn2g11313 Nelumbo nucifera HOM05D000119 ORTHO05D000054 3.5e-10 69.7 235 28.1
Solyc09g011780.3 Solanum lycopersicum HOM05D000119 ORTHO05D000054 3.5e-10 69.7 225 30.2
Atru.chr8.2116 Acer truncatum HOM05D000119 ORTHO05D000054 4.6e-10 69.3 231 29.4
Cc06_g01890 Coffea canephora HOM05D000119 ORTHO05D000054 4.6e-10 69.3 231 28.1
Sopen09g006600 Solanum pennellii HOM05D000119 ORTHO05D000054 7.8e-10 68.6 225 29.8
PSO384G1381 Papaver somniferum HOM05D000119 ORTHO05D000054 1.0e-09 68.2 232 25.4
Psat7g241840 Pisum sativum HOM05D000119 ORTHO05D000054 1.0e-09 68.2 240 28.3
ECA247G0397 Erigeron canadensis HOM05D000119 ORTHO05D000054 1.3e-09 67.8 194 30.4
CDE02G2222 Ceratophyllum demersum HOM05D000119 ORTHO05D000054 1.7e-09 67.4 220 27.7
MD07G1211300 Malus domestica HOM05D000119 ORTHO05D000054 3.9e-09 66.2 225 28.9
Peaxi162Scf01302g00033 Petunia axillaris HOM05D000119 ORTHO05D000054 3.9e-09 66.2 225 29.3
Thecc.10G028800 Theobroma cacao HOM05D000119 ORTHO05D000054 5.1e-09 65.9 230 28.3
CANSAT35G1013 Cannabis sativa HOM05D000119 ORTHO05D000054 6.6e-09 65.5 229 28.8
CSS0048838 Camellia sinensis var. sinensis HOM05D000119 ORTHO05D000054 8.6e-09 65.1 230 27.8
Gohir.A10G228100 Gossypium hirsutum HOM05D000119 ORTHO05D000054 8.6e-09 65.1 253 26.9
MELO3C003212.2 Cucumis melo HOM05D000119 ORTHO05D000054 1.1e-08 64.7 235 28.5
Sc10g0002070 Simmondsia chinensis HOM05D000119 ORTHO05D000054 1.1e-08 64.7 234 29.1
TAR633G0698 Trochodendron aralioides HOM05D000119 ORTHO05D000054 1.1e-08 64.7 231 27.3
CsaV3_4G025860 Cucumis sativus L. HOM05D000119 ORTHO05D000054 1.5e-08 64.3 235 28.1
Sed0003318 Sechium edule HOM05D000119 ORTHO05D000054 1.5e-08 64.3 233 28.3
MSTRG.5610 Avicennia marina HOM05D000119 ORTHO05D000054 1.9e-08 63.9 226 29.6
ClCG04G007380 Citrullus lanatus HOM05D000119 ORTHO05D000054 1.9e-08 63.9 235 28.9
COL.COLO4_25600 Corchorus olitorius HOM05D000119 ORTHO05D000054 1.9e-08 63.9 232 27.2
DCAR_028794 Daucus carota HOM05D000119 ORTHO05D000054 1.9e-08 63.9 228 26.8
Migut.J00247 Erythranthe guttata HOM05D000119 ORTHO05D000054 1.9e-08 63.9 231 29.4
Aqoxy128s007 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 2.5e-08 63.5 232 28.4
Aqoxy1G00771 Aquilegia oxysepala HOM05D000119 ORTHO05D000054 2.5e-08 63.5 232 28.4
FvH4_7g23750 Fragaria vesca HOM05D000119 ORTHO05D000054 3.3e-08 63.2 226 26.5
FAN06G3585 Fragaria x ananassa HOM05D000119 ORTHO05D000054 3.3e-08 63.2 226 26.5
Hma1.2p1_0710F.1_g207490 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 3.3e-08 63.2 232 26.3
Lj1A948G47 Lonicera japonica HOM05D000119 ORTHO05D000054 3.3e-08 63.2 216 29.2
TWI74G0808 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 3.3e-08 63.2 229 25.8
Aa31LG10G10720 Aethionema arabicum HOM05D000119 ORTHO05D000054 4.3e-08 62.8 221 26.2
MSTRG.19044 Avicennia marina HOM05D000119 ORTHO05D000054 4.3e-08 62.8 231 27.3
MBI14_g28026_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 4.3e-08 62.8 231 26.8
Nitab4.5_0000008g0380 Nicotiana tabacum HOM05D000119 ORTHO05D000054 4.3e-08 62.8 224 28.1
FAN06G0822 Fragaria x ananassa HOM05D000119 ORTHO05D000054 7.3e-08 62.0 226 26.1
FAN10G3963 Fragaria x ananassa HOM05D000119 ORTHO05D000054 7.3e-08 62.0 226 25.7
Nitab4.5_0002152g0050 Nicotiana tabacum HOM05D000119 ORTHO05D000054 7.3e-08 62.0 227 27.8
PGR142G4055 Punica granatum HOM05D000119 ORTHO05D000054 7.3e-08 62.0 221 24.4
TWI73G1201 Tripterygium wilfordii HOM05D000119 ORTHO05D000054 9.5e-08 61.6 208 26.9
Hma1.2p1_0026F.1_g016800 Hydrangea macrophylla HOM05D000119 ORTHO05D000054 1.2e-07 61.2 184 27.7
Lalb_Chr17g0346561 Lupinus albus HOM05D000119 ORTHO05D000054 1.2e-07 61.2 220 25.9
Rhsim03G0138700 Rhododendron simsii HOM05D000119 ORTHO05D000054 1.6e-07 60.8 229 25.8
DCAR_024045 Daucus carota HOM05D000119 ORTHO05D000054 2.1e-07 60.5 228 25.4
LjContig00141g0019086 Lotus japonicus HOM05D000119 ORTHO05D000054 2.1e-07 60.5 230 25.2
FAN01G1184 Fragaria x ananassa HOM05D000119 ORTHO05D000054 3.6e-07 59.7 226 25.7
FAN03G0580 Fragaria x ananassa HOM05D000119 ORTHO05D000054 3.6e-07 59.7 226 25.2
Sp5g06740 Schrenkiella parvula HOM05D000119 ORTHO05D000054 3.6e-07 59.7 231 24.2
vmacro10078 Vaccinium macrocarpon HOM05D000119 ORTHO05D000054 3.6e-07 59.7 210 31.9
CANSAT56G0223 Cannabis sativa HOM05D000119 ORTHO05D000054 4.7e-07 59.3 237 24.9
Cpa.g.sc19.238 Carica papaya HOM05D000119 ORTHO05D000054 4.7e-07 59.3 233 25.3
THA.LOC104810059 Tarenaya hassleriana HOM05D000119 ORTHO05D000054 4.7e-07 59.3 207 27.1
Glyma.14G063400 Glycine max HOM05D000119 ORTHO05D000054 6.2e-07 58.9 225 26.2
Hund16012 Selenicereus undatus HOM05D000119 ORTHO05D000054 6.2e-07 58.9 256 25.0
GSVIVG01016393001 Vitis vinifera HOM05D000119 ORTHO05D000054 6.2e-07 58.9 223 28.3
Cc02_g07090 Coffea canephora HOM05D000119 ORTHO05D000054 8.1e-07 58.5 241 26.1
unitig_22.g6586 Utricularia gibba HOM05D000119 ORTHO05D000054 8.1e-07 58.5 221 26.7
CANSAT56G4092 Cannabis sativa HOM05D000119 ORTHO05D000054 1.1e-06 58.2 237 24.5
CARHR165830 Cardamine hirsuta HOM05D000119 ORTHO05D000054 1.4e-06 57.8 224 25.9
MD01G1144700 Malus domestica HOM05D000119 ORTHO05D000054 1.4e-06 57.8 243 26.7
Rhsim09G0170900 Rhododendron simsii HOM05D000119 ORTHO05D000054 1.4e-06 57.8 215 28.8
BcaC02g12121 Brassica carinata HOM05D000119 ORTHO05D000054 1.8e-06 57.4 205 25.4
BolC4t22379H Brassica oleracea HOM05D000119 ORTHO05D000054 1.8e-06 57.4 205 25.4
SGA_v2.0_scaffold343G49458 Striga asiatica HOM05D000119 ORTHO05D000054 1.8e-06 57.4 201 30.8
AL5G36990 Arabidopsis lyrata HOM05D000119 ORTHO05D000054 2.4e-06 57.0 233 24.0
EL10Ac2g04760 Beta vulgaris HOM05D000119 ORTHO05D000054 2.4e-06 57.0 250 26.0
Actinidia33952 Actinidia chinensis HOM05D000119 ORTHO05D000054 3.1e-06 56.6 190 27.4
Lsat_1_v5_gn_2_120221 Lactuca sativa HOM05D000119 ORTHO05D000054 3.1e-06 56.6 211 28.0
Gorai.011G278500 Gossypium raimondii HOM05D000119 ORTHO05D000054 6.8e-06 55.5 230 26.5
BraA05t19622Z Brassica rapa HOM05D000119 ORTHO05D000054 8.9e-06 55.1 200 25.0
HanXRQChr14g0458891 Helianthus annuus HOM05D000119 ORTHO05D000054 8.9e-06 55.1 202 27.2
MBI05_g10288_MAGBIO Magnolia biondii HOM05D000119 ORTHO05D000054 8.9e-06 55.1 232 27.2


User provided reference genes

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