Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.0e-162 576.6 287 100.0
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 2.6e-158 562.0 298 95.3
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 2.6e-158 562.0 298 95.3
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 3.0e-146 521.9 298 88.6
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 7.5e-145 517.3 301 88.0
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 1.2e-134 483.4 291 84.2
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.3e-132 475.3 301 80.7
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 3.9e-125 451.8 301 76.7
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 8.0e-123 444.1 301 76.1
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 1.2e-121 440.3 299 76.9
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 4.6e-118 428.3 276 78.3
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 4.9e-112 408.3 295 74.2
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.6e-105 386.0 257 74.3
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 2.7e-102 375.9 257 72.4
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 2.2e-96 356.3 282 63.1
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.4e-90 336.3 226 76.1
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 2.6e-89 332.8 296 58.1
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 2.4e-87 326.2 287 64.5
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 9.3e-87 324.3 294 56.8
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 2.1e-86 323.2 294 56.5
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 6.0e-86 321.6 285 63.9
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 1.0e-85 320.9 294 56.1
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 1.1e-84 317.4 295 56.6
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 1.9e-84 316.6 295 56.3
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 3.3e-84 315.8 294 56.5
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 7.4e-84 314.7 327 51.1
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 9.6e-84 314.3 293 54.6
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.6e-83 313.5 290 55.5
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 3.7e-83 312.4 283 55.8
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 4.8e-83 312.0 285 56.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 6.2e-83 311.6 291 56.0
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.4e-82 309.7 285 57.2
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 3.1e-82 309.3 302 54.3
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 5.3e-82 308.5 284 54.9
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 4.5e-81 305.4 263 55.9
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 4.5e-81 305.4 263 55.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 4.5e-81 305.4 292 55.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 7.6e-81 304.7 293 54.3
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 7.6e-81 304.7 309 53.4
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 4.9e-80 302.0 286 60.8
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.4e-80 301.6 199 74.9
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 1.4e-79 300.4 293 54.3
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 1.9e-79 300.1 294 53.1
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 2.5e-79 299.7 285 53.3
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 2.5e-79 299.7 288 51.7
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.2e-79 298.9 283 58.3
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 3.5e-78 295.8 294 53.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 6.0e-78 295.0 293 52.9
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 1.0e-77 294.3 291 52.9
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.3e-77 293.9 296 51.7
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 2.3e-77 293.1 266 55.6
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 3.9e-77 292.4 264 54.9
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 5.1e-77 292.0 264 56.1
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 6.7e-77 291.6 294 52.7
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.1e-76 290.8 286 56.3
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 3.3e-76 289.3 296 52.7
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 4.3e-76 288.9 296 52.7
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 5.6e-76 288.5 260 56.9
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 5.6e-76 288.5 286 52.4
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 1.3e-75 287.3 285 53.0
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.3e-75 287.3 285 54.4
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 2.1e-75 286.6 274 54.7
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 4.8e-75 285.4 293 50.9
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 6.2e-75 285.0 314 50.0
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 8.2e-75 284.6 280 52.9
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.4e-74 283.1 294 51.7
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.4e-74 283.1 294 51.7
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 2.4e-74 283.1 303 49.8
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 9.0e-74 281.2 288 51.0
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 9.0e-74 281.2 289 50.9
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.6e-73 279.6 278 55.4
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 2.6e-73 279.6 278 55.4
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 3.4e-73 279.3 298 51.3
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 4.5e-73 278.9 258 55.8
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 5.8e-73 278.5 280 54.3
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 7.6e-73 278.1 281 55.5
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 7.6e-73 278.1 263 53.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 7.6e-73 278.1 303 48.8
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.3e-72 277.3 280 54.3
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 1.3e-72 277.3 299 51.5
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.2e-72 276.6 283 51.6
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 3.8e-72 275.8 274 58.0
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 3.8e-72 275.8 300 52.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.4e-71 273.9 240 57.1
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.4e-71 273.9 308 49.4
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 1.6e-70 270.4 288 49.0
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 3.5e-70 269.2 296 51.7
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 4.6e-70 268.9 277 51.6
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 7.9e-70 268.1 239 56.9
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 1.8e-69 266.9 264 52.3
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.0e-69 266.2 264 53.0
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 5.7e-68 261.9 351 44.7
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 7.4e-68 261.5 260 51.5
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 2.8e-67 259.6 278 48.6
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 1.1e-66 257.7 293 49.8
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 2.6e-65 253.1 284 53.2
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.4e-65 252.7 213 62.0
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.9e-64 249.6 184 71.2
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 8.5e-64 248.1 258 49.6
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 1.9e-63 246.9 214 57.0
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 4.2e-63 245.7 282 47.9
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 1.2e-62 244.2 211 56.4
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.0e-61 241.1 259 48.6
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 3.9e-61 239.2 289 45.0
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 6.7e-61 238.4 213 54.5
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.5e-60 237.3 292 46.9
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.5e-60 236.5 258 50.0
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 3.1e-58 229.6 219 52.5
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 5.3e-58 228.8 303 45.2
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 2.0e-57 226.9 289 46.4
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 4.5e-57 225.7 270 45.2
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 8.5e-56 221.5 285 44.6
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.5e-55 218.8 217 53.5
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 2.8e-51 206.5 224 50.9
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 4.8e-51 205.7 245 50.6
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 1.8e-50 203.8 285 42.1
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.8e-48 196.1 286 43.0
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 3.9e-45 186.0 164 56.1
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 1.1e-44 184.5 271 39.9
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 2.2e-43 180.3 204 46.6
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 9.1e-42 174.9 259 38.6
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 2.6e-41 173.3 286 37.8
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 1.5e-39 167.5 164 52.4
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 4.2e-39 166.0 166 48.2
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 1.6e-38 164.1 285 36.8
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 1.8e-37 160.6 265 38.5
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 4.4e-36 156.0 99 76.8
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 2.0e-33 147.1 102 68.6
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.7e-33 146.7 161 49.1
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-32 144.1 136 54.4
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 2.9e-32 143.3 210 44.8
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 8.8e-29 131.7 131 54.2
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 1.3e-27 127.9 107 62.6
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 6.3e-27 125.6 107 62.6
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 1.6e-25 120.9 113 59.3
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 5.9e-25 119.0 118 50.8
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 4.2e-23 112.8 58 87.9
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 4.2e-23 112.8 58 87.9
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.5e-20 104.4 237 33.8
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 2.8e-19 100.1 109 46.8
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 1.2e-12 78.2 106 42.5
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 7.5e-12 75.5 294 26.2
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.7e-11 73.2 76 51.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 3.9e-08 63.2 247 24.7
VMungo0720G2068 Vigna mungo HOM05D007318 ORTHO05D009289 6.6e-08 62.4 217 25.3
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 1.1e-07 61.6 81 46.9
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 4.3e-07 59.7 151 30.5
Phvul.007G242433 Phaseolus vulgaris HOM05D007318 ORTHO05D009289 5.6e-07 59.3 234 24.8
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 7.3e-07 58.9 168 27.4
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.6e-06 57.8 48 62.5
Sed0005914 Sechium edule HOM05D007318 ORTHO05D009289 1.6e-06 57.8 199 26.1
SMO172G0015 Selaginella moellendorffii HOM05D007318 ORTHO05D009289 1.6e-06 57.8 141 28.4
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 2.1e-06 57.4 227 26.0
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 2.1e-06 57.4 227 26.0
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 2.1e-06 57.4 250 24.0
Os11g0136500 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 2.8e-06 57.0 213 24.4
QL04p044887 Quercus lobata HOM05D007318 ORTHO05D009289 6.2e-06 55.8 173 26.6
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 8.0e-06 55.5 200 27.0
Os12g0133400 Oryza sativa ssp. japonica HOM05D007318 ORTHO05D009289 8.0e-06 55.5 213 24.4


User provided reference genes

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