Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 6.7e-90 334.0 164 100.0
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-26 123.6 90 74.4
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 4.0e-26 122.1 90 72.2
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.2e-25 120.6 90 72.2
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.2e-25 120.6 90 72.2
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 2.6e-25 119.4 90 71.1
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 3.4e-25 119.0 90 72.2
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 6.4e-24 114.8 90 67.8
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 6.4e-24 114.8 90 67.8
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 6.4e-24 114.8 90 67.8
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 6.4e-24 114.8 90 67.8
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 2.4e-23 112.8 90 66.7
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 2.4e-23 112.8 90 66.7
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 2.4e-23 112.8 90 67.8
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 5.4e-23 111.7 100 62.0
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 4.6e-22 108.6 90 65.6
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 7.8e-22 107.8 100 60.0
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.8e-22 107.8 100 60.0
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 2.3e-21 106.3 100 60.0
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 8.6e-21 104.4 90 64.4
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 3.6e-19 99.0 91 60.4
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 6.2e-19 98.2 91 59.3
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 6.2e-19 98.2 91 60.4
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 8.1e-19 97.8 91 60.4
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 1.4e-18 97.1 100 55.0
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.9e-16 89.4 90 53.3
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.1e-14 83.2 86 52.3
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 1.3e-13 80.5 88 48.9
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.3e-13 80.5 99 44.4
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 2.3e-13 79.7 87 49.4
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 6.6e-13 78.2 91 47.3
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.5e-12 76.3 87 47.1
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 2.5e-12 76.3 87 49.4
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.3e-12 75.9 87 47.1
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 3.3e-12 75.9 87 48.3
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 5.6e-12 75.1 89 47.2
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 7.3e-12 74.7 87 49.4
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 9.6e-12 74.3 85 47.1
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.2e-11 73.9 86 46.5
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.6e-11 73.6 92 47.8
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 2.1e-11 73.2 85 47.1
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 2.1e-11 73.2 87 44.8
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 3.6e-11 72.4 87 44.8
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 3.6e-11 72.4 87 47.1
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.2e-11 71.6 91 46.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 6.2e-11 71.6 87 44.8
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 8.1e-11 71.2 98 41.8
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.1e-10 70.9 87 44.8
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.1e-10 70.9 88 43.2
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.1e-10 70.9 95 41.1
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 1.4e-10 70.5 93 45.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 2.4e-10 69.7 87 46.0
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 3.1e-10 69.3 95 38.9
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 5.2e-10 68.6 96 41.7
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 6.9e-10 68.2 87 42.5
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 6.9e-10 68.2 87 42.5
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.2e-09 67.4 87 41.4
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 1.5e-09 67.0 94 40.4
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 2.0e-09 66.6 99 39.4
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 2.0e-09 66.6 97 39.2
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.6e-09 66.2 87 41.4
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 3.4e-09 65.9 96 40.6
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 4.4e-09 65.5 95 38.9
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 4.4e-09 65.5 95 38.9
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 4.4e-09 65.5 87 39.1
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 4.4e-09 65.5 91 41.8
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 5.8e-09 65.1 91 41.8
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 5.8e-09 65.1 91 41.8
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 7.6e-09 64.7 91 40.7
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 7.6e-09 64.7 94 40.4
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 7.6e-09 64.7 94 40.4
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 7.6e-09 64.7 94 40.4
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 9.9e-09 64.3 91 40.7
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 9.9e-09 64.3 91 40.7
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 9.9e-09 64.3 91 40.7
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 9.9e-09 64.3 91 40.7
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 1.3e-08 63.9 87 39.1
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-08 63.2 85 42.4
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.2e-08 63.2 85 43.5
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 2.9e-08 62.8 91 40.7
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 2.9e-08 62.8 98 38.8
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 2.9e-08 62.8 96 39.6
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 3.8e-08 62.4 91 38.5
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 4.9e-08 62.0 89 40.4
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 6.4e-08 61.6 96 38.5
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 1.1e-07 60.8 91 40.7
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 1.4e-07 60.5 89 38.2
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 1.9e-07 60.1 92 39.1
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.2e-07 59.3 36 75.0
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 4.2e-07 58.9 99 35.4
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 4.2e-07 58.9 36 72.2
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 4.2e-07 58.9 82 40.2
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 4.2e-07 58.9 96 37.5
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 7.1e-07 58.2 91 39.6
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 9.3e-07 57.8 91 39.6
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.2e-06 57.4 37 70.3
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 2.7e-06 56.2 101 37.6
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 3.5e-06 55.8 91 36.3
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 3.5e-06 55.8 104 33.7
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 7.8e-06 54.7 101 36.6
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 7.8e-06 54.7 91 37.4


User provided reference genes

Program Settings