Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g23210 Brassica carinata HOM05D006121 ORTHO05D009559 1.5e-272 942.2 472 100.0
BcaC03g15130 Brassica carinata HOM05D006121 ORTHO05D009559 5.6e-182 641.3 500 69.6
BcaC04g20762 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-177 625.2 494 69.4
BcaC07g37897 Brassica carinata HOM05D006121 ORTHO05D009559 6.3e-173 611.3 474 69.8
BcaC01g05819 Brassica carinata HOM05D006121 ORTHO05D009559 2.7e-168 595.9 513 64.7
BcaC03g16227 Brassica carinata HOM05D006121 ORTHO05D009559 6.9e-164 581.3 505 64.0
BcaC06g36507 Brassica carinata HOM05D006121 ORTHO05D009559 1.2e-163 580.5 525 61.7
BcaC07g37903 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-163 579.3 522 62.5
BcaC01g02238 Brassica carinata HOM05D006121 ORTHO05D009559 4.2e-153 545.4 526 58.6
BcaC05g27433 Brassica carinata HOM05D006121 ORTHO05D009559 5.2e-143 511.9 504 58.7
BcaC03g17371 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-134 482.6 505 56.6
BcaC04g23066 Brassica carinata HOM05D006121 ORTHO05D009559 5.0e-122 442.2 451 58.1
BraA09t38607Z Brassica rapa HOM05D006121 ORTHO05D009559 2.1e-120 436.8 418 62.2
BcaC03g16371 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-114 417.2 417 58.5
BcaC04g20594 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-74 283.5 378 46.8
BcaC06g35988 Brassica carinata HOM05D006121 ORTHO05D009559 6.0e-67 259.2 368 47.6
BcaC09g51377 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-64 251.1 409 43.5
BolC7t41498H Brassica oleracea HOM05D006121 ORTHO05D009559 3.7e-64 250.0 167 74.9
BraA06t25079Z Brassica rapa HOM05D006121 ORTHO05D009559 9.7e-57 225.3 161 70.2
BcaC08g42951 Brassica carinata HOM05D006121 ORTHO05D009559 8.2e-56 222.2 215 47.9
BcaC02g11248 Brassica carinata HOM05D006121 ORTHO05D009559 8.5e-53 212.2 528 31.2
BcaC01g06835 Brassica carinata HOM05D006121 ORTHO05D009559 3.2e-52 210.3 521 30.1
BcaC07g37147 Brassica carinata HOM05D006121 ORTHO05D009559 1.0e-50 205.3 222 44.6
BcaC02g11960 Brassica carinata HOM05D006121 ORTHO05D009559 6.7e-50 202.6 525 31.0
BcaC05g27793 Brassica carinata HOM05D006121 ORTHO05D009559 8.8e-50 202.2 226 44.2
BcaC05g27675 Brassica carinata HOM05D006121 ORTHO05D009559 7.4e-49 199.1 214 43.9
BcaC01g02132 Brassica carinata HOM05D006121 ORTHO05D009559 9.7e-49 198.7 235 42.1
BcaC09g49299 Brassica carinata HOM05D006121 ORTHO05D009559 3.7e-48 196.8 516 29.3
BolC9t56759H Brassica oleracea HOM05D006121 ORTHO05D009559 9.1e-47 192.2 145 69.0
BcaC09g49745 Brassica carinata HOM05D006121 ORTHO05D009559 4.5e-46 189.9 200 46.5
BcaC09g49541 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-43 181.4 189 58.2
BcaC09g49729 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-43 181.4 189 47.6
BcaC03g16521 Brassica carinata HOM05D006121 ORTHO05D009559 7.9e-43 179.1 190 45.8
Carub.0003s2904 Capsella rubella HOM05D006121 ORTHO05D009559 3.9e-42 176.8 221 41.6
BcaC04g21502 Brassica carinata HOM05D006121 ORTHO05D009559 2.8e-40 170.6 195 44.1
BcaC08g43580 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-37 161.4 432 31.2
BcaC06g36167 Brassica carinata HOM05D006121 ORTHO05D009559 2.6e-33 147.5 414 30.7
BolC9t58013H Brassica oleracea HOM05D006121 ORTHO05D009559 4.4e-33 146.7 182 46.7
BcaC09g49792 Brassica carinata HOM05D006121 ORTHO05D009559 9.1e-31 139.0 119 67.2
BcaC02g09767 Brassica carinata HOM05D006121 ORTHO05D009559 5.9e-30 136.3 156 42.3
BcaC05g28468 Brassica carinata HOM05D006121 ORTHO05D009559 1.7e-29 134.8 165 40.0
BcaC03g16486 Brassica carinata HOM05D006121 ORTHO05D009559 2.2e-29 134.4 167 40.1
BolC4t24012H Brassica oleracea HOM05D006121 ORTHO05D009559 4.2e-28 130.2 72 81.9
BolC3t20163H Brassica oleracea HOM05D006121 ORTHO05D009559 4.7e-27 126.7 390 28.7
BcaC04g20036 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-26 124.8 120 60.8
BcaC05g28043 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-26 124.8 109 50.5
BcaB05g23675 Brassica carinata HOM05D006121 ORTHO05D016754 2.3e-26 124.4 164 48.2
BcaC08g45230 Brassica carinata HOM05D006121 ORTHO05D002427 6.8e-26 122.9 302 31.8
AL3G38160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.2e-25 122.1 216 32.4
AL8G11870 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.6e-25 120.9 216 32.4
AL1G57330 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.4e-25 120.6 216 32.9
AL6G42690 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.4e-25 120.2 213 35.7
AL8G20450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 4.4e-25 120.2 218 34.4
AL2G18400 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.7e-25 119.8 218 33.5
AL4G14310 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.7e-25 119.8 265 30.9
AL6G47370 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.3e-24 118.6 218 34.4
AL1G47450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.7e-24 118.2 217 34.6
AL4G24140 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-24 117.9 213 35.2
AL8G45410 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.2e-24 117.9 213 34.7
AL1G61970 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.7e-24 117.1 213 35.2
AL1G65160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 6.3e-24 116.3 213 34.3
AL9U10230 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 1.1e-23 115.5 213 34.3
BcaC03g16573 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-23 114.8 180 45.0
AL2G23360 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.4e-23 114.4 213 34.7
Carub.0007s3611 Capsella rubella HOM05D009492 ORTHO05D011693 2.4e-23 114.4 246 29.3
AL5G12240 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.3e-23 113.2 213 34.3
AL8G33480 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.0e-22 111.3 237 28.7
AT5G32590 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 2.2e-21 107.8 217 29.5
Carub.0007s3731 Capsella rubella HOM05D009492 ORTHO05D011693 2.2e-21 107.8 246 27.6
CARHR115630 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.9e-21 107.5 218 33.0
AL5G23160 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 3.8e-21 107.1 173 37.6
AL3G37710 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 5.0e-21 106.7 173 37.6
BcaC08g42838 Brassica carinata HOM05D006121 ORTHO05D009559 5.0e-21 106.7 91 48.4
BcaC05g27828 Brassica carinata HOM05D006121 ORTHO05D009559 8.5e-21 105.9 77 67.5
C05p29190 Brassica napus HOM05D006121 ORTHO05D009559 1.9e-20 104.8 250 29.2
AL1G50390 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 5.5e-20 103.2 234 27.4
AL4G17450 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 9.4e-20 102.4 260 34.2
AL6G45550 Arabidopsis lyrata HOM05D008458 ORTHO05D010628 2.7e-19 100.9 166 35.5
AT4G03830 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 3.6e-19 100.5 188 28.2
AL2G23320 Arabidopsis lyrata HOM05D009492 ORTHO05D011693 4.7e-19 100.1 292 24.0
Carub.0006s2644 Capsella rubella HOM05D009492 ORTHO05D011693 4.7e-19 100.1 248 28.2
BcaC01g00176 Brassica carinata HOM05D006121 ORTHO05D009559 6.1e-19 99.8 105 44.8
BcaC03g15823 Brassica carinata HOM05D006121 ORTHO05D009559 6.1e-19 99.8 112 40.2
BcaC04g20823 Brassica carinata HOM05D006121 ORTHO05D009559 6.1e-19 99.8 135 38.5
Carub.0002s0916 Capsella rubella HOM05D009492 ORTHO05D011693 8.0e-19 99.4 203 29.6
BcaC09g50206 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-18 98.2 112 41.1
BcaC06g35841 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-18 97.4 93 50.5
BcaB04g17962 Brassica carinata HOM05D006121 ORTHO05D009559 6.8e-18 96.3 89 53.9
Carub.0005s0956 Capsella rubella HOM05D009492 ORTHO05D011693 8.8e-18 95.9 174 32.2
Carub.0008s0728 Capsella rubella HOM05D009492 ORTHO05D011693 1.2e-17 95.5 248 25.8
BcaC07g37265 Brassica carinata HOM05D006121 ORTHO05D009559 4.4e-17 93.6 97 47.4
Carub.0002s0942 Capsella rubella HOM05D009492 ORTHO05D011693 5.7e-17 93.2 165 31.5
AT1G51172 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 9.8e-17 92.4 239 25.5
Carub.0004s0672 Capsella rubella HOM05D009492 ORTHO05D011693 1.3e-16 92.0 246 25.2
Carub.0002s1048 Capsella rubella HOM05D009492 ORTHO05D011693 2.8e-16 90.9 248 26.2
Carub.0002s0975 Capsella rubella HOM05D009492 ORTHO05D011693 3.7e-16 90.5 141 34.8
BcaC06g33795 Brassica carinata HOM05D003421 ORTHO05D003268 1.1e-15 89.0 241 33.6
Carub.0007s3212 Capsella rubella HOM05D009492 ORTHO05D011693 1.1e-15 89.0 226 25.7
BcaC06g35787 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-15 88.2 77 63.6
BcaC03g15126 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-15 87.8 133 34.6
Carub.0001s3399 Capsella rubella HOM05D008386 ORTHO05D010572 1.2e-14 85.5 216 27.8
Carub.0003s2742 Capsella rubella HOM05D009492 ORTHO05D011693 1.0e-13 82.4 161 29.2
Carub.0007s2123 Capsella rubella HOM05D010629 ORTHO05D005680 1.0e-13 82.4 194 32.5
BolC5t32557H Brassica oleracea HOM05D006121 ORTHO05D009559 1.3e-13 82.0 97 45.4
Carub.0002s1244 Capsella rubella HOM05D010629 ORTHO05D005680 2.9e-13 80.9 194 32.0
Carub.0006s0276 Capsella rubella HOM05D010629 ORTHO05D005680 2.9e-13 80.9 194 32.0
CARHR184520 Cardamine hirsuta HOM05D008458 ORTHO05D010628 2.9e-13 80.9 164 30.5
Sp4g11160 Schrenkiella parvula HOM05D010772 ORTHO05D005680 7.2e-12 76.3 200 26.5
CARHR035710 Cardamine hirsuta HOM05D008458 ORTHO05D010628 1.6e-11 75.1 162 30.9
Carub.0353s0001 Capsella rubella HOM05D010629 ORTHO05D005680 2.1e-11 74.7 185 27.6
BcaB02g06461 Brassica carinata HOM05D006121 ORTHO05D009559 2.8e-11 74.3 153 37.9
Carub.0005s0210 Capsella rubella HOM05D010629 ORTHO05D005680 3.6e-11 73.9 190 27.9
BolC7t41205H Brassica oleracea HOM05D006121 ORTHO05D013509 4.7e-11 73.6 409 24.0
Carub.0001s3424 Capsella rubella HOM05D009492 ORTHO05D011693 4.7e-11 73.6 224 24.1
AT2G11010 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 8.0e-11 72.8 216 25.9
BcaC01g02131 Brassica carinata HOM05D006121 ORTHO05D013509 1.0e-10 72.4 208 31.7
BcaC06g35840 Brassica carinata HOM05D006121 ORTHO05D013509 2.3e-10 71.2 209 31.6
BcaNung03347 Brassica carinata HOM05D006121 ORTHO05D009559 2.3e-10 71.2 63 63.5
BcaC04g22047 Brassica carinata HOM05D006121 ORTHO05D009559 3.0e-10 70.9 101 38.6
BraA05t20949Z Brassica rapa HOM05D006121 ORTHO05D009559 3.0e-10 70.9 91 39.6
BcaC02g10718 Brassica carinata HOM05D006121 ORTHO05D009559 4.0e-10 70.5 80 41.2
BcaC08g43032 Brassica carinata HOM05D006121 ORTHO05D009559 4.0e-10 70.5 101 38.6
Carub.0004s1788 Capsella rubella HOM05D009492 ORTHO05D011693 4.0e-10 70.5 247 23.1
BcaC09g49805 Brassica carinata HOM05D006121 ORTHO05D023846 6.8e-10 69.7 45 71.1
CARHR174650 Cardamine hirsuta HOM05D008458 ORTHO05D010628 6.8e-10 69.7 142 31.0
Sp4g04860 Schrenkiella parvula HOM05D010772 ORTHO05D005680 6.8e-10 69.7 199 24.6
Carub.0072s0001 Capsella rubella HOM05D010629 ORTHO05D005680 8.9e-10 69.3 144 25.7
AT1G46696 Arabidopsis thaliana HOM05D009492 ORTHO05D011693 1.2e-09 68.9 161 24.8
AT3G30230 Arabidopsis thaliana HOM05D008458 ORTHO05D010628 1.2e-09 68.9 122 35.2
BcaC08g44795 Brassica carinata HOM05D006121 ORTHO05D027423 2.0e-09 68.2 104 43.3
BolC4t23765H Brassica oleracea HOM05D003421 ORTHO05D003268 2.0e-09 68.2 174 29.3
BcaC08g44150 Brassica carinata HOM05D006121 ORTHO05D009559 3.4e-09 67.4 69 52.2
Carub.0003s2807 Capsella rubella HOM05D010629 ORTHO05D005680 4.4e-09 67.0 144 25.0
BcaC02g10790 Brassica carinata HOM05D006121 ORTHO05D023846 7.5e-09 66.2 112 39.3
BcaC03g16668 Brassica carinata HOM05D006121 ORTHO05D009559 7.5e-09 66.2 81 42.0
BcaC04g20824 Brassica carinata HOM05D006121 ORTHO05D013509 7.5e-09 66.2 208 29.3
Carub.0003s2830 Capsella rubella HOM05D009492 ORTHO05D011693 7.5e-09 66.2 172 24.4
BcaC06g34988 Brassica carinata HOM05D006121 ORTHO05D009559 1.3e-08 65.5 58 56.9
BcaC04g19800 Brassica carinata HOM05D006121 ORTHO05D023846 1.7e-08 65.1 45 62.2
Carub.0004s1088 Capsella rubella HOM05D010629 ORTHO05D005680 2.8e-08 64.3 138 35.5
BcaC01g02164 Brassica carinata HOM05D008386 ORTHO05D010572 4.9e-08 63.5 190 30.0
Carub.0007s3050 Capsella rubella HOM05D010629 ORTHO05D005680 4.9e-08 63.5 153 23.5
CARHR119450 Cardamine hirsuta HOM05D006121 ORTHO05D043487 4.9e-08 63.5 85 38.8
AT1G20400 Arabidopsis thaliana HOM05D011598 ORTHO05D013181 6.3e-08 63.2 139 29.5
BcaC03g15125 Brassica carinata HOM05D006121 ORTHO05D009559 8.3e-08 62.8 101 36.6
AT3G42060 Arabidopsis thaliana HOM05D010629 ORTHO05D005680 1.1e-07 62.4 140 28.6
BcaC04g20966 Brassica carinata HOM05D006121 ORTHO05D009559 1.8e-07 61.6 156 34.6
AL3G43600 Arabidopsis lyrata HOM05D010629 ORTHO05D005680 2.4e-07 61.2 136 30.1
BcaC08g44151 Brassica carinata HOM05D006121 ORTHO05D009559 2.4e-07 61.2 92 43.5
BolC8t48644H Brassica oleracea HOM05D002078 ORTHO05D005680 2.4e-07 61.2 134 27.6
BcaC04g22048 Brassica carinata HOM05D006121 ORTHO05D009559 3.2e-07 60.8 63 44.4
Sp6g07550 Schrenkiella parvula HOM05D010772 ORTHO05D005680 3.2e-07 60.8 129 27.1
BcaC04g23560 Brassica carinata HOM05D006121 ORTHO05D013509 9.2e-07 59.3 200 30.5
BcaC08g44457 Brassica carinata HOM05D006121 ORTHO05D009559 1.6e-06 58.5 75 44.0
AL9U10150 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 3.5e-06 57.4 128 30.5
Aa31sc374G10 Aethionema arabicum HOM05D028239 ORTHO05D038176 5.9e-06 56.6 87 35.6
AL3G49830 Arabidopsis lyrata HOM05D011598 ORTHO05D013181 5.9e-06 56.6 126 28.6
BcaC02g10683 Brassica carinata HOM05D008386 ORTHO05D010572 5.9e-06 56.6 215 27.4
BcaC07g38368 Brassica carinata HOM05D002078 ORTHO05D005680 5.9e-06 56.6 118 28.0
CARHR181090 Cardamine hirsuta HOM05D008458 ORTHO05D010628 7.8e-06 56.2 85 35.3


User provided reference genes

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