Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22061 Brassica carinata HOM05D000936 ORTHO05D005107 1.6e-77 292.7 152 100.0
C09p23950 Brassica napus HOM05D000696 ORTHO05D005107 7.9e-61 237.3 124 99.2
BcaB07g33040 Brassica carinata HOM05D000936 ORTHO05D005107 5.7e-59 231.1 209 67.0
Sp1g41890 Schrenkiella parvula HOM05D000936 ORTHO05D005107 1.3e-58 229.9 209 66.0
Thhalv10011270m.g Eutrema salsugineum HOM05D000936 ORTHO05D005107 8.2e-58 227.3 209 66.0
BolC1t02608H Brassica oleracea HOM05D000936 ORTHO05D005107 2.4e-57 225.7 209 65.6
AL1G64570 Arabidopsis lyrata HOM05D000936 ORTHO05D005107 5.3e-57 224.6 209 65.1
BcaC09g50320 Brassica carinata HOM05D000936 ORTHO05D005107 5.3e-57 224.6 209 65.1
A01p21320 Brassica napus HOM05D000936 ORTHO05D005107 5.3e-57 224.6 209 65.1
C01p26670 Brassica napus HOM05D000936 ORTHO05D005107 5.3e-57 224.6 209 65.1
Carub.0001s4482 Capsella rubella HOM05D000936 ORTHO05D005107 5.3e-57 224.6 209 65.1
AT1G54350 Arabidopsis thaliana HOM05D000936 ORTHO05D005107 9.0e-57 223.8 209 64.6
BraA01t02039Z Brassica rapa HOM05D000936 ORTHO05D005107 9.0e-57 223.8 209 64.6
CARHR046020 Cardamine hirsuta HOM05D000936 ORTHO05D005107 1.2e-56 223.4 209 64.6
THA.LOC104815715 Tarenaya hassleriana HOM05D000936 ORTHO05D005107 1.3e-55 219.9 209 62.7
Aa31sc115G70 Aethionema arabicum HOM05D000936 ORTHO05D005107 2.9e-55 218.8 209 62.2
Cfa017781 Carpinus fangiana HOM05D000936 ORTHO05D005107 1.4e-52 209.9 209 59.8
Ciclev10004357m.g Citrus clementina HOM05D000936 ORTHO05D005107 1.8e-52 209.5 209 59.3
Thecc.07G192500 Theobroma cacao HOM05D000936 ORTHO05D005107 1.8e-52 209.5 209 59.3
ECA236G1665 Erigeron canadensis HOM05D000936 ORTHO05D005107 2.3e-52 209.1 209 59.3
ClCG02G018890 Citrullus lanatus HOM05D000936 ORTHO05D005107 3.0e-52 208.8 209 59.8
Haze_18446 Corylus avellana HOM05D000936 ORTHO05D005107 3.9e-52 208.4 209 59.3
Sabra10G0135700 Salix brachista HOM05D000936 ORTHO05D001411 3.9e-52 208.4 209 59.3
TWI59G0187 Tripterygium wilfordii HOM05D000936 ORTHO05D005107 3.9e-52 208.4 209 59.3
MELO3C019602.2 Cucumis melo HOM05D000936 ORTHO05D005107 6.7e-52 207.6 209 59.3
Potri.010G176400 Populus trichocarpa HOM05D000936 ORTHO05D005107 6.7e-52 207.6 209 59.3
Medtr2g062790 Medicago truncatula HOM05D000936 ORTHO05D005107 8.8e-52 207.2 209 58.4
PGR042G2500 Punica granatum HOM05D000936 ORTHO05D005107 1.1e-51 206.8 209 58.9
Eucgr.F04488 Eucalyptus grandis HOM05D000936 ORTHO05D005107 1.5e-51 206.5 209 58.9
HanXRQChr11g0335891 Helianthus annuus HOM05D000936 ORTHO05D005107 1.5e-51 206.5 209 58.4
Psat1g131040 Pisum sativum HOM05D000936 ORTHO05D005107 1.5e-51 206.5 209 58.4
arahy.Tifrunner.gnm1.ann1.LF646F Arachis hypogaea HOM05D000936 ORTHO05D005107 2.0e-51 206.1 209 58.9
Prupe.4G123900 Prunus persica HOM05D000936 ORTHO05D005107 2.0e-51 206.1 209 58.9
CsaV3_6G013300 Cucumis sativus L. HOM05D000936 ORTHO05D005107 3.3e-51 205.3 209 58.4
QL04p096609 Quercus lobata HOM05D000936 ORTHO05D005107 3.3e-51 205.3 209 58.4
CiPaw.16G078800 Carya illinoinensis HOM05D000936 ORTHO05D005107 4.4e-51 204.9 209 58.4
Lsat_1_v5_gn_7_111041 Lactuca sativa HOM05D000936 ORTHO05D005107 4.4e-51 204.9 209 57.9
Sed0019803 Sechium edule HOM05D000936 ORTHO05D005107 4.4e-51 204.9 209 58.9
TAR624G0750 Trochodendron aralioides HOM05D000936 ORTHO05D005107 4.4e-51 204.9 209 57.9
Aqoxy1G01341 Aquilegia oxysepala HOM05D000936 ORTHO05D005107 5.7e-51 204.5 209 57.9
Ca_03315_v3 Cicer arietinum L. HOM05D000936 ORTHO05D005107 5.7e-51 204.5 209 57.4
Nn7g38429 Nelumbo nucifera HOM05D000936 ORTHO05D005107 5.7e-51 204.5 209 58.4
PSO541G4061 Papaver somniferum HOM05D000936 ORTHO05D005107 5.7e-51 204.5 209 58.4
TPR.G3637 Trifolium pratense HOM05D000936 ORTHO05D005107 7.4e-51 204.1 209 58.4
Lalb_Chr25g0284041 Lupinus albus HOM05D000936 ORTHO05D005107 9.7e-51 203.8 209 57.9
RcHm_v2.0_Chr5g0022531 Rosa chinensis HOM05D000936 ORTHO05D005107 9.7e-51 203.8 209 57.9
FvH4_3g13561 Fragaria vesca HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 57.9
Gohir.A01G023000 Gossypium hirsutum HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 57.9
Gorai.002G023500 Gossypium raimondii HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 57.9
PSO675G2338 Papaver somniferum HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 58.4
Peaxi162Scf00006g02411 Petunia axillaris HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 57.9
Sopen12g008200 Solanum pennellii HOM05D000936 ORTHO05D005107 1.3e-50 203.4 209 59.3
Atru.chr1.4 Acer truncatum HOM05D000936 ORTHO05D005107 1.7e-50 203.0 209 57.9
Gohir.D01G021000 Gossypium hirsutum HOM05D000936 ORTHO05D005107 1.7e-50 203.0 209 57.9
CSS0044630 Camellia sinensis var. sinensis HOM05D000936 ORTHO05D005107 2.2e-50 202.6 209 57.9
Oeu017915.1 Olea europaea HOM05D000936 ORTHO05D005107 2.2e-50 202.6 209 57.9
Phvul.005G044400 Phaseolus vulgaris HOM05D000936 ORTHO05D005107 2.2e-50 202.6 209 57.4
FAN21G1952 Fragaria x ananassa HOM05D000936 ORTHO05D005107 2.8e-50 202.2 209 57.4
Nitab4.5_0001995g0030 Nicotiana tabacum HOM05D000936 ORTHO05D005107 2.8e-50 202.2 209 57.4
Actinidia03634 Actinidia chinensis HOM05D000936 ORTHO05D005107 3.7e-50 201.8 209 57.9
Glyma.08G160900 Glycine max HOM05D000936 ORTHO05D005107 3.7e-50 201.8 209 56.5
Manes.03G076150 Manihot esculenta HOM05D000936 ORTHO05D005107 3.7e-50 201.8 209 57.9
Nitab4.5_0000388g0010 Nicotiana tabacum HOM05D000936 ORTHO05D005107 3.7e-50 201.8 209 57.4
Dinv42447 Davidia involucrata HOM05D000936 ORTHO05D005107 4.8e-50 201.4 209 57.4
Rhsim04G0003900 Rhododendron simsii HOM05D000936 ORTHO05D005107 6.3e-50 201.1 222 55.4
SGA_v2.0_scaffold239G43992 Striga asiatica HOM05D000936 ORTHO05D005107 6.3e-50 201.1 209 57.4
CAN.G67.4 Capsicum annuum HOM05D000936 ORTHO05D005107 8.2e-50 200.7 209 56.9
ECA232G0034 Erigeron canadensis HOM05D000936 ORTHO05D005107 8.2e-50 200.7 209 58.4
Sc02g0002940 Simmondsia chinensis HOM05D000936 ORTHO05D005107 8.2e-50 200.7 209 57.9
GSVIVG01036685001 Vitis vinifera HOM05D000936 ORTHO05D005107 8.2e-50 200.7 209 57.4
Cc00_g09060 Coffea canephora HOM05D000936 ORTHO05D005107 1.1e-49 200.3 209 56.9
CANSAT56G3090 Cannabis sativa HOM05D000936 ORTHO05D005107 1.4e-49 199.9 209 57.4
Hund03214 Selenicereus undatus HOM05D000936 ORTHO05D005107 1.4e-49 199.9 209 56.9
Migut.H01645 Erythranthe guttata HOM05D000936 ORTHO05D005107 2.4e-49 199.1 209 57.4
SEGI_28941 Sequoiadendron giganteum HOM05D000936 ORTHO05D005107 3.1e-49 198.7 209 56.9
Lj3g0022291 Lotus japonicus HOM05D000936 ORTHO05D005107 4.1e-49 198.4 209 56.0
Zm00001eb338660 Zea mays HOM05D000936 ORTHO05D005107 5.3e-49 198.0 209 56.5
CBR_g26492 Chara braunii HOM05D000936 ORTHO05D005107 9.1e-49 197.2 154 67.5
DCAR_016855 Daucus carota HOM05D000936 ORTHO05D005107 1.5e-48 196.4 209 56.0
HPP92_026769 Vanilla planifolia HOM05D000936 ORTHO05D005107 1.5e-48 196.4 209 56.5
SalBow8G2375 Salvia bowleyana HOM05D000936 ORTHO05D005107 2.0e-48 196.1 209 55.0
ATR1136G108 Amborella trichopoda HOM05D000936 ORTHO05D005107 2.6e-48 195.7 209 56.0
MD10G1219900 Malus domestica HOM05D000936 ORTHO05D005107 5.9e-48 194.5 209 55.5
AUR62020749 Chenopodium quinoa HOM05D000936 ORTHO05D005107 7.7e-48 194.1 209 55.0
vmacro09758 Vaccinium macrocarpon HOM05D000936 ORTHO05D005107 7.7e-48 194.1 236 51.3
Os01g0218700 Oryza sativa ssp. japonica HOM05D000936 ORTHO05D005107 1.0e-47 193.7 209 55.5
EL10Ac2g03607 Beta vulgaris HOM05D000936 ORTHO05D005107 2.9e-47 192.2 209 54.5
AUR62027964 Chenopodium quinoa HOM05D000936 ORTHO05D005107 2.9e-47 192.2 209 54.5
MD10G1220300 Malus domestica HOM05D000936 ORTHO05D005107 1.1e-46 190.3 218 53.7
Phvul.005G044300 Phaseolus vulgaris HOM05D000936 ORTHO05D005107 1.1e-46 190.3 209 54.5
HanXRQChr07g0190671 Helianthus annuus HOM05D000936 ORTHO05D005107 3.2e-46 188.7 209 53.6
CDE04G1459 Ceratophyllum demersum HOM05D000936 ORTHO05D005107 7.2e-46 187.6 209 53.1
Lalb_Chr01g0015671 Lupinus albus HOM05D000936 ORTHO05D005107 4.7e-45 184.9 209 53.6
Lj8A190G37 Lonicera japonica HOM05D000936 ORTHO05D005107 1.0e-44 183.7 266 46.2
MD10G1220200 Malus domestica HOM05D000936 ORTHO05D005107 1.4e-44 183.3 209 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1171 Anthoceros agrestis HOM05D000936 ORTHO05D005107 3.0e-44 182.2 209 52.6
SMO117G0099 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 3.0e-44 182.2 209 50.7
MD10G1220400 Malus domestica HOM05D000936 ORTHO05D005107 6.7e-44 181.0 209 51.7
Mapoly0094s0070 Marchantia polymorpha HOM05D000936 ORTHO05D005107 1.4e-41 173.3 209 50.2
COL.COLO4_32277 Corchorus olitorius HOM05D000936 ORTHO05D005107 4.1e-41 171.8 188 55.9
Pp3c6_11470 Physcomitrium patens HOM05D000936 ORTHO05D005107 5.0e-39 164.9 209 48.3
FAN11G1021 Fragaria x ananassa HOM05D000936 ORTHO05D005107 1.9e-38 162.9 186 54.3
Mapoly0025s0137 Marchantia polymorpha HOM05D000936 ORTHO05D005107 8.8e-36 154.1 209 45.9
CBR_g26493 Chara braunii HOM05D000936 ORTHO05D005107 1.2e-35 153.7 209 46.9
Cre10.g439000 Chlamydomonas reinhardtii HOM05D000936 ORTHO05D005107 9.7e-35 150.6 209 46.4
PRCOL_00001508 Prasinoderma coloniale HOM05D000936 ORTHO05D005107 3.7e-34 148.7 202 42.6
Solyc12g017420.2 Solanum lycopersicum HOM05D000936 ORTHO05D005107 4.1e-33 145.2 173 54.9
Pp3c5_21800 Physcomitrium patens HOM05D000936 ORTHO05D005107 1.0e-31 140.6 205 42.9
MCO13G518 Micromonas commoda HOM05D000936 ORTHO05D005107 5.0e-31 138.3 209 42.1
Hma1.2p1_1417F.1_g282190 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 7.2e-30 134.4 104 72.1
Hma1.2p1_1866F.1_g305833 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 7.2e-30 134.4 104 72.1
SMO268G0012 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 7.2e-30 134.4 209 42.6
QL04p096516 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-29 133.7 108 69.4
SMO268G0022 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 2.7e-29 132.5 209 41.6
SMO174G0196 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 6.1e-29 131.3 209 41.1
SMO296G0002 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 6.1e-29 131.3 209 41.1
SMO296G0015 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 6.1e-29 131.3 209 41.6
SMO308G0071 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 1.0e-28 130.6 209 41.1
PGSC0003DMG401009662 Solanum tuberosum HOM05D000936 ORTHO05D005107 1.4e-28 130.2 93 78.5
CSS0019150 Camellia sinensis var. sinensis HOM05D000936 ORTHO05D005107 2.0e-27 126.3 93 73.1
Cpa.g.sc118.20 Carica papaya HOM05D000936 ORTHO05D005107 2.1e-21 106.3 65 83.1
Manes.03G076300 Manihot esculenta HOM05D000936 ORTHO05D005107 3.6e-21 105.5 69 78.3
unitig_32.g11069 Utricularia gibba HOM05D000936 ORTHO05D005107 1.0e-20 104.0 64 81.2
Duzib251G0327 Durio zibethinus HOM05D000936 ORTHO05D005107 1.8e-20 103.2 64 81.2
RcHm_v2.0_Chr1g0347801 Rosa chinensis HOM05D000936 ORTHO05D005107 3.0e-20 102.4 64 82.8
Psat3g193720 Pisum sativum HOM05D000936 ORTHO05D005107 7.5e-19 97.8 64 76.6
MBI18_g39257_MAGBIO Magnolia biondii HOM05D000936 ORTHO05D005107 2.2e-18 96.3 69 72.5
Psat7g094120 Pisum sativum HOM05D000936 ORTHO05D005107 2.8e-18 95.9 69 73.9
RcHm_v2.0_Chr2g0171001 Rosa chinensis HOM05D000936 ORTHO05D005107 6.3e-18 94.7 72 72.2
Hma1.2p1_0042F.1_g025460 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.5e-14 83.6 57 73.7
Hma1.2p1_0405F.1_g145565 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.5e-14 83.6 57 73.7
Hma1.2p1_0451F.1_g155765 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.5e-14 83.6 57 73.7
Hma1.2p1_2406F.1_g321475 Hydrangea macrophylla HOM05D000936 ORTHO05D005107 1.5e-14 83.6 57 73.7
Lsat_1_v5_gn_2_66041 Lactuca sativa HOM05D000936 ORTHO05D005107 3.3e-14 82.4 81 60.5
Psat3g106120 Pisum sativum HOM05D000936 ORTHO05D023081 8.3e-10 67.8 51 74.5
Pp3c2_10620 Physcomitrium patens HOM05D000936 ORTHO05D005107 1.1e-09 67.4 209 25.4
Pp3c14_11150 Physcomitrium patens HOM05D000936 ORTHO05D005107 1.2e-08 63.9 210 26.2
SMO361G0694 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 1.0e-07 60.8 198 25.3
MBI09_g37386_MAGBIO Magnolia biondii HOM05D001895 ORTHO05D022876 1.7e-07 60.1 34 82.4
Psat3g106000 Pisum sativum HOM05D000936 ORTHO05D005107 2.3e-07 59.7 44 77.3
SMO361G0711 Selaginella moellendorffii HOM05D000936 ORTHO05D005107 6.6e-07 58.2 202 25.2
Mapoly0066s0022 Marchantia polymorpha HOM05D000936 ORTHO05D005107 2.5e-06 56.2 204 23.5
MBI02_g39606_MAGBIO Magnolia biondii HOM05D002757 ORTHO05D022876 9.5e-06 54.3 43 65.1


User provided reference genes

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