Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC04g22032 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1595.9 856 100.0
C09p24290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1563.1 859 98.1
BolC9t55346H Brassica oleracea HOM05D006048 ORTHO05D007642 0.0e+00 1550.0 870 96.8
A09p19290 Brassica napus HOM05D006048 ORTHO05D007642 0.0e+00 1465.7 860 91.4
BraA09t37546Z Brassica rapa HOM05D006048 ORTHO05D007642 0.0e+00 1455.3 871 90.2
BcaB07g31106 Brassica carinata HOM05D006048 ORTHO05D007642 0.0e+00 1216.8 878 79.8
AL1G65400 Arabidopsis lyrata HOM05D006048 ORTHO05D007642 2.1e-275 952.6 925 63.6
AT1G54920 Arabidopsis thaliana HOM05D006048 ORTHO05D007642 6.1e-267 924.5 919 62.7
CARHR284550 Cardamine hirsuta HOM05D006048 ORTHO05D007642 3.0e-258 895.6 914 61.9
Carub.0002s0845 Capsella rubella HOM05D006048 ORTHO05D007642 8.5e-253 877.5 907 58.8
Aa31LG2G11800 Aethionema arabicum HOM05D006048 ORTHO05D007642 2.6e-217 759.6 970 52.8
THA.LOC104805873 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 9.0e-162 575.1 1039 41.4
THA.LOC104820894 Tarenaya hassleriana HOM05D006048 ORTHO05D007642 1.5e-161 574.3 1040 40.1
Duzib128G0698 Durio zibethinus HOM05D006048 ORTHO05D007642 2.1e-102 377.9 994 33.6
Thecc.05G304700 Theobroma cacao HOM05D006048 ORTHO05D007642 3.1e-93 347.4 991 31.1
Gorai.007G296200 Gossypium raimondii HOM05D006048 ORTHO05D007642 3.7e-91 340.5 971 32.1
Gohir.A11G264200 Gossypium hirsutum HOM05D006048 ORTHO05D007642 2.0e-89 334.7 977 31.8
Gohir.D11G274400 Gossypium hirsutum HOM05D006048 ORTHO05D007642 4.6e-89 333.6 970 31.9
Ciclev10000202m.g Citrus clementina HOM05D006048 ORTHO05D007642 1.3e-88 332.0 958 31.8
COL.COLO4_13482 Corchorus olitorius HOM05D006048 ORTHO05D007642 5.6e-87 326.6 892 33.7
Manes.09G166100 Manihot esculenta HOM05D006048 ORTHO05D007642 2.0e-84 318.2 1069 30.3
Sabra13G0025400 Salix brachista HOM05D006048 ORTHO05D007642 9.9e-84 315.8 1069 29.6
Cpa.g.sc48.39 Carica papaya HOM05D006048 ORTHO05D007642 2.9e-83 314.3 1014 30.3
Potri.013G023600 Populus trichocarpa HOM05D006048 ORTHO05D007642 6.4e-83 313.2 1070 29.6
Prupe.6G327100 Prunus persica HOM05D006048 ORTHO05D007642 8.3e-83 312.8 691 35.2
Potri.005G034100 Populus trichocarpa HOM05D006048 ORTHO05D007642 2.7e-81 307.8 1050 28.9
QL03p006882 Quercus lobata HOM05D006048 ORTHO05D007642 2.3e-80 304.7 814 32.7
Medtr1g082840 Medicago truncatula HOM05D006048 ORTHO05D007642 1.5e-79 302.0 915 30.3
TWI56G0330 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 9.5e-79 299.3 744 32.4
TWI12G1173 Tripterygium wilfordii HOM05D006048 ORTHO05D007642 1.6e-78 298.5 849 30.4
Sabra05G0036000 Salix brachista HOM05D006048 ORTHO05D007642 4.7e-78 297.0 1081 28.6
Cfa006579 Carpinus fangiana HOM05D006048 ORTHO05D007642 1.2e-76 292.4 684 34.5
FvH4_6g05680 Fragaria vesca HOM05D006048 ORTHO05D007642 3.4e-76 290.8 999 29.0
FAN02G2040 Fragaria x ananassa HOM05D006048 ORTHO05D007642 9.9e-76 289.3 1003 29.3
Haze_04204 Corylus avellana HOM05D006048 ORTHO05D007642 1.3e-75 288.9 738 32.7
GSVIVG01000040001 Vitis vinifera HOM05D006048 ORTHO05D007642 8.4e-75 286.2 527 36.4
FAN14G2795 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.7e-73 281.2 1021 28.3
Glyma.20G233200 Glycine max HOM05D006048 ORTHO05D007642 6.0e-73 280.0 913 29.6
ClCG02G015880 Citrullus lanatus HOM05D006048 ORTHO05D007642 7.8e-73 279.6 995 28.7
MD12G1220300 Malus domestica HOM05D006048 ORTHO05D007642 7.8e-73 279.6 1010 28.7
Lalb_Chr21g0310721 Lupinus albus HOM05D006048 ORTHO05D007642 2.3e-72 278.1 845 29.3
Lj5g0003009 Lotus japonicus HOM05D006048 ORTHO05D007642 3.0e-72 277.7 845 29.8
FAN14G2991 Fragaria x ananassa HOM05D006048 ORTHO05D007642 8.7e-72 276.2 1021 27.7
RcHm_v2.0_Chr3g0454571 Rosa chinensis HOM05D006048 ORTHO05D007642 2.5e-71 274.6 680 33.5
Sed0020620 Sechium edule HOM05D006048 ORTHO05D007642 2.5e-71 274.6 975 28.7
Ca_10107_v3 Cicer arietinum L. HOM05D006048 ORTHO05D007642 7.3e-71 273.1 890 29.4
CsaV3_2G005180 Cucumis sativus L. HOM05D006048 ORTHO05D007642 7.3e-71 273.1 1018 29.1
Lalb_Chr06g0167761 Lupinus albus HOM05D006048 ORTHO05D007642 1.6e-70 271.9 691 31.4
Glyma.10G155100 Glycine max HOM05D006048 ORTHO05D007642 2.8e-70 271.2 861 28.7
FAN05G1530 Fragaria x ananassa HOM05D006048 ORTHO05D007642 4.7e-70 270.4 1046 27.6
Phvul.007G180600 Phaseolus vulgaris HOM05D006048 ORTHO05D007642 6.2e-70 270.0 907 30.0
CSS0040601 Camellia sinensis var. sinensis HOM05D006048 ORTHO05D007642 1.8e-69 268.5 530 35.8
MELO3C004275.2 Cucumis melo HOM05D006048 ORTHO05D007642 1.2e-68 265.8 965 29.0
FAN09G2502 Fragaria x ananassa HOM05D006048 ORTHO05D007642 2.0e-68 265.0 1009 28.1
MD04G1206500 Malus domestica HOM05D006048 ORTHO05D007642 1.3e-67 262.3 754 30.9
VMungo0720G0675 Vigna mungo HOM05D006048 ORTHO05D007642 1.3e-67 262.3 915 29.4
Eucgr.H04481 Eucalyptus grandis HOM05D006048 ORTHO05D007642 3.2e-66 257.7 943 28.8
TPR.G6104 Trifolium pratense HOM05D006048 ORTHO05D007642 1.2e-65 255.8 855 28.0
Peaxi162Scf00037g00236 Petunia axillaris HOM05D006048 ORTHO05D007642 7.8e-65 253.1 528 32.6
Hma1.2p1_0928F.1_g237870 Hydrangea macrophylla HOM05D006048 ORTHO05D007642 1.7e-64 251.9 953 27.6
Dinv23949 Davidia involucrata HOM05D006048 ORTHO05D007642 2.3e-64 251.5 314 46.8
Migut.B01039 Erythranthe guttata HOM05D006048 ORTHO05D007642 2.5e-63 248.1 555 32.6
Actinidia05707 Actinidia chinensis HOM05D006048 ORTHO05D007642 5.6e-63 246.9 1049 28.5
Actinidia23630 Actinidia chinensis HOM05D006048 ORTHO05D007642 7.3e-63 246.5 1052 27.0
TAR636G0181 Trochodendron aralioides HOM05D006048 ORTHO05D007642 7.3e-63 246.5 965 28.2
EL10Ac4g09343 Beta vulgaris HOM05D006048 ORTHO05D007642 3.6e-62 244.2 547 32.5
Oeu017488.1 Olea europaea HOM05D006048 ORTHO05D007642 1.4e-61 242.3 522 32.8
Cc02_g33600 Coffea canephora HOM05D006048 ORTHO05D007642 6.9e-61 240.0 526 33.8
Nitab4.5_0005388g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 6.9e-61 240.0 604 29.5
FAN05G2734 Fragaria x ananassa HOM05D006048 ORTHO05D007642 1.2e-60 239.2 995 27.1
PGR031G0290 Punica granatum HOM05D006048 ORTHO05D007642 1.2e-60 239.2 1006 28.0
Nn4g26237 Nelumbo nucifera HOM05D006048 ORTHO05D007642 2.0e-60 238.4 844 28.6
PGSC0003DMG401028588 Solanum tuberosum HOM05D006048 ORTHO05D007642 2.0e-60 238.4 752 27.7
Nitab4.5_0008677g0020 Nicotiana tabacum HOM05D006048 ORTHO05D007642 2.6e-60 238.0 602 29.7
Psat6g149640 Pisum sativum HOM05D006048 ORTHO05D007642 3.4e-60 237.7 919 28.2
Nn1g02208 Nelumbo nucifera HOM05D006048 ORTHO05D007642 1.9e-58 231.9 919 29.2
PSO302G0271 Papaver somniferum HOM05D006048 ORTHO05D007642 4.2e-58 230.7 323 41.2
AUR62000837 Chenopodium quinoa HOM05D006048 ORTHO05D007642 7.1e-58 229.9 647 30.1
PSO170G0056 Papaver somniferum HOM05D006048 ORTHO05D007642 1.6e-57 228.8 323 40.9
AUR62005136 Chenopodium quinoa HOM05D006048 ORTHO05D007642 4.6e-57 227.3 526 32.3
Hund07062 Selenicereus undatus HOM05D006048 ORTHO05D007642 4.6e-57 227.3 519 32.2
Solyc01g098870.3 Solanum lycopersicum HOM05D006048 ORTHO05D007642 6.0e-57 226.9 694 28.7
Rhsim07G0182400 Rhododendron simsii HOM05D006048 ORTHO05D007642 1.8e-56 225.3 651 32.7
CAN.G1077.18 Capsicum annuum HOM05D006048 ORTHO05D007642 3.0e-56 224.6 738 27.8
Sc06g0003370 Simmondsia chinensis HOM05D006048 ORTHO05D007642 5.1e-56 223.8 620 30.0
Sopen01g042410 Solanum pennellii HOM05D006048 ORTHO05D007642 5.1e-56 223.8 733 27.1
Aqoxy2G03311 Aquilegia oxysepala HOM05D006048 ORTHO05D007642 4.3e-55 220.7 927 27.3
MSTRG.20430 Avicennia marina HOM05D006048 ORTHO05D007642 3.7e-54 217.6 712 28.9
SGA_v2.0_scaffold172G38965 Striga asiatica HOM05D006048 ORTHO05D007642 1.1e-53 216.1 537 30.5
ECA238G0871 Erigeron canadensis HOM05D006048 ORTHO05D007642 6.9e-53 213.4 902 27.5
Ah.06g189270 Amaranthus hybridus HOM05D006048 ORTHO05D007642 1.2e-52 212.6 863 28.0
SalBow8G1366 Salvia bowleyana HOM05D006048 ORTHO05D007642 7.9e-49 199.9 911 25.2
HanXRQChr15g0463081 Helianthus annuus HOM05D006048 ORTHO05D007642 1.3e-48 199.1 873 26.2
MBI19_g16658_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.3e-47 194.1 861 26.8
ATR0626G180 Amborella trichopoda HOM05D006048 ORTHO05D007642 4.8e-46 190.7 323 37.8
Atru.chr2.428 Acer truncatum HOM05D006048 ORTHO05D007642 2.2e-43 181.8 176 50.6
Lsat_1_v5_gn_2_64861 Lactuca sativa HOM05D006048 ORTHO05D007642 1.1e-42 179.5 323 35.3
vmacro05021 Vaccinium macrocarpon HOM05D006048 ORTHO05D007642 4.2e-42 177.6 897 26.1
CDE05G2441 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 6.7e-40 170.2 247 36.8
Os11g0148400 Oryza sativa ssp. japonica HOM05D006048 ORTHO05D007642 8.2e-38 163.3 558 25.8
SEGI_14627 Sequoiadendron giganteum HOM05D006048 ORTHO05D007642 2.3e-32 145.2 513 26.1
HPP92_011281 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.5e-31 141.7 200 37.0
HPP92_011303 Vanilla planifolia HOM05D006048 ORTHO05D007642 2.8e-30 138.3 210 36.2
Psat7g077840 Pisum sativum HOM05D006048 ORTHO05D007642 3.7e-30 137.9 178 41.6
Manes.08G121600 Manihot esculenta HOM05D006048 ORTHO05D007642 2.0e-28 132.1 682 27.0
AagrBONN_evm.TU.Sc2ySwM_344.3982 Anthoceros agrestis HOM05D006048 ORTHO05D007642 2.3e-24 118.6 339 28.9
Mapoly0011s0030 Marchantia polymorpha HOM05D006048 ORTHO05D007642 2.2e-22 112.1 228 29.4
CDE05G0200 Ceratophyllum demersum HOM05D006048 ORTHO05D007642 2.5e-18 98.6 191 31.4
SMO203G0156 Selaginella moellendorffii HOM05D006048 ORTHO05D007642 2.3e-16 92.0 226 28.8
CiPaw.07G016800 Carya illinoinensis HOM05D006048 ORTHO05D007642 2.0e-15 89.0 395 28.4
Atru.chr2.429 Acer truncatum HOM05D006048 ORTHO05D007642 9.7e-15 86.7 266 31.6
CiPaw.08G165500 Carya illinoinensis HOM05D006048 ORTHO05D007642 5.3e-13 80.9 80 51.2
MBI19_g40207_MAGBIO Magnolia biondii HOM05D006048 ORTHO05D007642 4.5e-12 77.8 245 28.6


User provided reference genes

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