Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g15387 Brassica carinata HOM05D066375 ORTHO05D027367 5.9e-112 407.5 203 100.0
C02p29990 Brassica napus HOM05D066375 ORTHO05D027367 2.2e-66 256.1 155 83.2
BraA03t09416Z Brassica rapa HOM05D000935 ORTHO05D027367 1.8e-20 103.6 65 83.1
BraA09t40014Z Brassica rapa HOM05D000935 ORTHO05D027367 1.5e-19 100.5 65 81.5
BcaC08g47155 Brassica carinata HOM05D000935 ORTHO05D001483 2.9e-10 69.7 105 43.8
BcaC08g47240 Brassica carinata HOM05D000935 ORTHO05D001483 2.9e-10 69.7 105 43.8
A07p42150 Brassica napus HOM05D000935 ORTHO05D001483 2.9e-10 69.7 105 43.8
C06p50720 Brassica napus HOM05D000935 ORTHO05D001483 2.9e-10 69.7 105 43.8
BolC6t40098H Brassica oleracea HOM05D000935 ORTHO05D001483 2.9e-10 69.7 105 43.8
Thhalv10018320m.g Eutrema salsugineum HOM05D000935 ORTHO05D001483 3.8e-10 69.3 105 42.9
BcaC03g15677 Brassica carinata HOM05D000935 ORTHO05D001483 5.0e-10 68.9 105 42.9
BraA07t31744Z Brassica rapa HOM05D000935 ORTHO05D001483 5.0e-10 68.9 105 42.9
A02p20730 Brassica napus HOM05D000935 ORTHO05D001483 8.5e-10 68.2 105 42.9
C02p32970 Brassica napus HOM05D000935 ORTHO05D001483 8.5e-10 68.2 105 42.9
BolC2t09397H Brassica oleracea HOM05D000935 ORTHO05D001483 8.5e-10 68.2 105 42.9
BraA02t07105Z Brassica rapa HOM05D000935 ORTHO05D001483 8.5e-10 68.2 105 42.9
Sp5g31650 Schrenkiella parvula HOM05D000935 ORTHO05D001483 8.5e-10 68.2 105 41.0
Aa31LG4G6580 Aethionema arabicum HOM05D000935 ORTHO05D001483 1.1e-09 67.8 101 42.6
BcaB05g24994 Brassica carinata HOM05D000935 ORTHO05D001483 1.4e-09 67.4 105 41.9
Carub.0002s2340 Capsella rubella HOM05D000935 ORTHO05D001483 1.4e-09 67.4 101 41.6
CARHR070040 Cardamine hirsuta HOM05D000935 ORTHO05D001483 1.9e-09 67.0 101 41.6
AL2G36630 Arabidopsis lyrata HOM05D000935 ORTHO05D001483 2.5e-09 66.6 101 41.6
AT1G76490 Arabidopsis thaliana HOM05D000935 ORTHO05D001483 7.2e-09 65.1 101 40.6
CiPaw.06G113700 Carya illinoinensis HOM05D000935 ORTHO05D001483 1.2e-08 64.3 79 44.3
QL02p015846 Quercus lobata HOM05D000935 ORTHO05D001483 7.9e-08 61.6 105 36.2
Rhsim11G0198700 Rhododendron simsii HOM05D000935 ORTHO05D001483 1.4e-07 60.8 90 42.2
GSVIVG01013435001 Vitis vinifera HOM05D000935 ORTHO05D001483 2.3e-07 60.1 108 36.1
THA.LOC104809909 Tarenaya hassleriana HOM05D000935 ORTHO05D001483 3.9e-07 59.3 101 37.6
Hund06350 Selenicereus undatus HOM05D000935 ORTHO05D001483 5.1e-07 58.9 105 35.2
SGA_v2.0_scaffold161G37870 Striga asiatica HOM05D000935 ORTHO05D001483 6.7e-07 58.5 108 34.3
SGA_v2.0_scaffold98G29310 Striga asiatica HOM05D000935 ORTHO05D001483 6.7e-07 58.5 108 34.3
Lsat_1_v5_gn_3_69080 Lactuca sativa HOM05D000935 ORTHO05D001483 8.8e-07 58.2 105 35.2
MBI01_g28407_MAGBIO Magnolia biondii HOM05D000935 ORTHO05D001483 8.8e-07 58.2 105 36.2
ECA247G1776 Erigeron canadensis HOM05D000935 ORTHO05D001483 1.1e-06 57.8 101 35.6
Migut.N01365 Erythranthe guttata HOM05D000935 ORTHO05D001483 1.1e-06 57.8 109 33.9
PGR102G3229 Punica granatum HOM05D000935 ORTHO05D001483 1.1e-06 57.8 105 35.2
SGA_v2.0_scaffold220G42633 Striga asiatica HOM05D000935 ORTHO05D001483 1.1e-06 57.8 108 35.2
TWI12G0952 Tripterygium wilfordii HOM05D000935 ORTHO05D001483 1.1e-06 57.8 101 35.6
CSS0044307 Camellia sinensis var. sinensis HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 35.6
ClCG08G009150 Citrullus lanatus HOM05D000935 ORTHO05D001483 1.5e-06 57.4 105 35.2
MELO3C026512.2 Cucumis melo HOM05D000935 ORTHO05D001483 1.5e-06 57.4 105 35.2
HanXRQChr09g0241951 Helianthus annuus HOM05D000935 ORTHO05D001483 1.5e-06 57.4 105 33.3
HanXRQChr17g0558581 Helianthus annuus HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 34.7
Lsat_1_v5_gn_8_129040 Lactuca sativa HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 34.7
Oeu050938.1 Olea europaea HOM05D000935 ORTHO05D001483 1.5e-06 57.4 105 34.3
Sed0016236 Sechium edule HOM05D000935 ORTHO05D001483 1.5e-06 57.4 105 35.2
Sopen03g005870 Solanum pennellii HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 34.7
SGA_v2.0_scaffold80G25810 Striga asiatica HOM05D000935 ORTHO05D001483 1.5e-06 57.4 108 35.2
THA.LOC104812013 Tarenaya hassleriana HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 36.6
Thecc.08G099100 Theobroma cacao HOM05D000935 ORTHO05D001483 1.5e-06 57.4 101 35.6
CsaV3_6G035980 Cucumis sativus L. HOM05D000935 ORTHO05D001483 2.0e-06 57.0 105 35.2
ECA232G4060 Erigeron canadensis HOM05D000935 ORTHO05D001483 2.0e-06 57.0 108 33.3
ECA246G4607 Erigeron canadensis HOM05D000935 ORTHO05D001483 2.0e-06 57.0 105 34.3
Migut.N02990 Erythranthe guttata HOM05D000935 ORTHO05D001483 2.0e-06 57.0 105 34.3
Lj2C506T1 Lonicera japonica HOM05D000935 ORTHO05D001483 2.0e-06 57.0 105 34.3
Lalb_Chr04g0249761 Lupinus albus HOM05D000935 ORTHO05D001483 2.0e-06 57.0 105 34.3
Lalb_Chr10g0105831 Lupinus albus HOM05D000935 ORTHO05D001483 2.0e-06 57.0 108 33.3
Atru.chr13.45 Acer truncatum HOM05D000935 ORTHO05D001483 2.6e-06 56.6 105 33.3
Actinidia17081 Actinidia chinensis HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 34.3
MSTRG.24907 Avicennia marina HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 33.3
CSS0013904 Camellia sinensis var. sinensis HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 33.3
Eucgr.F01818 Eucalyptus grandis HOM05D000935 ORTHO05D001483 2.6e-06 56.6 105 34.3
Eucgr.I01544 Eucalyptus grandis HOM05D000935 ORTHO05D001483 2.6e-06 56.6 105 34.3
HanXRQChr17g0558571 Helianthus annuus HOM05D000935 ORTHO05D001483 2.6e-06 56.6 101 34.7
Lsat_1_v5_gn_8_26061 Lactuca sativa HOM05D000935 ORTHO05D001483 2.6e-06 56.6 105 33.3
Oeu043405.1 Olea europaea HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 34.3
SGA_v2.0_scaffold26G11229 Striga asiatica HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 33.3
TWI56G0932 Tripterygium wilfordii HOM05D000935 ORTHO05D001483 2.6e-06 56.6 108 34.3
CiPaw.07G132900 Carya illinoinensis HOM05D000935 ORTHO05D001483 3.3e-06 56.2 105 33.3
Ca_06143_v3 Cicer arietinum L. HOM05D000935 ORTHO05D001483 3.3e-06 56.2 108 33.3
Cc07_g12220 Coffea canephora HOM05D000935 ORTHO05D001483 3.3e-06 56.2 101 34.7
Dinv03219 Davidia involucrata HOM05D000935 ORTHO05D001483 3.3e-06 56.2 108 33.3
Dinv05493 Davidia involucrata HOM05D000935 ORTHO05D001483 3.3e-06 56.2 108 34.3
Eucgr.F03606 Eucalyptus grandis HOM05D000935 ORTHO05D001483 3.3e-06 56.2 105 34.3
HanXRQChr16g0532181 Helianthus annuus HOM05D000935 ORTHO05D001483 3.3e-06 56.2 105 35.2
Hma1.2p1_0810F.1_g222020 Hydrangea macrophylla HOM05D000935 ORTHO05D001483 3.3e-06 56.2 108 33.3
Lsat_1_v5_gn_8_129061 Lactuca sativa HOM05D000935 ORTHO05D001483 3.3e-06 56.2 101 33.7
Manes.05G128600 Manihot esculenta HOM05D000935 ORTHO05D001483 3.3e-06 56.2 108 33.3
Peaxi162Scf01393g00015 Petunia axillaris HOM05D000935 ORTHO05D001483 3.3e-06 56.2 109 33.0
TPR.G33783 Trifolium pratense HOM05D000935 ORTHO05D001483 3.3e-06 56.2 105 34.3
TPR.G33799 Trifolium pratense HOM05D000935 ORTHO05D001483 3.3e-06 56.2 105 34.3
HPP92_017804 Vanilla planifolia HOM05D000935 ORTHO05D001483 3.3e-06 56.2 101 34.7
Actinidia17985 Actinidia chinensis HOM05D000935 ORTHO05D001483 4.4e-06 55.8 101 37.6
MSTRG.16962 Avicennia marina HOM05D000935 ORTHO05D001483 4.4e-06 55.8 108 33.3
CAN.G801.39 Capsicum annuum HOM05D000935 ORTHO05D001483 4.4e-06 55.8 101 33.7
Oeu045751.1 Olea europaea HOM05D000935 ORTHO05D001483 4.4e-06 55.8 101 33.7
SEGI_29977 Sequoiadendron giganteum HOM05D000935 ORTHO05D001483 4.4e-06 55.8 98 35.7
Ah.01g017720 Amaranthus hybridus HOM05D000935 ORTHO05D001483 5.7e-06 55.5 105 34.3
MSTRG.1006 Avicennia marina HOM05D000935 ORTHO05D001483 5.7e-06 55.5 108 32.4
MSTRG.22080 Avicennia marina HOM05D000935 ORTHO05D001483 5.7e-06 55.5 108 32.4
Cc10_g00230 Coffea canephora HOM05D000935 ORTHO05D001483 5.7e-06 55.5 105 33.3
PGR083G1754 Punica granatum HOM05D000935 ORTHO05D001483 5.7e-06 55.5 105 34.3
Solyc03g032020.4 Solanum lycopersicum HOM05D000935 ORTHO05D001483 5.7e-06 55.5 101 33.7
Sopen03g005860 Solanum pennellii HOM05D000935 ORTHO05D001483 5.7e-06 55.5 101 33.7
TAR628G0537 Trochodendron aralioides HOM05D000935 ORTHO05D001483 5.7e-06 55.5 108 33.3
Glyma.20G058000 Glycine max HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 32.4
Lsat_1_v5_gn_9_48281 Lactuca sativa HOM05D000935 ORTHO05D001483 7.4e-06 55.1 108 32.4
Medtr5g024880 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 33.3
Medtr5g026430 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 34.3
Medtr5g026450 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 34.3
Medtr5g026460 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 34.3
Medtr5g026480 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 34.3
Medtr5g026500 Medicago truncatula HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 34.3
Nitab4.5_0004448g0010 Nicotiana tabacum HOM05D000935 ORTHO05D001483 7.4e-06 55.1 101 33.7
PSO541G4492 Papaver somniferum HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 36.2
PSO675G8965 Papaver somniferum HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 36.2
Psat0s3229g0120 Pisum sativum HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 33.3
Potri.011G145000 Populus trichocarpa HOM05D000935 ORTHO05D001483 7.4e-06 55.1 101 33.7
Sabra11G0130000 Salix brachista HOM05D000935 ORTHO05D001483 7.4e-06 55.1 101 33.7
SalBow7G0019 Salvia bowleyana HOM05D000935 ORTHO05D001483 7.4e-06 55.1 108 33.3
Sc02g0009310 Simmondsia chinensis HOM05D000935 ORTHO05D001483 7.4e-06 55.1 108 33.3
VMungo0251G3006 Vigna mungo HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 33.3
VMungo0540G0363 Vigna mungo HOM05D000935 ORTHO05D001483 7.4e-06 55.1 105 32.4
Actinidia17145 Actinidia chinensis HOM05D000935 ORTHO05D001483 9.7e-06 54.7 108 33.3
Dinv40220 Davidia involucrata HOM05D000935 ORTHO05D001483 9.7e-06 54.7 108 33.3
Migut.C00353 Erythranthe guttata HOM05D000935 ORTHO05D001483 9.7e-06 54.7 108 32.4
Lsat_1_v5_gn_2_74261 Lactuca sativa HOM05D000935 ORTHO05D001483 9.7e-06 54.7 101 34.7
Oeu006115.1 Olea europaea HOM05D000935 ORTHO05D001483 9.7e-06 54.7 105 32.4
Peaxi162Scf00385g00039 Petunia axillaris HOM05D000935 ORTHO05D001483 9.7e-06 54.7 105 32.4
PGR042G0416 Punica granatum HOM05D000935 ORTHO05D001483 9.7e-06 54.7 102 34.3
SalBow5G1375 Salvia bowleyana HOM05D000935 ORTHO05D001483 9.7e-06 54.7 109 32.1
SMO203G0229 Selaginella moellendorffii HOM05D000935 ORTHO05D001483 9.7e-06 54.7 101 34.7
unitig_578.g16096 Utricularia gibba HOM05D000935 ORTHO05D001483 9.7e-06 54.7 108 33.3


User provided reference genes

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