Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14881 Brassica carinata HOM05D022129 ORTHO05D027289 6.2e-146 520.8 264 100.0
C02p23550 Brassica napus HOM05D022129 ORTHO05D027289 5.2e-68 261.9 155 87.1
BolC2t08484H Brassica oleracea HOM05D022129 ORTHO05D027289 2.9e-66 256.1 155 85.8
A02p10340 Brassica napus HOM05D022129 ORTHO05D006342 1.2e-43 181.0 120 83.3
A10p14500 Brassica napus HOM05D022129 ORTHO05D027289 1.3e-34 151.0 155 59.4
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 2.9e-18 96.7 102 57.8
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 6.5e-18 95.5 102 56.9
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 6.5e-18 95.5 102 56.9
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 6.5e-18 95.5 102 56.9
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 6.5e-18 95.5 102 56.9
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 1.4e-17 94.4 102 56.9
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.4e-17 94.4 102 55.9
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 4.2e-17 92.8 102 55.9
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 1.6e-16 90.9 102 55.9
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 4.6e-16 89.4 102 53.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 6.0e-16 89.0 102 52.0
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 2.3e-15 87.0 102 51.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 3.9e-15 86.3 102 52.0
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 5.1e-15 85.9 102 52.0
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 8.7e-15 85.1 102 53.9
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.5e-14 84.3 102 49.0
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 3.3e-14 83.2 102 51.0
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 5.7e-14 82.4 102 51.0
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 9.6e-14 81.6 102 50.0
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 1.3e-13 81.3 102 49.0
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.3e-13 81.3 103 49.5
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 1.6e-13 80.9 106 47.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 1.6e-13 80.9 102 51.0
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.1e-13 80.5 103 48.5
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 2.8e-13 80.1 102 51.0
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 3.7e-13 79.7 102 48.0
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 3.7e-13 79.7 102 50.0
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 4.8e-13 79.3 106 47.2
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 4.8e-13 79.3 102 50.0
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 4.8e-13 79.3 102 47.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 6.3e-13 79.0 102 49.0
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 6.3e-13 79.0 102 47.1
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 8.2e-13 78.6 102 48.0
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 8.2e-13 78.6 102 47.1
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 1.1e-12 78.2 73 57.5
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 1.1e-12 78.2 102 48.0
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 1.4e-12 77.8 102 49.0
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 1.4e-12 77.8 102 47.1
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.4e-12 77.8 102 47.1
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.4e-12 77.8 102 45.1
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.4e-12 77.8 102 50.0
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 1.8e-12 77.4 104 47.1
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 1.8e-12 77.4 102 47.1
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 1.8e-12 77.4 102 47.1
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.8e-12 77.4 102 48.0
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 2.4e-12 77.0 102 47.1
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 48.0
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 48.0
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 47.1
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 48.0
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 47.1
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 3.1e-12 76.6 102 47.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 4.1e-12 76.3 102 48.0
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 4.1e-12 76.3 102 49.0
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 4.1e-12 76.3 102 48.0
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 4.1e-12 76.3 102 48.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.1e-12 76.3 103 47.6
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 4.1e-12 76.3 101 47.5
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 5.3e-12 75.9 102 47.1
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 5.3e-12 75.9 102 47.1
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 5.3e-12 75.9 102 46.1
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 5.3e-12 75.9 102 49.0
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.3e-12 75.9 102 48.0
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 6.9e-12 75.5 102 44.1
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 6.9e-12 75.5 102 47.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 9.0e-12 75.1 102 47.1
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 9.0e-12 75.1 106 44.3
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 9.0e-12 75.1 102 47.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 9.0e-12 75.1 111 43.2
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 9.0e-12 75.1 102 48.0
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 9.0e-12 75.1 102 46.1
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 1.2e-11 74.7 102 46.1
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.5e-11 74.3 102 46.1
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-11 74.3 102 46.1
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 1.5e-11 74.3 102 46.1
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.5e-11 74.3 102 47.1
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 2.0e-11 73.9 116 43.1
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 2.0e-11 73.9 102 46.1
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 2.6e-11 73.6 73 56.2
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 2.6e-11 73.6 102 46.1
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 3.4e-11 73.2 102 45.1
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 5.9e-11 72.4 103 45.6
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 7.6e-11 72.0 112 42.9
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-10 70.9 137 38.0
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 2.2e-10 70.5 102 44.1
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 2.9e-10 70.1 103 42.7
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 2.9e-10 70.1 106 42.5
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 3.8e-10 69.7 102 45.1
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 5.0e-10 69.3 137 38.0
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 6.5e-10 68.9 104 44.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 8.5e-10 68.6 102 43.1
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.1e-09 68.2 75 56.0
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 1.1e-09 68.2 75 56.0
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.1e-09 68.2 85 45.9
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 1.1e-09 68.2 127 40.9
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 1.1e-09 68.2 102 42.2
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 1.4e-09 67.8 75 54.7
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 1.9e-09 67.4 130 38.5
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 4.2e-09 66.2 102 42.2
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 4.2e-09 66.2 83 50.6
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 4.2e-09 66.2 122 38.5
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 5.5e-09 65.9 73 50.7
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 5.5e-09 65.9 95 44.2
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 9.3e-09 65.1 82 48.8
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 9.3e-09 65.1 101 43.6
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-08 64.3 72 52.8
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.6e-08 64.3 72 52.8
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 4.6e-08 62.8 73 49.3
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 6.1e-08 62.4 102 40.2
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.0e-07 61.6 120 40.0
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 2.3e-07 60.5 67 53.7
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 8.7e-07 58.5 106 37.7
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.5e-06 57.8 56 57.1
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.5e-06 57.8 115 33.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.5e-06 57.0 72 44.4


User provided reference genes

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