Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14550 Brassica carinata HOM05D003860 ORTHO05D004218 1.7e-87 325.9 150 100.0
C02p19970 Brassica napus HOM05D003860 ORTHO05D004218 1.5e-80 302.8 181 80.7
BolC2t08132H Brassica oleracea HOM05D003860 ORTHO05D004218 1.5e-80 302.8 181 80.7
BraA02t06261Z Brassica rapa HOM05D003860 ORTHO05D004218 3.3e-75 285.0 176 77.3
A02p11970 Brassica napus HOM05D003860 ORTHO05D004218 5.4e-70 267.7 166 77.1
BcaC06g31848 Brassica carinata HOM05D003860 ORTHO05D004218 4.9e-63 244.6 176 67.0
SpUn0060_0020 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.1e-59 233.4 176 61.4
BcaB01g04181 Brassica carinata HOM05D003860 ORTHO05D004218 8.6e-52 207.2 176 54.5
BcaC01g06158 Brassica carinata HOM05D003860 ORTHO05D004218 8.6e-52 207.2 175 56.0
BraA03t10876Z Brassica rapa HOM05D003860 ORTHO05D004218 7.3e-51 204.1 175 53.7
Thhalv10014347m.g Eutrema salsugineum HOM05D003860 ORTHO05D004218 6.4e-47 191.0 177 53.1
BcaB01g04182 Brassica carinata HOM05D003860 ORTHO05D004218 9.3e-46 187.2 176 52.3
AT5G42670 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 9.0e-41 170.6 174 48.3
CARHR156760 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.0e-40 169.5 177 47.5
Carub.0008s0633 Capsella rubella HOM05D003860 ORTHO05D004218 5.8e-40 167.9 178 47.2
CARHR265010 Cardamine hirsuta HOM05D003860 ORTHO05D004218 7.6e-40 167.5 171 46.8
Sp2g07130 Schrenkiella parvula HOM05D003860 ORTHO05D004218 1.3e-39 166.8 177 45.2
AL8G18530 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 1.7e-39 166.4 178 47.2
BcaB07g31066 Brassica carinata HOM05D003860 ORTHO05D004218 2.9e-39 165.6 164 50.6
BcaB07g31067 Brassica carinata HOM05D003860 ORTHO05D004218 2.9e-39 165.6 164 50.6
A09p19840 Brassica napus HOM05D003860 ORTHO05D004218 2.1e-37 159.5 180 44.4
AL8G26450 Arabidopsis lyrata HOM05D003860 ORTHO05D004218 4.6e-37 158.3 177 45.8
Aa31LG3G8460 Aethionema arabicum HOM05D003860 ORTHO05D004218 1.8e-36 156.4 202 40.1
BcaC04g21988 Brassica carinata HOM05D003860 ORTHO05D004218 1.8e-36 156.4 173 45.1
C09p25140 Brassica napus HOM05D003860 ORTHO05D004218 1.8e-36 156.4 173 45.1
Sp6g14330 Schrenkiella parvula HOM05D003860 ORTHO05D004218 3.0e-36 155.6 98 69.4
BraA09t37590Z Brassica rapa HOM05D003860 ORTHO05D004218 6.7e-36 154.5 180 43.3
BolC9t55408H Brassica oleracea HOM05D003860 ORTHO05D004218 1.1e-35 153.7 171 45.6
Carub.0008s1217 Capsella rubella HOM05D003860 ORTHO05D004218 3.3e-35 152.1 178 43.8
A03p15860 Brassica napus HOM05D003860 ORTHO05D004218 7.4e-35 151.0 145 48.3
CiPaw.02G115700 Carya illinoinensis HOM05D003860 ORTHO05D004218 9.6e-35 150.6 147 50.3
PGSC0003DMG400017259 Solanum tuberosum HOM05D003860 ORTHO05D004218 8.1e-34 147.5 146 49.3
Solyc09g089570.4 Solanum lycopersicum HOM05D003860 ORTHO05D004218 2.4e-33 146.0 164 44.5
Gohir.D04G018000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 9.0e-33 144.1 172 40.7
Gorai.012G021000 Gossypium raimondii HOM05D003860 ORTHO05D004218 9.0e-33 144.1 172 40.7
C03p18580 Brassica napus HOM05D003860 ORTHO05D004218 3.4e-32 142.1 90 64.4
BolC3t14252H Brassica oleracea HOM05D003860 ORTHO05D004218 3.4e-32 142.1 90 64.4
Cc03_g05000 Coffea canephora HOM05D003860 ORTHO05D004218 5.8e-32 141.4 171 42.1
Sopen09g032490 Solanum pennellii HOM05D003860 ORTHO05D004218 5.8e-32 141.4 161 46.0
PGR004G1248 Punica granatum HOM05D003860 ORTHO05D004218 7.6e-32 141.0 173 43.4
Gohir.A05G398000 Gossypium hirsutum HOM05D003860 ORTHO05D004218 1.3e-31 140.2 172 40.7
THA.LOC104798705 Tarenaya hassleriana HOM05D003860 ORTHO05D004218 1.7e-31 139.8 166 42.8
Potri.008G163500 Populus trichocarpa HOM05D003860 ORTHO05D004218 2.2e-31 139.4 177 39.5
Sc19g0003450 Simmondsia chinensis HOM05D003860 ORTHO05D004218 2.2e-31 139.4 175 42.3
Medtr4g032190 Medicago truncatula HOM05D003860 ORTHO05D004218 2.9e-31 139.0 181 39.2
Sed0002683 Sechium edule HOM05D003860 ORTHO05D004218 2.9e-31 139.0 174 41.4
SalBow6G3557 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.1e-30 137.1 173 39.9
Sabra08G0124700 Salix brachista HOM05D003860 ORTHO05D004218 1.4e-30 136.7 173 38.7
Prupe.1G033500 Prunus persica HOM05D003860 ORTHO05D004218 2.4e-30 136.0 185 38.9
BcaC01g06162 Brassica carinata HOM05D003860 ORTHO05D004218 3.2e-30 135.6 145 46.9
MD16G1211400 Malus domestica HOM05D003860 ORTHO05D004218 4.2e-30 135.2 177 39.5
TPR.G34114 Trifolium pratense HOM05D003860 ORTHO05D004218 5.5e-30 134.8 179 40.2
unitig_32.g10833 Utricularia gibba HOM05D003860 ORTHO05D004218 5.5e-30 134.8 141 43.3
Actinidia05456 Actinidia chinensis HOM05D003860 ORTHO05D004218 7.1e-30 134.4 176 38.6
MELO3C026783.2 Cucumis melo HOM05D003860 ORTHO05D004218 7.1e-30 134.4 175 41.1
Lj3C795G8 Lonicera japonica HOM05D003860 ORTHO05D004218 9.3e-30 134.0 176 40.3
Lj3g0013538 Lotus japonicus HOM05D003860 ORTHO05D004218 9.3e-30 134.0 174 37.9
Dinv29898 Davidia involucrata HOM05D003860 ORTHO05D004218 1.2e-29 133.7 170 40.0
Glyma.12G000500 Glycine max HOM05D003860 ORTHO05D004218 1.2e-29 133.7 172 38.4
Eucgr.H03148 Eucalyptus grandis HOM05D003860 ORTHO05D004218 1.6e-29 133.3 171 41.5
TWI09G0161 Tripterygium wilfordii HOM05D003860 ORTHO05D004218 1.6e-29 133.3 175 41.1
SalBow2G1275 Salvia bowleyana HOM05D003860 ORTHO05D004218 2.1e-29 132.9 177 39.0
Thecc.04G247900 Theobroma cacao HOM05D003860 ORTHO05D004218 2.1e-29 132.9 171 39.2
HPP92_016098 Vanilla planifolia HOM05D003860 ORTHO05D004218 2.1e-29 132.9 173 38.7
CSS0040755 Camellia sinensis var. sinensis HOM05D003860 ORTHO05D004218 3.5e-29 132.1 177 39.5
MBI01_g26745_MAGBIO Magnolia biondii HOM05D003860 ORTHO05D004218 3.5e-29 132.1 175 38.9
Peaxi162Scf00204g00115 Petunia axillaris HOM05D003860 ORTHO05D004218 3.5e-29 132.1 175 40.6
PGSC0003DMG400013397 Solanum tuberosum HOM05D003860 ORTHO05D004218 4.6e-29 131.7 178 40.4
FvH4_3g28990 Fragaria vesca HOM05D003860 ORTHO05D004218 6.0e-29 131.3 184 40.8
Lalb_Chr03g0043921 Lupinus albus HOM05D003860 ORTHO05D004218 1.0e-28 130.6 168 41.1
FAN25G1720 Fragaria x ananassa HOM05D003860 ORTHO05D004218 1.3e-28 130.2 184 39.7
Zm00001eb108590 Zea mays HOM05D003860 ORTHO05D004218 1.3e-28 130.2 177 39.0
Phvul.002G055200 Phaseolus vulgaris HOM05D003860 ORTHO05D004218 1.8e-28 129.8 176 36.9
Psat7g227280 Pisum sativum HOM05D003860 ORTHO05D004218 1.8e-28 129.8 172 37.2
TAR365G0731 Trochodendron aralioides HOM05D003860 ORTHO05D004218 1.8e-28 129.8 171 38.0
RcHm_v2.0_Chr7g0211841 Rosa chinensis HOM05D003860 ORTHO05D004218 2.3e-28 129.4 180 40.0
FAN11G1859 Fragaria x ananassa HOM05D003860 ORTHO05D004218 3.0e-28 129.0 184 40.2
MSTRG.9921 Avicennia marina HOM05D003860 ORTHO05D004218 3.9e-28 128.6 177 39.0
FAN21G0272 Fragaria x ananassa HOM05D003860 ORTHO05D004218 5.1e-28 128.3 184 39.1
Solyc03g005440.3 Solanum lycopersicum HOM05D003860 ORTHO05D004218 5.1e-28 128.3 178 39.9
Sopen03g001470 Solanum pennellii HOM05D003860 ORTHO05D004218 5.1e-28 128.3 178 39.9
GSVIVG01017372001 Vitis vinifera HOM05D003860 ORTHO05D004218 5.1e-28 128.3 173 38.2
RcHm_v2.0_Chr5g0051721 Rosa chinensis HOM05D003860 ORTHO05D004218 6.7e-28 127.9 184 39.1
DCAR_027287 Daucus carota HOM05D003860 ORTHO05D004218 1.1e-27 127.1 174 37.9
arahy.Tifrunner.gnm1.ann1.IPZV7K Arachis hypogaea HOM05D003860 ORTHO05D004218 1.5e-27 126.7 182 36.8
Lsat_1_v5_gn_5_71460 Lactuca sativa HOM05D003860 ORTHO05D004218 2.5e-27 125.9 176 35.8
arahy.Tifrunner.gnm1.ann1.5VC0H5 Arachis hypogaea HOM05D003860 ORTHO05D004218 3.3e-27 125.6 182 36.3
CANSAT78G0297 Cannabis sativa HOM05D003860 ORTHO05D004218 5.6e-27 124.8 177 35.6
CDE02G3490 Ceratophyllum demersum HOM05D003860 ORTHO05D004218 5.6e-27 124.8 172 36.6
ECA233G4435 Erigeron canadensis HOM05D003860 ORTHO05D004218 5.6e-27 124.8 172 36.6
Lsat_1_v5_gn_5_72621 Lactuca sativa HOM05D003860 ORTHO05D004218 5.6e-27 124.8 173 38.2
RcHm_v2.0_Chr4g0391121 Rosa chinensis HOM05D003860 ORTHO05D004218 9.6e-27 124.0 180 38.9
Hund04555 Selenicereus undatus HOM05D003860 ORTHO05D004218 1.3e-26 123.6 170 38.8
Nitab4.5_0000436g0080 Nicotiana tabacum HOM05D003860 ORTHO05D004218 1.6e-26 123.2 179 38.0
GSVIVG01018132001 Vitis vinifera HOM05D003860 ORTHO05D004218 1.6e-26 123.2 172 36.6
Oeu008802.1 Olea europaea HOM05D003860 ORTHO05D004218 3.7e-26 122.1 183 37.7
Aqoxy2G03595 Aquilegia oxysepala HOM05D003860 ORTHO05D004218 1.4e-25 120.2 175 35.4
Nn1g02668 Nelumbo nucifera HOM05D003860 ORTHO05D004218 1.4e-25 120.2 176 39.8
SalBow2G2538 Salvia bowleyana HOM05D003860 ORTHO05D004218 1.4e-25 120.2 202 33.7
vmacro08440 Vaccinium macrocarpon HOM05D003860 ORTHO05D004218 1.8e-25 119.8 175 36.0
CAN.G638.70 Capsicum annuum HOM05D003860 ORTHO05D004218 2.4e-25 119.4 178 35.4
Nitab4.5_0003331g0100 Nicotiana tabacum HOM05D003860 ORTHO05D004218 2.4e-25 119.4 175 38.9
Rhsim04G0189100 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.1e-25 119.0 178 37.1
Atru.chr4.2181 Acer truncatum HOM05D003860 ORTHO05D004218 5.3e-25 118.2 175 36.6
PSO210G3069 Papaver somniferum HOM05D003860 ORTHO05D004218 6.9e-25 117.9 171 36.3
PSO832G4205 Papaver somniferum HOM05D003860 ORTHO05D004218 9.0e-25 117.5 171 35.7
AUR62015467 Chenopodium quinoa HOM05D003860 ORTHO05D004218 1.5e-24 116.7 169 36.1
AT5G52070 Arabidopsis thaliana HOM05D003860 ORTHO05D004218 2.6e-24 115.9 99 52.5
HanXRQChr12g0386161 Helianthus annuus HOM05D003860 ORTHO05D004218 2.6e-24 115.9 179 36.9
Peaxi162Scf00019g03122 Petunia axillaris HOM05D003860 ORTHO05D004218 2.6e-24 115.9 176 38.6
Duzib114G0251 Durio zibethinus HOM05D003860 ORTHO05D004218 4.5e-24 115.2 204 32.8
Lsat_1_v5_gn_5_72601 Lactuca sativa HOM05D003860 ORTHO05D004218 4.5e-24 115.2 173 34.1
QL06p016008 Quercus lobata HOM05D003860 ORTHO05D004218 4.5e-24 115.2 207 31.9
Hund11859 Selenicereus undatus HOM05D003860 ORTHO05D004218 5.8e-24 114.8 171 34.5
PSO386G0262 Papaver somniferum HOM05D003860 ORTHO05D004218 7.6e-24 114.4 173 34.7
HanXRQChr12g0378901 Helianthus annuus HOM05D003860 ORTHO05D004218 1.0e-23 114.0 178 37.6
PSO386G0027 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-23 114.0 179 35.2
PSO724G0326 Papaver somniferum HOM05D003860 ORTHO05D004218 1.0e-23 114.0 177 35.6
Ah.07g207450 Amaranthus hybridus HOM05D003860 ORTHO05D004218 1.7e-23 113.2 172 34.3
PSO724G0870 Papaver somniferum HOM05D003860 ORTHO05D004218 1.7e-23 113.2 173 34.1
PSO063G5549 Papaver somniferum HOM05D003860 ORTHO05D004218 6.5e-23 111.3 172 35.5
AUR62002255 Chenopodium quinoa HOM05D003860 ORTHO05D004218 8.4e-23 110.9 166 36.7
PSO170G3926 Papaver somniferum HOM05D003860 ORTHO05D004218 8.4e-23 110.9 172 36.0
ClCG06G006760 Citrullus lanatus HOM05D003860 ORTHO05D004218 2.1e-21 106.3 72 59.7
PSO675G5794 Papaver somniferum HOM05D003860 ORTHO05D004218 2.7e-21 105.9 174 33.9
Peaxi162Scf00024g00515 Petunia axillaris HOM05D003860 ORTHO05D004218 2.7e-21 105.9 163 36.8
Ca_19732_v3 Cicer arietinum L. HOM05D003860 ORTHO05D004218 3.5e-21 105.5 71 56.3
PGSC0003DMG400005308 Solanum tuberosum HOM05D003860 ORTHO05D004218 1.8e-20 103.2 73 58.9
Nitab4.5_0009720g0020 Nicotiana tabacum HOM05D003860 ORTHO05D004218 3.0e-20 102.4 244 30.7
Rhsim02G0034600 Rhododendron simsii HOM05D003860 ORTHO05D004218 3.0e-20 102.4 245 29.0
ATR0665G258 Amborella trichopoda HOM05D003860 ORTHO05D004218 3.9e-20 102.1 71 59.2
HanXRQChr16g0514681 Helianthus annuus HOM05D003860 ORTHO05D004218 3.9e-20 102.1 167 37.1
Ciclev10005898m.g Citrus clementina HOM05D003860 ORTHO05D004218 6.7e-20 101.3 150 35.3
Mapoly0001s0415 Marchantia polymorpha HOM05D003860 ORTHO05D004218 7.4e-19 97.8 172 32.0
SHI00610 Sapria himalayana HOM05D003860 ORTHO05D004218 7.4e-19 97.8 73 54.8
EL10Ac3g05899 Beta vulgaris HOM05D003860 ORTHO05D004218 1.3e-18 97.1 66 56.1
Mapoly0013s0014 Marchantia polymorpha HOM05D003860 ORTHO05D004218 1.3e-18 97.1 165 32.1
CARHR181580 Cardamine hirsuta HOM05D003860 ORTHO05D004218 2.8e-18 95.9 124 41.9
Manes.03G168100 Manihot esculenta HOM05D003860 ORTHO05D004218 3.7e-18 95.5 66 56.1
SalBow5G0294 Salvia bowleyana HOM05D003860 ORTHO05D004218 3.7e-18 95.5 75 52.0
SGA_v2.0_scaffold101G29803 Striga asiatica HOM05D003860 ORTHO05D004218 1.4e-17 93.6 152 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1422 Anthoceros agrestis HOM05D003860 ORTHO05D004218 2.4e-17 92.8 157 34.4
Zm00001eb417650 Zea mays HOM05D003860 ORTHO05D004218 6.9e-17 91.3 94 42.6
COL.COLO4_20681 Corchorus olitorius HOM05D003860 ORTHO05D004218 1.2e-16 90.5 71 46.5
SEGI_04428 Sequoiadendron giganteum HOM05D003860 ORTHO05D004218 1.2e-16 90.5 81 45.7
Pp3c1_19590 Physcomitrium patens HOM05D003860 ORTHO05D004218 1.5e-16 90.1 181 30.9
Haze_11316 Corylus avellana HOM05D003860 ORTHO05D004218 2.0e-16 89.7 73 54.8
Haze_11318 Corylus avellana HOM05D003860 ORTHO05D004218 2.0e-16 89.7 73 54.8
Lsat_1_v5_gn_7_62061 Lactuca sativa HOM05D003860 ORTHO05D004218 3.4e-16 89.0 88 47.7
Peaxi162Scf01247g00111 Petunia axillaris HOM05D003860 ORTHO05D004218 2.2e-15 86.3 73 49.3
Os05g0140600 Oryza sativa ssp. japonica HOM05D003860 ORTHO05D004218 1.6e-13 80.1 72 47.2
C03p18530 Brassica napus HOM05D003860 ORTHO05D004218 7.9e-13 77.8 93 41.9
BolC3t14250H Brassica oleracea HOM05D003860 ORTHO05D004218 7.9e-13 77.8 93 41.9
SMO358G0545 Selaginella moellendorffii HOM05D003860 ORTHO05D004218 2.3e-12 76.3 141 31.2
Pp3c23_3470 Physcomitrium patens HOM05D003141 ORTHO05D000421 9.7e-11 70.9 171 29.2
BolC3t14251H Brassica oleracea HOM05D003860 ORTHO05D004218 2.8e-10 69.3 43 69.8
Lsat_1_v5_gn_2_69300 Lactuca sativa HOM05D003860 ORTHO05D004218 4.8e-10 68.6 81 44.4
CBR_g50140 Chara braunii HOM05D003860 ORTHO05D004218 1.1e-09 67.4 138 31.2
Pp3c20_13300 Physcomitrium patens HOM05D003141 ORTHO05D000421 2.0e-08 63.2 176 30.1
unitig_26.g9551 Utricularia gibba HOM05D000621 ORTHO05D000421 2.6e-08 62.8 140 30.0
Pp3c20_13303 Physcomitrium patens HOM05D003141 ORTHO05D000421 4.5e-08 62.0 179 29.6
Cpa.g.sc126.46 Carica papaya HOM05D003860 ORTHO05D004218 5.0e-07 58.5 38 55.3
Carub.0008s1597 Capsella rubella HOM05D001580 ORTHO05D001517 8.5e-07 57.8 144 26.4
Nn1g00964 Nelumbo nucifera HOM05D003141 ORTHO05D003633 8.5e-07 57.8 177 26.6
AagrBONN_evm.TU.Sc2ySwM_117.2824 Anthoceros agrestis HOM05D003860 ORTHO05D004218 1.9e-06 56.6 73 34.2
C03p18540 Brassica napus HOM05D003860 ORTHO05D004218 2.5e-06 56.2 31 77.4
arahy.Tifrunner.gnm1.ann1.MEP28M Arachis hypogaea HOM05D000621 ORTHO05D000421 3.2e-06 55.8 159 25.8
VMungo0251G0597 Vigna mungo HOM05D003860 ORTHO05D004218 3.2e-06 55.8 36 61.1
PSO210G6820 Papaver somniferum HOM05D000621 ORTHO05D000421 4.2e-06 55.5 156 29.5
BcaNung06725 Brassica carinata HOM05D001580 ORTHO05D001517 5.5e-06 55.1 136 30.1
Hma1.2p1_0372F.1_g138410 Hydrangea macrophylla HOM05D001580 ORTHO05D001517 5.5e-06 55.1 125 29.6


User provided reference genes

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