Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14385 Brassica carinata HOM05D002873 ORTHO05D002978 6.3e-26 120.2 68 100.0
C02p17950 Brassica napus HOM05D002873 ORTHO05D002978 6.3e-26 120.2 68 100.0
BolC2t07926H Brassica oleracea HOM05D002873 ORTHO05D002978 6.3e-26 120.2 68 100.0
A02p10830 Brassica napus HOM05D002873 ORTHO05D002978 2.4e-25 118.2 68 98.5
BraA02t06145Z Brassica rapa HOM05D002873 ORTHO05D002978 2.4e-25 118.2 68 98.5
THA.LOC109117084 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 1.6e-16 89.0 68 72.1
Carub.0008s1411 Capsella rubella HOM05D002873 ORTHO05D002978 4.5e-16 87.4 68 75.0
BraA10t43210Z Brassica rapa HOM05D002873 ORTHO05D002978 3.8e-15 84.3 68 75.0
A10p11190 Brassica napus HOM05D002873 ORTHO05D002978 6.5e-15 83.6 68 75.0
TWI34G1371 Tripterygium wilfordii HOM05D002873 ORTHO05D002978 1.9e-14 82.0 68 61.8
C09p43800 Brassica napus HOM05D002873 ORTHO05D002978 4.2e-14 80.9 68 72.1
BolC9t57265H Brassica oleracea HOM05D002873 ORTHO05D002978 4.2e-14 80.9 68 72.1
Thhalv10015216m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 4.2e-14 80.9 68 70.6
AT5G53820 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 1.2e-13 79.3 68 69.1
BcaB08g35740 Brassica carinata HOM05D002873 ORTHO05D002978 2.1e-13 78.6 68 70.6
BNapus_Darmor_BZH_scaffold_122p00010 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-13 78.6 65 64.6
BNapus_Darmor_BZH_scaffold_99p00020 Brassica napus HOM05D002873 ORTHO05D002978 2.1e-13 78.6 65 64.6
BolC1t05900H Brassica oleracea HOM05D002873 ORTHO05D002978 2.1e-13 78.6 65 64.6
Sopen02g034300 Solanum pennellii HOM05D002873 ORTHO05D002978 2.1e-13 78.6 66 65.2
BcaC09g47705 Brassica carinata HOM05D002873 ORTHO05D002978 4.7e-13 77.4 65 63.1
BNapus_Darmor_BZH_scaffold_208p00010 Brassica napus HOM05D002873 ORTHO05D002978 4.7e-13 77.4 65 63.1
BolC1t05901H Brassica oleracea HOM05D002873 ORTHO05D002978 4.7e-13 77.4 65 63.1
BraSC141t45633Z Brassica rapa HOM05D002873 ORTHO05D002978 4.7e-13 77.4 65 63.1
Ca_06717_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 8.0e-13 76.6 62 64.5
Haze_14075 Corylus avellana HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 58.8
Lalb_Chr04g0258251 Lupinus albus HOM05D002873 ORTHO05D002978 8.0e-13 76.6 64 62.5
Prupe.3G244200 Prunus persica HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 58.8
Prupe.3G244300 Prunus persica HOM05D002873 ORTHO05D002978 8.0e-13 76.6 68 58.8
AL8G28870 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.0e-12 76.3 68 67.6
CARHR288730 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.0e-12 76.3 61 68.9
CsaV3_5G004620 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.0e-12 76.3 68 60.3
Prupe.3G244600 Prunus persica HOM05D002873 ORTHO05D002978 1.4e-12 75.9 68 58.8
Haze_17643 Corylus avellana HOM05D002873 ORTHO05D002978 1.8e-12 75.5 66 62.1
Prupe.3G244100 Prunus persica HOM05D002873 ORTHO05D002978 1.8e-12 75.5 68 57.4
arahy.Tifrunner.gnm1.ann1.4T36CH Arachis hypogaea HOM05D002873 ORTHO05D002978 2.3e-12 75.1 65 63.1
arahy.Tifrunner.gnm1.ann1.JTM1YJ Arachis hypogaea HOM05D002873 ORTHO05D002978 2.3e-12 75.1 65 63.1
Carub.0003s0158 Capsella rubella HOM05D002873 ORTHO05D002978 2.3e-12 75.1 65 58.5
Prupe.3G244500 Prunus persica HOM05D002873 ORTHO05D002978 2.3e-12 75.1 68 57.4
Cpa.g.sc188.26 Carica papaya HOM05D002873 ORTHO05D002978 4.0e-12 74.3 66 62.1
Sed0008680 Sechium edule HOM05D002873 ORTHO05D002978 5.2e-12 73.9 68 58.8
Prupe.3G244400 Prunus persica HOM05D002873 ORTHO05D002978 6.8e-12 73.6 68 55.9
AL3G11800 Arabidopsis lyrata HOM05D002873 ORTHO05D002978 1.2e-11 72.8 65 56.9
CARHR266960 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.5e-11 72.4 68 64.7
Cfa020560 Carpinus fangiana HOM05D002873 ORTHO05D002978 1.5e-11 72.4 66 60.6
RcHm_v2.0_Chr2g0163991 Rosa chinensis HOM05D002873 ORTHO05D002978 2.6e-11 71.6 66 57.6
Migut.H00555 Erythranthe guttata HOM05D002873 ORTHO05D002978 3.4e-11 71.2 60 60.0
Phvul.004G047300 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 3.4e-11 71.2 63 60.3
Sed0026183 Sechium edule HOM05D002873 ORTHO05D002978 3.4e-11 71.2 68 60.3
A03p32950 Brassica napus HOM05D002873 ORTHO05D002978 4.4e-11 70.9 67 55.2
BraA03t12463Z Brassica rapa HOM05D002873 ORTHO05D002978 4.4e-11 70.9 67 55.2
Sp6g15890 Schrenkiella parvula HOM05D002873 ORTHO05D002978 1.3e-10 69.3 62 67.7
Aa31LG5G10000 Aethionema arabicum HOM05D002873 ORTHO05D002978 1.7e-10 68.9 70 60.0
BcaC01g04444 Brassica carinata HOM05D002873 ORTHO05D002978 1.7e-10 68.9 67 53.7
C03p40070 Brassica napus HOM05D002873 ORTHO05D002978 1.7e-10 68.9 67 53.7
BolC3t16273H Brassica oleracea HOM05D002873 ORTHO05D002978 1.7e-10 68.9 67 53.7
THA.LOC109116088 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 2.2e-10 68.6 68 55.9
AT3G02480 Arabidopsis thaliana HOM05D002873 ORTHO05D002978 2.8e-10 68.2 65 55.4
CsaV3_5G038880 Cucumis sativus L. HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 57.4
Eucgr.I02095 Eucalyptus grandis HOM05D002873 ORTHO05D002978 2.8e-10 68.2 68 55.9
FAN02G0494 Fragaria x ananassa HOM05D002873 ORTHO05D002978 2.8e-10 68.2 65 56.9
Prupe.3G244700 Prunus persica HOM05D002873 ORTHO05D002978 2.8e-10 68.2 67 53.7
Sc11g0008050 Simmondsia chinensis HOM05D002873 ORTHO05D002978 2.8e-10 68.2 66 59.1
Aqoxy6G00630 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 3.7e-10 67.8 66 57.6
Nitab4.5_0006224g0060 Nicotiana tabacum HOM05D002873 ORTHO05D002978 3.7e-10 67.8 63 58.7
Dinv38615 Davidia involucrata HOM05D002873 ORTHO05D002978 4.8e-10 67.4 61 57.4
Dinv33894 Davidia involucrata HOM05D002873 ORTHO05D002978 6.3e-10 67.0 66 53.0
Thhalv10028020m.g Eutrema salsugineum HOM05D002873 ORTHO05D002978 6.3e-10 67.0 68 60.3
Sopen02g027770 Solanum pennellii HOM05D002873 ORTHO05D002978 6.3e-10 67.0 66 57.6
PGSC0003DMG400001534 Solanum tuberosum HOM05D002873 ORTHO05D002978 8.3e-10 66.6 66 57.6
THA.LOC109116986 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 8.3e-10 66.6 67 55.2
GSVIVG01036492001 Vitis vinifera HOM05D002873 ORTHO05D002978 8.3e-10 66.6 66 54.5
Aqoxy6G02621 Aquilegia oxysepala HOM05D002873 ORTHO05D002978 1.4e-09 65.9 66 54.5
MD09G1079600 Malus domestica HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 52.9
Solyc02g082990.4 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.8e-09 65.5 68 55.9
Actinidia26314 Actinidia chinensis HOM05D002873 ORTHO05D002978 2.4e-09 65.1 66 56.1
Sed0018450 Sechium edule HOM05D002873 ORTHO05D002978 4.1e-09 64.3 68 54.4
Nitab4.5_0006524g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 5.4e-09 63.9 70 52.9
AUR62008938 Chenopodium quinoa HOM05D002873 ORTHO05D002978 7.0e-09 63.5 88 46.6
MELO3C022078.2 Cucumis melo HOM05D002873 ORTHO05D002978 7.0e-09 63.5 68 54.4
Dinv36852 Davidia involucrata HOM05D002873 ORTHO05D002978 7.0e-09 63.5 67 52.2
Psat3g191840 Pisum sativum HOM05D002873 ORTHO05D002978 7.0e-09 63.5 60 60.0
Peaxi162Scf00479g00055 Petunia axillaris HOM05D002873 ORTHO05D002978 9.1e-09 63.2 66 54.5
Sed0011149 Sechium edule HOM05D002873 ORTHO05D002978 9.1e-09 63.2 72 52.8
CsaV3_5G004610 Cucumis sativus L. HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 51.5
Potri.017G108400 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.2e-08 62.8 68 54.4
Cpa.g.sc188.25 Carica papaya HOM05D002873 ORTHO05D002978 2.0e-08 62.0 66 53.0
Medtr7g020780 Medicago truncatula HOM05D002873 ORTHO05D002978 4.5e-08 60.8 66 54.5
Potri.004G106350 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.9e-08 60.5 60 60.0
Hund13793 Selenicereus undatus HOM05D002873 ORTHO05D002978 5.9e-08 60.5 68 52.9
Dinv34873 Davidia involucrata HOM05D002873 ORTHO05D002978 7.7e-08 60.1 68 52.9
THA.LOC109116670 Tarenaya hassleriana HOM05D002873 ORTHO05D002978 7.7e-08 60.1 46 69.6
Peaxi162Scf00479g00423 Petunia axillaris HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 53.0
Sc10g0001460 Simmondsia chinensis HOM05D002873 ORTHO05D002978 1.0e-07 59.7 41 80.5
Solyc02g089570.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 1.0e-07 59.7 66 54.5
Sed0018699 Sechium edule HOM05D002873 ORTHO05D002978 1.3e-07 59.3 68 51.5
Actinidia18105 Actinidia chinensis HOM05D002873 ORTHO05D002978 1.7e-07 58.9 66 50.0
CARHR076460 Cardamine hirsuta HOM05D002873 ORTHO05D002978 1.7e-07 58.9 67 46.3
Glyma.08G255700 Glycine max HOM05D002873 ORTHO05D002978 1.7e-07 58.9 62 50.0
Glyma.19G040000 Glycine max HOM05D002873 ORTHO05D002978 1.7e-07 58.9 61 55.7
Dinv33895 Davidia involucrata HOM05D002873 ORTHO05D002978 2.3e-07 58.5 66 48.5
RcHm_v2.0_Chr2g0164011 Rosa chinensis HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 48.5
Sabra04G0074600 Salix brachista HOM05D002873 ORTHO05D002978 2.3e-07 58.5 68 51.5
Sc11g0008060 Simmondsia chinensis HOM05D002873 ORTHO05D002978 2.9e-07 58.2 65 52.3
FAN05G4367 Fragaria x ananassa HOM05D002873 ORTHO05D002978 3.8e-07 57.8 66 53.0
PGR042G3018 Punica granatum HOM05D002873 ORTHO05D002978 3.8e-07 57.8 68 51.5
Potri.017G108300 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 50.0
Potri.017G108350 Populus trichocarpa HOM05D002873 ORTHO05D002978 5.0e-07 57.4 68 50.0
MELO3C005500.2 Cucumis melo HOM05D002873 ORTHO05D002978 8.6e-07 56.6 68 48.5
Solyc02g065640.3 Solanum lycopersicum HOM05D002873 ORTHO05D002978 8.6e-07 56.6 66 50.0
Thecc.04G146000 Theobroma cacao HOM05D002873 ORTHO05D002978 1.1e-06 56.2 68 50.0
Migut.H00561 Erythranthe guttata HOM05D002873 ORTHO05D002978 1.5e-06 55.8 66 48.5
Potri.017G108500 Populus trichocarpa HOM05D002873 ORTHO05D002978 1.9e-06 55.5 92 41.3
Lj1g0022638 Lotus japonicus HOM05D002873 ORTHO05D002978 2.5e-06 55.1 63 50.8
Medtr7g019290 Medicago truncatula HOM05D002873 ORTHO05D002978 2.5e-06 55.1 68 54.4
Ca_20748_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 3.3e-06 54.7 65 49.2
Lalb_Chr17g0336681 Lupinus albus HOM05D002873 ORTHO05D002978 3.3e-06 54.7 40 75.0
C09p61100 Brassica napus HOM05D010783 ORTHO05D013000 4.2e-06 54.3 68 50.0
BolC9t58953H Brassica oleracea HOM05D010783 ORTHO05D013000 4.2e-06 54.3 68 50.0
Ca_06720_v3 Cicer arietinum L. HOM05D002873 ORTHO05D002978 4.2e-06 54.3 70 55.7
HanXRQChr14g0448071 Helianthus annuus HOM05D002873 ORTHO05D002978 4.2e-06 54.3 65 44.6
Lsat_1_v5_gn_2_86260 Lactuca sativa HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 50.0
Peaxi162Scf01056g00020 Petunia axillaris HOM05D002873 ORTHO05D002978 4.2e-06 54.3 66 51.5
Phvul.008G022400 Phaseolus vulgaris HOM05D002873 ORTHO05D002978 4.2e-06 54.3 45 62.2
Sabra04G0075800 Salix brachista HOM05D002873 ORTHO05D002978 4.2e-06 54.3 92 44.6
PSO478G1110 Papaver somniferum HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 45.6
Sabra04G0074500 Salix brachista HOM05D002873 ORTHO05D002978 5.5e-06 53.9 68 47.1
FvH4_6g45800 Fragaria vesca HOM05D002873 ORTHO05D002978 7.2e-06 53.5 43 67.4
FAN09G4276 Fragaria x ananassa HOM05D002873 ORTHO05D002978 7.2e-06 53.5 43 67.4
FAN14G0065 Fragaria x ananassa HOM05D003981 ORTHO05D003666 7.2e-06 53.5 43 67.4
MD17G1070100 Malus domestica HOM05D002873 ORTHO05D002978 7.2e-06 53.5 68 47.1
Cfa007988 Carpinus fangiana HOM05D002873 ORTHO05D002978 9.5e-06 53.1 89 41.6
Cc00_g21590 Coffea canephora HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 50.0
Glyma.18G278600 Glycine max HOM05D002873 ORTHO05D002978 9.5e-06 53.1 62 48.4
Nitab4.5_0015566g0010 Nicotiana tabacum HOM05D002873 ORTHO05D002978 9.5e-06 53.1 66 50.0


User provided reference genes

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