Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC03g14354 Brassica carinata HOM05D006017 ORTHO05D007821 4.2e-283 977.2 459 100.0
BolC2t07897H Brassica oleracea HOM05D006017 ORTHO05D007821 9.4e-283 976.1 459 99.8
C02p17670 Brassica napus HOM05D006017 ORTHO05D007821 1.5e-280 968.8 459 99.3
BcaB05g22107 Brassica carinata HOM05D006017 ORTHO05D007821 3.8e-276 954.1 459 96.7
A02p10590 Brassica napus HOM05D006017 ORTHO05D007821 3.2e-275 951.0 452 98.0
BraA02t06124Z Brassica rapa HOM05D006017 ORTHO05D007821 3.2e-275 951.0 452 98.0
Sp6g16110 Schrenkiella parvula HOM05D006017 ORTHO05D007821 4.1e-270 934.1 459 94.3
Aa31LG3G9950 Aethionema arabicum HOM05D006017 ORTHO05D007821 4.4e-264 914.1 453 92.7
Carub.0008s1436 Capsella rubella HOM05D006017 ORTHO05D007821 7.5e-264 913.3 455 93.0
AL8G29200 Arabidopsis lyrata HOM05D006017 ORTHO05D007821 1.3e-263 912.5 457 92.6
CARHR267270 Cardamine hirsuta HOM05D006017 ORTHO05D007821 5.4e-262 907.1 457 92.6
AT5G54080 Arabidopsis thaliana HOM05D006017 ORTHO05D007821 1.2e-261 906.0 457 91.9
THA.LOC104811882 Tarenaya hassleriana HOM05D006017 ORTHO05D007821 5.8e-248 860.5 457 86.2
Cpa.g.sc131.80 Carica papaya HOM05D006017 ORTHO05D007821 3.0e-236 821.6 433 85.7
Hma1.2p1_0416F.1_g148570 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 2.3e-233 812.0 452 82.5
Sopen12g005880 Solanum pennellii HOM05D006017 ORTHO05D007821 1.2e-232 809.7 448 80.8
PGSC0003DMG400015330 Solanum tuberosum HOM05D006017 ORTHO05D007821 5.8e-232 807.4 448 80.8
Solyc12g014100.2 Solanum lycopersicum HOM05D006017 ORTHO05D007821 1.3e-231 806.2 448 80.4
TWI38G0439 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 2.9e-231 805.1 451 82.3
Thecc.07G102400 Theobroma cacao HOM05D006017 ORTHO05D007821 5.4e-230 800.8 432 84.5
Atru.chr2.2344 Acer truncatum HOM05D006017 ORTHO05D007821 7.1e-230 800.4 450 80.7
Rhsim04G0023700 Rhododendron simsii HOM05D006017 ORTHO05D007821 7.1e-230 800.4 438 83.1
MSTRG.14945 Avicennia marina HOM05D006017 ORTHO05D007821 1.2e-229 799.7 433 83.1
Thhalv10013691m.g Eutrema salsugineum HOM05D006017 ORTHO05D007821 2.7e-229 798.5 459 83.7
ClCG07G009900 Citrullus lanatus HOM05D006017 ORTHO05D007821 3.5e-229 798.1 450 81.1
Gorai.002G065000 Gossypium raimondii HOM05D006017 ORTHO05D007821 3.5e-229 798.1 448 81.0
Dinv14956 Davidia involucrata HOM05D006017 ORTHO05D007821 7.8e-229 797.0 448 81.0
Peaxi162Scf00000g00262 Petunia axillaris HOM05D006017 ORTHO05D007821 1.0e-228 796.6 439 82.2
Gohir.A01G059400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 1.7e-228 795.8 448 81.0
Gohir.D01G045400 Gossypium hirsutum HOM05D006017 ORTHO05D007821 5.1e-228 794.3 448 80.6
Manes.03G103900 Manihot esculenta HOM05D006017 ORTHO05D007821 1.1e-227 793.1 432 83.1
vmacro09508 Vaccinium macrocarpon HOM05D006017 ORTHO05D007821 1.5e-227 792.7 465 78.1
Actinidia18784 Actinidia chinensis HOM05D006017 ORTHO05D007821 2.5e-227 792.0 450 80.4
CSS0036883 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.3e-227 791.6 452 80.1
FAN16G2700 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.3e-227 791.6 436 81.9
Cfa019614 Carpinus fangiana HOM05D006017 ORTHO05D007821 4.3e-227 791.2 452 80.1
CsaV3_4G008430 Cucumis sativus L. HOM05D006017 ORTHO05D007821 1.2e-226 789.6 452 79.6
FAN11G3087 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.2e-226 789.6 432 82.6
Lsat_1_v5_gn_9_98620 Lactuca sativa HOM05D006017 ORTHO05D007821 1.6e-226 789.3 449 79.7
RcHm_v2.0_Chr5g0031821 Rosa chinensis HOM05D006017 ORTHO05D007821 2.1e-226 788.9 433 81.5
Sc03g0010290 Simmondsia chinensis HOM05D006017 ORTHO05D007821 2.1e-226 788.9 439 81.5
Prupe.4G172100 Prunus persica HOM05D006017 ORTHO05D007821 3.6e-226 788.1 451 78.7
CiPaw.12G115700 Carya illinoinensis HOM05D006017 ORTHO05D007821 8.1e-226 786.9 441 80.3
MELO3C016089.2 Cucumis melo HOM05D006017 ORTHO05D007821 1.1e-225 786.6 450 80.0
MBI07_g06432_MAGBIO Magnolia biondii HOM05D006017 ORTHO05D007821 1.4e-225 786.2 433 81.8
CANSAT35G1773 Cannabis sativa HOM05D006017 ORTHO05D007821 3.1e-225 785.0 433 82.7
Haze_09368 Corylus avellana HOM05D006017 ORTHO05D007821 3.1e-225 785.0 470 78.1
PSO541G6385 Papaver somniferum HOM05D006017 ORTHO05D007821 3.1e-225 785.0 448 79.7
Sed0020976 Sechium edule HOM05D006017 ORTHO05D007821 3.1e-225 785.0 450 79.8
Migut.M00760 Erythranthe guttata HOM05D006017 ORTHO05D007821 4.0e-225 784.6 448 79.9
Eucgr.F01184 Eucalyptus grandis HOM05D006017 ORTHO05D007821 4.0e-225 784.6 437 81.7
Cc05_g11510 Coffea canephora HOM05D006017 ORTHO05D007821 5.2e-225 784.3 448 79.5
GSVIVG01014248001 Vitis vinifera HOM05D006017 ORTHO05D007821 1.2e-224 783.1 434 82.0
ECA240G4517 Erigeron canadensis HOM05D006017 ORTHO05D007821 1.5e-224 782.7 447 79.6
HanXRQChr03g0070991 Helianthus annuus HOM05D006017 ORTHO05D007821 1.5e-224 782.7 451 79.6
DCAR_028453 Daucus carota HOM05D006017 ORTHO05D007821 2.6e-224 781.9 444 79.7
Eucgr.F01185 Eucalyptus grandis HOM05D006017 ORTHO05D007821 2.6e-224 781.9 437 81.5
PGR083G0123 Punica granatum HOM05D006017 ORTHO05D007821 2.6e-224 781.9 433 82.7
Lj8A152T86 Lonicera japonica HOM05D006017 ORTHO05D007821 4.4e-224 781.2 451 79.8
EL10Ac4g08290 Beta vulgaris HOM05D006017 ORTHO05D007821 7.6e-224 780.4 434 81.3
Lj3g0015312 Lotus japonicus HOM05D006017 ORTHO05D007821 1.9e-222 775.8 432 81.5
CAN.G739.4 Capsicum annuum HOM05D006017 ORTHO05D007821 2.4e-222 775.4 471 75.6
QL08p027671 Quercus lobata HOM05D006017 ORTHO05D007821 3.2e-222 775.0 437 80.3
Aqoxy1G02214 Aquilegia oxysepala HOM05D006017 ORTHO05D007821 4.2e-222 774.6 452 77.4
CiPaw.11G165400 Carya illinoinensis HOM05D006017 ORTHO05D007821 5.4e-222 774.2 431 80.7
PSO675G4947 Papaver somniferum HOM05D006017 ORTHO05D007821 4.6e-221 771.2 440 79.5
AUR62019513 Chenopodium quinoa HOM05D006017 ORTHO05D007821 7.8e-221 770.4 438 79.9
Medtr8g463280 Medicago truncatula HOM05D006017 ORTHO05D007821 7.8e-221 770.4 432 80.3
ATR0749G089 Amborella trichopoda HOM05D006017 ORTHO05D007821 6.6e-220 767.3 434 79.5
Psat4g138640 Pisum sativum HOM05D006017 ORTHO05D007821 1.5e-219 766.1 432 81.0
Ca_23058_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-219 765.8 448 78.6
Ca_30664_v3 Cicer arietinum L. HOM05D006017 ORTHO05D007821 1.9e-219 765.8 448 78.6
arahy.Tifrunner.gnm1.ann1.DSNA77 Arachis hypogaea HOM05D006017 ORTHO05D007821 3.3e-219 765.0 435 78.9
FAN21G1753 Fragaria x ananassa HOM05D006017 ORTHO05D007821 3.3e-219 765.0 465 75.9
Phvul.011G148800 Phaseolus vulgaris HOM05D006017 ORTHO05D007821 5.6e-219 764.2 432 79.9
Glyma.12G158600 Glycine max HOM05D006017 ORTHO05D007821 7.3e-219 763.8 429 81.4
Lalb_Chr03g0030841 Lupinus albus HOM05D006017 ORTHO05D007821 7.3e-219 763.8 441 78.5
arahy.Tifrunner.gnm1.ann1.FV2XB3 Arachis hypogaea HOM05D006017 ORTHO05D007821 2.8e-218 761.9 435 78.9
VMungo1127G0952 Vigna mungo HOM05D006017 ORTHO05D007821 6.2e-218 760.8 432 79.9
Potri.001G374100 Populus trichocarpa HOM05D006017 ORTHO05D007821 8.1e-218 760.4 436 80.3
Oeu061327.1 Olea europaea HOM05D006017 ORTHO05D007821 6.9e-217 757.3 469 74.0
Oeu061328.1 Olea europaea HOM05D006017 ORTHO05D007821 6.9e-217 757.3 469 74.0
Sabra16G0246500 Salix brachista HOM05D006017 ORTHO05D007821 1.9e-214 749.2 440 78.4
Nitab4.5_0003077g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 4.2e-214 748.0 468 74.6
Os06g0103300 Oryza sativa ssp. japonica HOM05D006017 ORTHO05D007821 3.5e-213 745.0 447 77.9
AUR62036125 Chenopodium quinoa HOM05D006017 ORTHO05D007821 4.6e-213 744.6 441 77.6
HPP92_003902 Vanilla planifolia HOM05D006017 ORTHO05D007821 1.3e-210 736.5 438 74.9
unitig_46.g18314 Utricularia gibba HOM05D006017 ORTHO05D007821 1.8e-209 732.6 439 76.1
Zm00001eb379510 Zea mays HOM05D006017 ORTHO05D007821 4.5e-208 728.0 446 76.5
Ciclev10008509m.g Citrus clementina HOM05D006017 ORTHO05D007821 7.1e-206 720.7 384 85.4
SGA_v2.0_scaffold73G24213 Striga asiatica HOM05D006017 ORTHO05D007821 1.2e-205 719.9 492 70.5
Ah.04g164440 Amaranthus hybridus HOM05D006017 ORTHO05D007821 5.6e-203 711.1 447 74.3
Nn1g04303 Nelumbo nucifera HOM05D006017 ORTHO05D007821 4.0e-201 704.9 378 84.1
CDE02G3882 Ceratophyllum demersum HOM05D006017 ORTHO05D007821 4.5e-200 701.4 449 72.2
Mapoly0078s0002 Marchantia polymorpha HOM05D006017 ORTHO05D007821 4.8e-194 681.4 438 70.8
Hund22764 Selenicereus undatus HOM05D006017 ORTHO05D007821 1.1e-193 680.2 397 78.3
AagrBONN_evm.TU.Sc2ySwM_228.2578 Anthoceros agrestis HOM05D006017 ORTHO05D007821 6.1e-189 664.5 424 69.8
Pp3c16_940 Physcomitrium patens HOM05D006017 ORTHO05D007821 7.4e-187 657.5 438 68.5
Duzib170G0488 Durio zibethinus HOM05D006017 ORTHO05D007821 1.2e-181 640.2 452 68.8
Nitab4.5_0005445g0020 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.8e-172 609.8 415 69.4
SMO119G0176 Selaginella moellendorffii HOM05D006017 ORTHO05D007821 1.1e-171 607.1 433 64.7
FvH4_3g19020 Fragaria vesca HOM05D006017 ORTHO05D007821 7.0e-161 571.2 320 80.0
Hma1.2p1_0416F.1_g148580 Hydrangea macrophylla HOM05D006017 ORTHO05D007821 1.7e-159 566.6 311 82.6
Cre02.g091200 Chlamydomonas reinhardtii HOM05D006017 ORTHO05D007821 8.5e-159 564.3 443 61.6
SalBow8G4076 Salvia bowleyana HOM05D006017 ORTHO05D007821 2.8e-154 549.3 304 81.6
PRCOL_00000185 Prasinoderma coloniale HOM05D006017 ORTHO05D007821 1.3e-151 540.4 457 59.1
TPR.G22540 Trifolium pratense HOM05D006017 ORTHO05D007821 8.5e-151 537.7 376 68.9
MD03G1237500 Malus domestica HOM05D006017 ORTHO05D007821 4.1e-145 518.8 296 79.7
Glyma.06G234200 Glycine max HOM05D006017 ORTHO05D007821 8.6e-127 458.0 276 76.1
BcaC04g20394 Brassica carinata HOM05D006017 ORTHO05D007821 1.3e-93 347.8 434 50.7
C09p44170 Brassica napus HOM05D006017 ORTHO05D017343 3.3e-78 296.6 302 56.6
CSS0003418 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 2.2e-77 293.9 196 71.9
MD03G1237300 Malus domestica HOM05D006017 ORTHO05D007821 3.0e-71 273.5 159 78.0
FAN25G2436 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.8e-68 264.2 132 88.6
SEGI_01915 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 4.5e-67 259.6 205 60.0
Oeu061326.1 Olea europaea HOM05D006017 ORTHO05D007821 7.4e-62 242.3 133 82.7
Rhsim07G0153900 Rhododendron simsii HOM05D006017 ORTHO05D000252 8.2e-61 238.8 237 53.2
Glyma.06G234050 Glycine max HOM05D006017 ORTHO05D007821 1.5e-59 234.6 133 79.7
TAR436G0001 Trochodendron aralioides HOM05D006017 ORTHO05D007821 7.7e-59 232.3 132 78.8
Nitab4.5_0004022g0010 Nicotiana tabacum HOM05D006017 ORTHO05D007821 1.2e-56 224.9 120 85.8
A10p11370 Brassica napus HOM05D006017 ORTHO05D007821 5.5e-49 199.5 249 49.4
CSS0021316 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 7.5e-46 189.1 114 70.2
TWI38G1497 Tripterygium wilfordii HOM05D006017 ORTHO05D007821 4.8e-45 186.4 119 72.3
BolC9t57289H Brassica oleracea HOM05D006017 ORTHO05D104628 2.7e-35 154.1 182 50.5
SEGI_25954 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 9.8e-30 135.6 100 64.0
FAN25G2983 Fragaria x ananassa HOM05D006017 ORTHO05D007821 1.0e-23 115.5 90 58.9
arahy.Tifrunner.gnm1.ann1.EZ2Q4B Arachis hypogaea HOM05D006004 ORTHO05D006976 6.4e-21 106.3 61 75.4
SEGI_23248 Sequoiadendron giganteum HOM05D006017 ORTHO05D007821 6.4e-21 106.3 84 59.5
TWI38G0821 Tripterygium wilfordii HOM05D006017 ORTHO05D413584 3.5e-19 100.5 55 76.4
CSS0031230 Camellia sinensis var. sinensis HOM05D006017 ORTHO05D007821 3.9e-18 97.1 103 47.6
BraA10t43231Z Brassica rapa HOM05D006017 ORTHO05D017343 1.6e-16 91.7 68 63.2
HPP92_003866 Vanilla planifolia HOM05D006017 ORTHO05D007821 3.3e-09 67.4 54 61.1
Mapoly0432s0001 Marchantia polymorpha HOM05D019566 ORTHO05D017343 3.6e-08 63.9 43 65.1


User provided reference genes

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