Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12414 Brassica carinata HOM05D004152 ORTHO05D004878 1.3e-140 503.1 259 100.0
C04p04150 Brassica napus HOM05D004152 ORTHO05D004878 7.2e-139 497.3 259 98.1
BolC4t22055H Brassica oleracea HOM05D004152 ORTHO05D004878 7.2e-139 497.3 259 98.1
A05p03590 Brassica napus HOM05D004152 ORTHO05D004878 1.6e-130 469.5 259 93.8
BraA05t19345Z Brassica rapa HOM05D004152 ORTHO05D004878 1.0e-129 466.8 259 93.4
BcaNung03539 Brassica carinata HOM05D004152 ORTHO05D004878 3.3e-123 445.3 259 90.3
Thhalv10017125m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 2.2e-119 432.6 254 88.6
Sp4g25230 Schrenkiella parvula HOM05D004152 ORTHO05D004878 1.1e-118 430.3 254 87.8
CARHR138170 Cardamine hirsuta HOM05D004152 ORTHO05D004878 4.7e-106 388.3 263 80.6
AL4G41750 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 3.2e-102 375.6 256 78.9
AT2G43100 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 9.2e-102 374.0 256 77.0
Carub.0004s2558 Capsella rubella HOM05D004152 ORTHO05D004878 1.1e-99 367.1 256 75.8
Aa31LG1G24910 Aethionema arabicum HOM05D004152 ORTHO05D004878 7.3e-99 364.4 260 76.5
AL5G40810 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 4.5e-80 302.0 255 64.7
BraA05t19344Z Brassica rapa HOM05D004152 ORTHO05D004878 9.9e-80 300.8 252 64.7
Aa31LG10G13480 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.8e-79 298.9 250 64.0
BcaC02g12415 Brassica carinata HOM05D004152 ORTHO05D004878 6.4e-79 298.1 257 62.6
C03p28570 Brassica napus HOM05D004152 ORTHO05D004878 1.1e-78 297.4 262 63.0
BolC4t22054H Brassica oleracea HOM05D004152 ORTHO05D004878 1.1e-78 297.4 254 62.6
AT2G43090 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.9e-78 296.6 254 64.2
Sp4g25220 Schrenkiella parvula HOM05D004152 ORTHO05D004878 3.2e-78 295.8 261 64.0
Carub.0004s2557 Capsella rubella HOM05D004152 ORTHO05D004878 5.4e-78 295.0 258 64.7
Carub.0002s0595 Capsella rubella HOM05D004152 ORTHO05D004878 7.1e-78 294.7 257 63.4
BraA03t11610Z Brassica rapa HOM05D004152 ORTHO05D004878 9.3e-78 294.3 262 63.0
AT3G58990 Arabidopsis thaliana HOM05D004152 ORTHO05D004878 1.2e-77 293.9 250 64.8
BolC3t15222H Brassica oleracea HOM05D004152 ORTHO05D004878 1.2e-77 293.9 262 62.6
A03p23950 Brassica napus HOM05D004152 ORTHO05D004878 2.1e-77 293.1 257 63.0
CARHR169370 Cardamine hirsuta HOM05D004152 ORTHO05D004878 2.1e-77 293.1 265 63.8
AL4G41740 Arabidopsis lyrata HOM05D004152 ORTHO05D004878 2.7e-77 292.7 254 63.4
Thhalv10017142m.g Eutrema salsugineum HOM05D004152 ORTHO05D004878 3.5e-77 292.4 254 61.4
CARHR169410 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.8e-76 290.0 257 62.6
Carub.0005s2573 Capsella rubella HOM05D004152 ORTHO05D004878 6.7e-76 288.1 268 60.8
CARHR138160 Cardamine hirsuta HOM05D004152 ORTHO05D004878 1.1e-75 287.3 258 61.2
ECA240G2077 Erigeron canadensis HOM05D004152 ORTHO05D004878 4.3e-75 285.4 225 67.1
BcaNung03538 Brassica carinata HOM05D004152 ORTHO05D004878 7.4e-75 284.6 255 60.0
Aqoxy7G00694 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.3e-74 283.9 199 71.4
COL.COLO4_08312 Corchorus olitorius HOM05D004152 ORTHO05D004878 6.2e-74 281.6 260 61.9
THA.LOC104824129 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 8.1e-74 281.2 262 61.5
arahy.Tifrunner.gnm1.ann1.HAI1EF Arachis hypogaea HOM05D004152 ORTHO05D004878 1.1e-73 280.8 246 62.6
ClCG01G004210 Citrullus lanatus HOM05D004152 ORTHO05D004878 1.1e-73 280.8 254 62.6
THA.LOC104803472 Tarenaya hassleriana HOM05D004152 ORTHO05D004878 1.4e-73 280.4 264 60.6
Aqoxy7G00850 Aquilegia oxysepala HOM05D004152 ORTHO05D004878 1.8e-73 280.0 260 62.7
Duzib052G0353 Durio zibethinus HOM05D004152 ORTHO05D004878 1.8e-73 280.0 248 61.7
BcaB01g01073 Brassica carinata HOM05D004152 ORTHO05D004878 2.4e-73 279.6 223 63.2
Haze_18794 Corylus avellana HOM05D004152 ORTHO05D004878 2.4e-73 279.6 259 61.0
CiPaw.16G091100 Carya illinoinensis HOM05D004152 ORTHO05D004878 5.3e-73 278.5 254 61.4
Sed0004379 Sechium edule HOM05D004152 ORTHO05D004878 5.3e-73 278.5 264 60.6
TWI60G0584 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 2.6e-72 276.2 251 61.8
Gohir.D04G150500 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.8e-72 275.0 252 61.1
Gohir.D04G150600 Gossypium hirsutum HOM05D004152 ORTHO05D004878 5.8e-72 275.0 252 61.1
Gorai.012G137200 Gossypium raimondii HOM05D004152 ORTHO05D004878 5.8e-72 275.0 262 61.5
Thecc.02G150400 Theobroma cacao HOM05D004152 ORTHO05D004878 5.8e-72 275.0 257 60.7
Lj2C222T2 Lonicera japonica HOM05D004152 ORTHO05D004878 7.6e-72 274.6 260 60.8
Prupe.5G066300 Prunus persica HOM05D004152 ORTHO05D004878 7.6e-72 274.6 243 63.0
Solyc06g060790.1 Solanum lycopersicum HOM05D004152 ORTHO05D004878 1.3e-71 273.9 254 59.1
Potri.003G107800 Populus trichocarpa HOM05D004152 ORTHO05D004878 1.7e-71 273.5 243 60.9
Gohir.A04G110300 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.2e-71 273.1 262 60.7
Cfa019694 Carpinus fangiana HOM05D004152 ORTHO05D004878 2.9e-71 272.7 261 60.2
QL12p011587 Quercus lobata HOM05D004152 ORTHO05D004878 3.8e-71 272.3 254 60.6
Manes.01G082700 Manihot esculenta HOM05D004152 ORTHO05D004878 4.9e-71 271.9 258 58.9
Ca_20428_v3 Cicer arietinum L. HOM05D004152 ORTHO05D004878 1.1e-70 270.8 190 68.9
MELO3C005518.2 Cucumis melo HOM05D004152 ORTHO05D004878 1.1e-70 270.8 261 60.9
Sabra03G0074600 Salix brachista HOM05D004152 ORTHO05D004878 1.1e-70 270.8 243 60.1
Atru.chr9.1286 Acer truncatum HOM05D004152 ORTHO05D004878 1.4e-70 270.4 240 61.7
CANSAT21G2552 Cannabis sativa HOM05D004152 ORTHO05D004878 1.4e-70 270.4 249 61.4
Sopen06g020930 Solanum pennellii HOM05D004152 ORTHO05D004878 1.4e-70 270.4 254 59.8
Nn6g33894 Nelumbo nucifera HOM05D004152 ORTHO05D004878 1.9e-70 270.0 243 61.3
PGR031G2826 Punica granatum HOM05D004152 ORTHO05D004878 1.9e-70 270.0 255 58.8
VMungo0331G1163 Vigna mungo HOM05D004152 ORTHO05D004878 2.5e-70 269.6 247 60.3
Aa31LG1G24900 Aethionema arabicum HOM05D004152 ORTHO05D004878 3.2e-70 269.2 242 60.7
Migut.A01125 Erythranthe guttata HOM05D004152 ORTHO05D004878 3.2e-70 269.2 180 73.3
Cpa.g.sc29.188 Carica papaya HOM05D004152 ORTHO05D004878 4.2e-70 268.9 260 60.4
Gorai.005G214700 Gossypium raimondii HOM05D004152 ORTHO05D004878 4.2e-70 268.9 261 60.9
Oeu040710.1 Olea europaea HOM05D004152 ORTHO05D004878 4.2e-70 268.9 187 70.1
Sc10g0005540 Simmondsia chinensis HOM05D004152 ORTHO05D004878 4.2e-70 268.9 257 61.5
PGSC0003DMG400024154 Solanum tuberosum HOM05D004152 ORTHO05D004878 4.2e-70 268.9 254 59.4
Nitab4.5_0000618g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 5.5e-70 268.5 258 58.1
SGA_v2.0_scaffold104G30172 Striga asiatica HOM05D004152 ORTHO05D004878 5.5e-70 268.5 245 59.2
MSTRG.12117 Avicennia marina HOM05D004152 ORTHO05D004878 7.1e-70 268.1 255 59.2
Glyma.08G210500 Glycine max HOM05D004152 ORTHO05D004878 9.3e-70 267.7 229 62.9
TWI81G0703 Tripterygium wilfordii HOM05D004152 ORTHO05D004878 9.3e-70 267.7 254 58.3
CSS0047405 Camellia sinensis var. sinensis HOM05D004152 ORTHO05D004878 1.2e-69 267.3 181 71.8
AUR62007107 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 258 58.1
FAN18G1702 Fragaria x ananassa HOM05D004152 ORTHO05D004878 1.6e-69 266.9 244 60.2
Lj3g0007947 Lotus japonicus HOM05D004152 ORTHO05D004878 1.6e-69 266.9 252 60.3
CsaV3_5G004400 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.1e-69 266.5 247 58.3
FAN04G2897 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.1e-69 266.5 223 61.9
Nitab4.5_0002881g0050 Nicotiana tabacum HOM05D004152 ORTHO05D004878 2.1e-69 266.5 258 58.1
PSO210G4930 Papaver somniferum HOM05D004152 ORTHO05D004878 2.1e-69 266.5 257 59.5
Glyma.07G032200 Glycine max HOM05D004152 ORTHO05D004878 2.7e-69 266.2 214 65.4
Gohir.D02G191900 Gossypium hirsutum HOM05D004152 ORTHO05D004878 2.7e-69 266.2 259 59.1
unitig_899.g15440 Utricularia gibba HOM05D004152 ORTHO05D004878 3.5e-69 265.8 204 64.7
Ah.12g054170 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.6e-69 265.4 264 58.0
PSO210G0624 Papaver somniferum HOM05D004152 ORTHO05D004878 4.6e-69 265.4 259 60.6
MD04G1062100 Malus domestica HOM05D004152 ORTHO05D004878 6.0e-69 265.0 248 60.5
FAN13G0727 Fragaria x ananassa HOM05D004152 ORTHO05D004878 7.9e-69 264.6 254 58.3
EL10Ac5g12362 Beta vulgaris HOM05D004152 ORTHO05D004878 1.0e-68 264.2 261 58.2
HanXRQChr03g0088791 Helianthus annuus HOM05D004152 ORTHO05D004878 1.0e-68 264.2 256 59.4
FAN08G2273 Fragaria x ananassa HOM05D004152 ORTHO05D004878 2.3e-68 263.1 255 56.9
HanXRQChr13g0417841 Helianthus annuus HOM05D004152 ORTHO05D004878 2.3e-68 263.1 250 60.0
MD06G1055800 Malus domestica HOM05D004152 ORTHO05D004878 2.3e-68 263.1 251 60.2
Lalb_Chr25g0279491 Lupinus albus HOM05D004152 ORTHO05D004878 3.9e-68 262.3 233 59.2
Medtr4g011180 Medicago truncatula HOM05D004152 ORTHO05D004878 3.9e-68 262.3 248 58.9
arahy.Tifrunner.gnm1.ann1.Y2K32V Arachis hypogaea HOM05D004152 ORTHO05D004878 5.1e-68 261.9 256 57.0
Ciclev10021871m.g Citrus clementina HOM05D004152 ORTHO05D004878 5.1e-68 261.9 240 60.0
Psat7g255640 Pisum sativum HOM05D004152 ORTHO05D004878 5.1e-68 261.9 244 58.2
TAR629G1833 Trochodendron aralioides HOM05D004152 ORTHO05D004878 8.7e-68 261.2 180 70.6
DCAR_002274 Daucus carota HOM05D004152 ORTHO05D004878 1.5e-67 260.4 245 60.0
DCAR_008502 Daucus carota HOM05D004152 ORTHO05D004878 1.5e-67 260.4 238 60.1
AUR62019969 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.9e-67 260.0 262 56.5
FvH4_5g19250 Fragaria vesca HOM05D004152 ORTHO05D004878 2.5e-67 259.6 245 58.4
Phvul.010G153800 Phaseolus vulgaris HOM05D004152 ORTHO05D004878 3.3e-67 259.2 226 62.4
CAN.G62.23 Capsicum annuum HOM05D004152 ORTHO05D004878 5.6e-67 258.5 185 69.7
Rhsim07G0110300 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.6e-67 258.5 253 62.5
SalBow6G1227 Salvia bowleyana HOM05D004152 ORTHO05D004878 1.1e-65 254.2 264 55.3
Nitab4.5_0002881g0130 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.4e-64 249.2 242 57.0
SEGI_19785 Sequoiadendron giganteum HOM05D004152 ORTHO05D004878 7.6e-64 248.1 205 62.9
ATR0693G400 Amborella trichopoda HOM05D004152 ORTHO05D004878 1.6e-61 240.4 244 57.4
Hund14573 Selenicereus undatus HOM05D004152 ORTHO05D004878 1.8e-60 236.9 204 62.3
Peaxi162Scf01022g00023 Petunia axillaris HOM05D004152 ORTHO05D004878 8.7e-60 234.6 228 56.1
Lj8A264G55 Lonicera japonica HOM05D004152 ORTHO05D004878 1.5e-59 233.8 170 70.6
BcaC01g05264 Brassica carinata HOM05D004152 ORTHO05D004878 1.9e-59 233.4 262 55.3
SMO274G0039 Selaginella moellendorffii HOM05D004152 ORTHO05D004878 7.4e-59 231.5 177 63.3
Lsat_1_v5_gn_6_92521 Lactuca sativa HOM05D004152 ORTHO05D004878 2.8e-58 229.6 200 61.5
Mapoly0001s0104 Marchantia polymorpha HOM05D004152 ORTHO05D004878 3.7e-58 229.2 196 59.7
Os02g0655300 Oryza sativa ssp. japonica HOM05D004152 ORTHO05D004878 3.7e-58 229.2 183 65.6
Cre06.g252650 Chlamydomonas reinhardtii HOM05D004152 ORTHO05D004878 6.3e-58 228.4 176 63.6
Pp3c1_29090 Physcomitrium patens HOM05D004152 ORTHO05D004878 1.1e-57 227.6 180 62.2
Actinidia10839 Actinidia chinensis HOM05D004152 ORTHO05D004878 1.4e-57 227.3 229 57.6
CDE11G0751 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 6.9e-57 224.9 220 54.5
AagrBONN_evm.TU.Sc2ySwM_228.3330 Anthoceros agrestis HOM05D004152 ORTHO05D004878 1.2e-56 224.2 192 57.8
Zm00001eb249330 Zea mays HOM05D004152 ORTHO05D004878 1.2e-56 224.2 255 52.9
Pp3c14_19120 Physcomitrium patens HOM05D004152 ORTHO05D004878 6.5e-55 218.4 178 60.7
Dinv39162 Davidia involucrata HOM05D004152 ORTHO05D004878 1.1e-51 207.6 141 70.2
CDE11G0227 Ceratophyllum demersum HOM05D004152 ORTHO05D004878 7.4e-51 204.9 153 66.0
Nitab4.5_0001410g0090 Nicotiana tabacum HOM05D004152 ORTHO05D004878 3.1e-49 199.5 184 56.5
SHI09309 Sapria himalayana HOM05D004152 ORTHO05D004878 4.1e-49 199.1 129 73.6
Gohir.A03G168700 Gossypium hirsutum HOM05D004152 ORTHO05D004878 8.5e-47 191.4 257 50.6
Nitab4.5_0002372g0010 Nicotiana tabacum HOM05D004152 ORTHO05D004878 4.7e-45 185.7 120 77.5
Cc08_g12220 Coffea canephora HOM05D004152 ORTHO05D004878 4.4e-43 179.1 225 47.6
Carub.0005s2576 Capsella rubella HOM05D004152 ORTHO05D004878 1.3e-42 177.6 215 51.6
Dinv21650 Davidia involucrata HOM05D004152 ORTHO05D004878 9.1e-41 171.4 119 68.9
HPP92_020921 Vanilla planifolia HOM05D004152 ORTHO05D004878 1.2e-40 171.0 221 48.0
TPR.G10893 Trifolium pratense HOM05D004152 ORTHO05D004878 6.5e-39 165.2 127 67.7
EL10Ac5g12363 Beta vulgaris HOM05D004152 ORTHO05D004878 1.1e-38 164.5 231 43.7
SalBow1G7183 Salvia bowleyana HOM05D004152 ORTHO05D004878 4.2e-38 162.5 195 50.3
Lj8A267T12 Lonicera japonica HOM05D004152 ORTHO05D004878 5.5e-38 162.2 252 44.8
Actinidia31515 Actinidia chinensis HOM05D004152 ORTHO05D004878 6.1e-37 158.7 169 52.7
Oeu047732.1 Olea europaea HOM05D004152 ORTHO05D004878 1.0e-36 157.9 181 49.7
Ah.12g054180 Amaranthus hybridus HOM05D004152 ORTHO05D004878 9.7e-35 151.4 211 43.1
Lj8A266T18 Lonicera japonica HOM05D004152 ORTHO05D004878 9.7e-35 151.4 252 44.0
BcaB05g25308 Brassica carinata HOM05D004152 ORTHO05D004878 1.7e-34 150.6 95 74.7
Rhsim05G0121600 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.3e-33 145.6 173 50.9
Sed0021243 Sechium edule HOM05D004152 ORTHO05D004878 5.0e-31 139.0 169 50.3
A05p03570 Brassica napus HOM05D000373 ORTHO05D007048 2.1e-29 133.7 76 80.3
C04p04140 Brassica napus HOM05D000373 ORTHO05D007048 2.1e-29 133.7 81 76.5
Lsat_1_v5_gn_7_1160 Lactuca sativa HOM05D004152 ORTHO05D004878 1.8e-25 120.6 78 75.6
AUR62007106 Chenopodium quinoa HOM05D004152 ORTHO05D004878 1.7e-23 114.0 116 55.2
C03p28580 Brassica napus HOM05D004152 ORTHO05D004878 2.8e-18 96.7 71 63.4
ATR0693G063 Amborella trichopoda HOM05D004152 ORTHO05D004878 3.7e-18 96.3 78 61.5
SalBow1G0783 Salvia bowleyana HOM05D001430 ORTHO05D004878 3.1e-17 93.2 103 45.6
Rhsim03G0103100 Rhododendron simsii HOM05D004152 ORTHO05D004878 5.9e-16 89.0 88 54.5
A03p23960 Brassica napus HOM05D004152 ORTHO05D004878 1.9e-14 84.0 51 82.4
Lsat_1_v5_gn_5_55401 Lactuca sativa HOM05D004152 ORTHO05D004878 7.2e-14 82.0 96 52.1
BcaB01g00650 Brassica carinata HOM05D004152 ORTHO05D004878 1.2e-11 74.7 46 76.1
Ah.14g083550 Amaranthus hybridus HOM05D004152 ORTHO05D004878 4.4e-11 72.8 50 68.0
GSVIVG01007403001 Vitis vinifera HOM05D004152 ORTHO05D004878 3.7e-10 69.7 193 31.6
Cfa024802 Carpinus fangiana HOM05D003112 ORTHO05D003660 5.4e-09 65.9 135 36.3
CsaV3_5G004360 Cucumis sativus L. HOM05D004152 ORTHO05D004878 2.0e-08 63.9 55 54.5
PRCOL_00005264 Prasinoderma coloniale HOM05D003112 ORTHO05D003660 4.5e-08 62.8 135 34.8
MCO01G562 Micromonas commoda HOM05D003112 ORTHO05D003660 1.3e-07 61.2 138 32.6
BcaC01g01539 Brassica carinata HOM05D004152 ORTHO05D004878 4.3e-06 56.2 62 48.4
Ca_28701_v3 Cicer arietinum L. HOM05D004152 ORTHO05D003660 4.3e-06 56.2 107 37.4
COL.COLO4_34273 Corchorus olitorius HOM05D004152 ORTHO05D004878 7.3e-06 55.5 198 29.3


User provided reference genes

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