Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12352 Brassica carinata HOM05D004249 ORTHO05D005015 8.7e-116 420.2 200 100.0
C04p04870 Brassica napus HOM05D004249 ORTHO05D005015 1.3e-114 416.4 198 100.0
BolC4t22117H Brassica oleracea HOM05D004249 ORTHO05D005015 1.3e-114 416.4 198 100.0
A05p04090 Brassica napus HOM05D004249 ORTHO05D005015 1.6e-109 399.4 198 96.0
BraA05t19396Z Brassica rapa HOM05D004249 ORTHO05D005015 1.6e-109 399.4 198 96.0
Sp4g26020 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.6e-101 371.3 195 90.3
BcaB02g08886 Brassica carinata HOM05D004249 ORTHO05D005015 1.9e-99 365.9 180 95.6
Aa31LG1G25630 Aethionema arabicum HOM05D004249 ORTHO05D005015 4.3e-91 338.2 197 80.2
AT2G43940 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 3.0e-84 315.5 196 74.0
AL4G42810 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 4.3e-83 311.6 196 74.0
Carub.0004s2650 Capsella rubella HOM05D004249 ORTHO05D005015 7.4e-83 310.8 193 74.6
Thhalv10001619m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.8e-82 308.9 192 75.0
CARHR139110 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.8e-81 306.2 196 74.0
Sp4g26030 Schrenkiella parvula HOM05D004249 ORTHO05D005015 4.5e-80 301.6 197 71.1
BcaB02g08885 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-79 298.5 199 74.4
A04p33130 Brassica napus HOM05D004249 ORTHO05D005015 3.2e-78 295.4 194 71.1
THA.LOC104802342 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 5.5e-78 294.7 193 72.0
BraA04t18772Z Brassica rapa HOM05D004249 ORTHO05D005015 7.2e-78 294.3 194 71.1
BcaC02g07142 Brassica carinata HOM05D004249 ORTHO05D005015 3.6e-77 292.0 194 71.1
BolC4t28585H Brassica oleracea HOM05D004249 ORTHO05D005015 3.6e-77 292.0 194 71.1
C04p70830 Brassica napus HOM05D004249 ORTHO05D005015 6.7e-76 287.7 194 70.6
BcaB06g29508 Brassica carinata HOM05D004249 ORTHO05D005015 4.8e-74 281.6 188 71.3
THA.LOC104804276 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 1.4e-73 280.0 197 65.5
BcaB06g29349 Brassica carinata HOM05D004249 ORTHO05D005015 3.8e-71 271.9 177 71.8
Potri.017G007000 Populus trichocarpa HOM05D004249 ORTHO05D005015 2.7e-69 265.8 193 62.2
Atru.chr3.2004 Acer truncatum HOM05D004249 ORTHO05D005015 3.6e-69 265.4 193 61.7
FAN26G1858 Fragaria x ananassa HOM05D004249 ORTHO05D005015 7.9e-69 264.2 196 60.7
Cpa.g.sc151.3 Carica papaya HOM05D004249 ORTHO05D005015 1.0e-68 263.8 193 62.7
Eucgr.A00430 Eucalyptus grandis HOM05D004249 ORTHO05D005015 3.0e-68 262.3 192 62.0
Ciclev10024361m.g Citrus clementina HOM05D004249 ORTHO05D005015 3.9e-68 261.9 193 61.1
Prupe.7G269600 Prunus persica HOM05D004249 ORTHO05D005015 3.9e-68 261.9 195 58.5
Cpa.g.sc151.2 Carica papaya HOM05D004249 ORTHO05D005015 1.1e-67 260.4 194 60.8
GSVIVG01038246001 Vitis vinifera HOM05D004249 ORTHO05D005015 1.5e-67 260.0 196 59.2
RcHm_v2.0_Chr2g0084541 Rosa chinensis HOM05D004249 ORTHO05D005015 2.6e-67 259.2 196 59.7
PGR042G1833 Punica granatum HOM05D004249 ORTHO05D005015 3.3e-67 258.8 193 62.7
MD15G1143500 Malus domestica HOM05D004249 ORTHO05D005015 5.7e-67 258.1 196 59.2
FvH4_1g00240 Fragaria vesca HOM05D004249 ORTHO05D005015 1.3e-66 256.9 195 59.0
Cpa.g.sc151.4 Carica papaya HOM05D004249 ORTHO05D005015 4.8e-66 255.0 193 60.6
QL10p064195 Quercus lobata HOM05D004249 ORTHO05D005015 4.8e-66 255.0 191 58.6
THA.LOC104804252 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 6.3e-66 254.6 193 59.6
BcaC02g12353 Brassica carinata HOM05D004249 ORTHO05D005015 1.1e-65 253.8 193 59.1
C04p04840 Brassica napus HOM05D004249 ORTHO05D005015 1.1e-65 253.8 193 59.1
BcaC02g07143 Brassica carinata HOM05D004249 ORTHO05D005015 1.4e-65 253.4 193 59.1
AT2G43910 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 1.8e-65 253.1 193 59.1
BcaB06g29506 Brassica carinata HOM05D004249 ORTHO05D005015 1.8e-65 253.1 193 59.1
Duzib093G0712 Durio zibethinus HOM05D004249 ORTHO05D005015 3.1e-65 252.3 192 58.3
GSVIVG01038247001 Vitis vinifera HOM05D004249 ORTHO05D005015 3.1e-65 252.3 193 58.0
C04p70820 Brassica napus HOM05D004249 ORTHO05D005015 4.1e-65 251.9 193 58.5
Hma1.2p1_0872F.1_g231130 Hydrangea macrophylla HOM05D004249 ORTHO05D005015 4.1e-65 251.9 196 57.7
A05p04060 Brassica napus HOM05D004249 ORTHO05D005015 5.3e-65 251.5 193 58.5
Sp4g26000 Schrenkiella parvula HOM05D004249 ORTHO05D005015 5.3e-65 251.5 193 59.6
Haze_11142 Corylus avellana HOM05D004249 ORTHO05D005015 7.0e-65 251.1 193 56.5
ATR0743G017 Amborella trichopoda HOM05D004249 ORTHO05D005015 9.1e-65 250.8 191 57.6
Carub.0004s2647 Capsella rubella HOM05D004249 ORTHO05D005015 1.2e-64 250.4 193 58.5
CARHR139100 Cardamine hirsuta HOM05D004249 ORTHO05D005015 1.2e-64 250.4 193 58.5
CsaV3_4G029860 Cucumis sativus L. HOM05D004249 ORTHO05D005015 1.2e-64 250.4 193 57.0
MBI10_g45897_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 1.2e-64 250.4 193 57.0
Sabra17G0007900 Salix brachista HOM05D001637 ORTHO05D002178 1.2e-64 250.4 182 62.6
AL4G42780 Arabidopsis lyrata HOM05D004249 ORTHO05D005015 1.6e-64 250.0 193 58.5
Cfa008510 Carpinus fangiana HOM05D004249 ORTHO05D005015 1.6e-64 250.0 193 56.0
Peaxi162Scf01205g00038 Petunia axillaris HOM05D004249 ORTHO05D005015 1.6e-64 250.0 193 57.5
Sed0024580 Sechium edule HOM05D004249 ORTHO05D005015 1.6e-64 250.0 193 58.0
SEGI_12768 Sequoiadendron giganteum HOM05D004249 ORTHO05D005015 1.6e-64 250.0 195 56.9
Thhalv10001612m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 2.0e-64 249.6 193 58.5
Thecc.05G001900 Theobroma cacao HOM05D004249 ORTHO05D005015 3.5e-64 248.8 193 57.5
Cc03_g16020 Coffea canephora HOM05D004249 ORTHO05D005015 5.9e-64 248.1 192 59.9
Haze_11140 Corylus avellana HOM05D004249 ORTHO05D005015 5.9e-64 248.1 193 55.4
Sp4g26010 Schrenkiella parvula HOM05D004249 ORTHO05D005015 1.0e-63 247.3 193 57.5
Actinidia34567 Actinidia chinensis HOM05D004249 ORTHO05D005015 1.3e-63 246.9 192 56.8
Aa31LG1G25620 Aethionema arabicum HOM05D004249 ORTHO05D005015 1.7e-63 246.5 193 58.5
AUR62002468 Chenopodium quinoa HOM05D004249 ORTHO05D005015 1.7e-63 246.5 211 55.5
Gorai.006G186800 Gossypium raimondii HOM05D004249 ORTHO05D005015 1.7e-63 246.5 192 56.2
PSO541G6333 Papaver somniferum HOM05D004249 ORTHO05D005015 1.7e-63 246.5 193 56.0
PGSC0003DMG400025227 Solanum tuberosum HOM05D004249 ORTHO05D005015 2.2e-63 246.1 193 55.4
PSO675G8665 Papaver somniferum HOM05D004249 ORTHO05D005015 2.9e-63 245.7 193 57.0
FAN28G1175 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.0e-63 245.0 185 60.0
Sopen08g005580 Solanum pennellii HOM05D004249 ORTHO05D005015 6.5e-63 244.6 193 56.5
Migut.G00862 Erythranthe guttata HOM05D004249 ORTHO05D005015 8.5e-63 244.2 195 57.4
CAN.G607.4 Capsicum annuum HOM05D004249 ORTHO05D005015 1.5e-62 243.4 196 56.1
CDE07G0873 Ceratophyllum demersum HOM05D004249 ORTHO05D005015 1.9e-62 243.0 192 56.2
Manes.01G010300 Manihot esculenta HOM05D004249 ORTHO05D005015 2.5e-62 242.7 193 56.0
PSO675G2456 Papaver somniferum HOM05D004249 ORTHO05D005015 2.5e-62 242.7 194 56.2
QL10p064299 Quercus lobata HOM05D000004 ORTHO05D000002 4.2e-62 241.9 187 57.2
MSTRG.9267 Avicennia marina HOM05D004249 ORTHO05D005015 5.5e-62 241.5 192 55.7
PSO675G2958 Papaver somniferum HOM05D004249 ORTHO05D005015 5.5e-62 241.5 194 55.7
PSO675G5594 Papaver somniferum HOM05D004249 ORTHO05D005015 7.2e-62 241.1 193 56.5
Aqoxy5G00067 Aquilegia oxysepala HOM05D004249 ORTHO05D005015 1.2e-61 240.4 193 53.4
PSO675G1470 Papaver somniferum HOM05D004249 ORTHO05D005015 1.2e-61 240.4 192 55.7
Solyc08g014600.4 Solanum lycopersicum HOM05D004249 ORTHO05D005015 1.6e-61 240.0 193 55.4
SalBow3G0617 Salvia bowleyana HOM05D004249 ORTHO05D005015 2.1e-61 239.6 191 56.5
unitig_0.g2413 Utricularia gibba HOM05D004249 ORTHO05D005015 2.1e-61 239.6 194 55.7
BolC4t28584H Brassica oleracea HOM05D004249 ORTHO05D005015 8.0e-61 237.7 183 58.5
PSO541G3219 Papaver somniferum HOM05D004249 ORTHO05D005015 8.0e-61 237.7 194 56.7
Dinv24754 Davidia involucrata HOM05D004249 ORTHO05D005015 1.8e-60 236.5 182 58.2
AT2G43920 Arabidopsis thaliana HOM05D004249 ORTHO05D005015 2.3e-60 236.1 193 53.4
AUR62002469 Chenopodium quinoa HOM05D004249 ORTHO05D005015 2.3e-60 236.1 192 54.7
BraA04t18771Z Brassica rapa HOM05D004249 ORTHO05D005015 3.0e-60 235.7 183 57.9
vmacro05005 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 3.0e-60 235.7 204 54.4
A04p33120 Brassica napus HOM05D004249 ORTHO05D005015 5.2e-60 235.0 183 57.4
Oeu064015.2 Olea europaea HOM05D004249 ORTHO05D005015 6.7e-60 234.6 182 56.6
Hund12312 Selenicereus undatus HOM05D004249 ORTHO05D005015 6.7e-60 234.6 192 55.7
TAR633G0865 Trochodendron aralioides HOM05D004249 ORTHO05D005015 8.8e-60 234.2 183 57.4
Carub.0004s2648 Capsella rubella HOM05D004249 ORTHO05D005015 2.0e-59 233.0 193 53.9
BraA05t19394Z Brassica rapa HOM05D004249 ORTHO05D005015 4.4e-59 231.9 183 56.8
AUR62023721 Chenopodium quinoa HOM05D004249 ORTHO05D005015 4.4e-59 231.9 194 56.7
Os06g0153900 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 4.4e-59 231.9 192 55.2
BcaB02g08894 Brassica carinata HOM05D004249 ORTHO05D005015 1.3e-58 230.3 194 55.2
BolC4t22116H Brassica oleracea HOM05D004249 ORTHO05D005015 1.1e-57 227.3 191 55.0
CSS0044272 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.1e-57 227.3 171 60.8
C04p04860 Brassica napus HOM05D004249 ORTHO05D005015 1.8e-57 226.5 252 45.2
QL10p064222 Quercus lobata HOM05D000009 ORTHO05D000116 2.4e-57 226.1 189 54.0
EL10Ac3g06159 Beta vulgaris HOM05D004249 ORTHO05D005015 4.1e-57 225.3 191 55.5
Thhalv10019674m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 1.6e-56 223.4 183 54.6
BcaB02g08889 Brassica carinata HOM05D004249 ORTHO05D005015 3.5e-56 222.2 202 51.0
SGA_v2.0_scaffold37G14935 Striga asiatica HOM05D004249 ORTHO05D005015 4.5e-56 221.9 176 56.2
DCAR_027496 Daucus carota HOM05D004249 ORTHO05D005015 7.7e-56 221.1 181 54.7
FAN23G1087 Fragaria x ananassa HOM05D004249 ORTHO05D005015 1.1e-54 217.2 225 47.6
Mapoly0115s0024 Marchantia polymorpha HOM05D004249 ORTHO05D005015 7.2e-54 214.5 194 50.5
Lj6A284T20 Lonicera japonica HOM05D004249 ORTHO05D005015 4.7e-53 211.8 228 48.2
PSO541G5503 Papaver somniferum HOM05D004249 ORTHO05D005015 4.7e-53 211.8 183 51.9
Os03g0843800 Oryza sativa ssp. japonica HOM05D004249 ORTHO05D005015 6.1e-53 211.5 203 50.2
SMO144G0018 Selaginella moellendorffii HOM05D004249 ORTHO05D005015 3.0e-52 209.1 192 51.0
AagrBONN_evm.TU.Sc2ySwM_117.2259 Anthoceros agrestis HOM05D004249 ORTHO05D005015 4.0e-52 208.8 195 49.2
TWI15G0032 Tripterygium wilfordii HOM05D004249 ORTHO05D005015 2.6e-51 206.1 196 52.6
BcaB02g08891 Brassica carinata HOM05D004249 ORTHO05D005015 3.4e-51 205.7 178 54.5
BcaB06g29507 Brassica carinata HOM05D004249 ORTHO05D005015 2.0e-48 196.4 175 52.0
CiPaw.01G201200 Carya illinoinensis HOM05D004249 ORTHO05D005015 1.7e-47 193.4 196 47.4
HPP92_011584 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.8e-47 192.2 140 58.6
Gohir.A09G169300 Gossypium hirsutum HOM05D004249 ORTHO05D005015 2.5e-46 189.5 140 56.4
Nitab4.5_0007944g0050 Nicotiana tabacum HOM05D004249 ORTHO05D005015 3.3e-46 189.1 160 53.1
PSO541G3414 Papaver somniferum HOM05D004249 ORTHO05D005015 4.2e-46 188.7 193 48.2
Nitab4.5_0000013g0070 Nicotiana tabacum HOM05D004249 ORTHO05D005015 1.6e-45 186.8 160 52.5
PSO541G0314 Papaver somniferum HOM05D004249 ORTHO05D005015 4.0e-44 182.2 152 56.6
THA.LOC104824126 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 4.9e-42 175.3 119 67.2
Gohir.D09G165000 Gossypium hirsutum HOM05D004249 ORTHO05D005015 1.8e-41 173.3 192 44.3
Nn1g09449 Nelumbo nucifera HOM05D004249 ORTHO05D005015 9.2e-41 171.0 145 53.1
BolC4t22114H Brassica oleracea HOM05D004249 ORTHO05D005015 2.7e-40 169.5 127 58.3
Pp3c2_32550 Physcomitrium patens HOM05D004249 ORTHO05D005015 1.3e-39 167.2 182 44.0
CSS0037089 Camellia sinensis var. sinensis HOM05D004249 ORTHO05D005015 1.9e-38 163.3 163 51.5
COL.COLO4_19904 Corchorus olitorius HOM05D004249 ORTHO05D005015 5.2e-36 155.2 112 60.7
C09p12990 Brassica napus HOM05D004249 ORTHO05D024151 1.0e-31 141.0 173 48.0
BolC8t49376H Brassica oleracea HOM05D004249 ORTHO05D005015 1.0e-31 141.0 173 48.0
C02p63480 Brassica napus HOM05D004249 ORTHO05D005015 3.0e-31 139.4 173 47.4
MCO07G181 Micromonas commoda HOM05D004249 ORTHO05D005015 1.1e-30 137.5 205 38.0
BolC7t41877H Brassica oleracea HOM05D004249 ORTHO05D005015 2.1e-29 133.3 181 47.0
PRCOL_00002738 Prasinoderma coloniale HOM05D004249 ORTHO05D005015 1.5e-27 127.1 201 36.8
COL.COLO4_14412 Corchorus olitorius HOM05D001637 ORTHO05D002178 5.8e-27 125.2 182 38.5
Thhalv10001708m.g Eutrema salsugineum HOM05D004249 ORTHO05D005015 8.3e-26 121.3 72 84.7
AUR62023720 Chenopodium quinoa HOM05D004249 ORTHO05D005015 9.2e-25 117.9 96 52.1
HPP92_011580 Vanilla planifolia HOM05D004249 ORTHO05D005015 6.2e-21 105.1 71 59.2
vmacro00720 Vaccinium macrocarpon HOM05D004249 ORTHO05D005015 8.1e-21 104.8 89 53.9
ClCG04G002900 Citrullus lanatus HOM05D004249 ORTHO05D005015 4.0e-20 102.4 74 54.1
MELO3C033208.2 Cucumis melo HOM05D004249 ORTHO05D005015 5.2e-20 102.1 71 56.3
C08p17510 Brassica napus HOM05D004249 ORTHO05D005015 7.5e-19 98.2 76 63.2
THA.LOC104824119 Tarenaya hassleriana HOM05D004249 ORTHO05D005015 9.9e-19 97.8 70 60.0
BolC3t15278H Brassica oleracea HOM05D004249 ORTHO05D005015 2.9e-18 96.3 152 40.1
C03p29320 Brassica napus HOM05D004249 ORTHO05D005015 3.7e-18 95.9 151 40.4
MBI10_g23575_MAGBIO Magnolia biondii HOM05D004249 ORTHO05D005015 3.2e-17 92.8 60 58.3
C08p48990 Brassica napus HOM05D004249 ORTHO05D005015 7.8e-16 88.2 75 60.0
HPP92_011579 Vanilla planifolia HOM05D004249 ORTHO05D005015 3.0e-15 86.3 78 56.4
HPP92_011581 Vanilla planifolia HOM05D004249 ORTHO05D005015 1.6e-13 80.5 57 56.1
Nn1g09453 Nelumbo nucifera HOM05D004249 ORTHO05D005015 7.6e-11 71.6 44 61.4
EL10Ac3g06161 Beta vulgaris HOM05D004249 ORTHO05D005015 5.4e-09 65.5 52 55.8
SGA_v2.0_scaffold37G14917 Striga asiatica HOM05D004249 ORTHO05D005015 1.5e-06 57.4 47 57.4
Cfa025661 Carpinus fangiana HOM05D004249 ORTHO05D005015 5.6e-06 55.5 130 32.3
FAN23G1236 Fragaria x ananassa HOM05D004249 ORTHO05D005015 5.6e-06 55.5 40 60.0


User provided reference genes

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