Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g12068 Brassica carinata HOM05D006750 ORTHO05D008426 1.1e-89 333.2 161 100.0
BolC4t22432H Brassica oleracea HOM05D006750 ORTHO05D008426 1.2e-88 329.7 161 98.8
C04p08300 Brassica napus HOM05D006750 ORTHO05D008426 2.1e-88 328.9 161 98.1
BcaC02g11618 Brassica carinata HOM05D006750 ORTHO05D008426 2.6e-86 322.0 159 96.9
C04p13120 Brassica napus HOM05D006750 ORTHO05D008426 2.6e-86 322.0 159 96.9
BraA05t19661Z Brassica rapa HOM05D006750 ORTHO05D008426 7.5e-86 320.5 159 96.2
A05p06970 Brassica napus HOM05D006750 ORTHO05D008426 1.9e-84 315.8 157 96.2
BcaB02g09122 Brassica carinata HOM05D006750 ORTHO05D008426 1.2e-80 303.1 161 90.7
Sp4g21740 Schrenkiella parvula HOM05D006750 ORTHO05D008426 1.7e-74 282.7 159 85.5
Thhalv10017350m.g Eutrema salsugineum HOM05D006750 ORTHO05D008426 6.6e-74 280.8 159 85.5
Carub.0004s2150 Capsella rubella HOM05D006750 ORTHO05D008426 2.1e-72 275.8 159 83.6
AT2G39440 Arabidopsis thaliana HOM05D006750 ORTHO05D008426 3.8e-69 265.0 159 79.9
AL4G36810 Arabidopsis lyrata HOM05D006750 ORTHO05D008426 6.4e-69 264.2 154 83.1
Sp4g08180 Schrenkiella parvula HOM05D006750 ORTHO05D008426 8.4e-69 263.8 166 77.7
CARHR134300 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.4e-68 261.2 159 79.2
THA.LOC104824253 Tarenaya hassleriana HOM05D006750 ORTHO05D008426 4.0e-55 218.4 158 63.3
Ciclev10016972m.g Citrus clementina HOM05D006750 ORTHO05D008426 3.9e-50 201.8 154 60.4
Atru.chr12.2220 Acer truncatum HOM05D006750 ORTHO05D008426 8.7e-50 200.7 142 63.4
Thecc.06G141200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.3e-48 196.8 140 64.3
MELO3C021769.2 Cucumis melo HOM05D006750 ORTHO05D008426 2.8e-48 195.7 154 57.8
Sed0026407 Sechium edule HOM05D006750 ORTHO05D008426 6.2e-48 194.5 153 59.5
Gohir.D05G369200 Gossypium hirsutum HOM05D006750 ORTHO05D008426 1.1e-47 193.7 146 63.0
Thecc.06G140200 Theobroma cacao HOM05D006750 ORTHO05D008426 1.1e-47 193.7 139 64.0
Gorai.009G437900 Gossypium raimondii HOM05D006750 ORTHO05D008426 1.4e-47 193.4 146 63.0
TWI63G0081 Tripterygium wilfordii HOM05D006750 ORTHO05D008426 2.4e-47 192.6 145 60.0
Gohir.A04G017000 Gossypium hirsutum HOM05D006750 ORTHO05D008426 3.1e-47 192.2 146 62.3
CsaV3_1G046580 Cucumis sativus L. HOM05D006750 ORTHO05D008426 2.0e-46 189.5 153 56.9
RhsimUnG0232200 Rhododendron simsii HOM05D006750 ORTHO05D008426 1.3e-45 186.8 157 54.1
Cc09_g06280 Coffea canephora HOM05D006750 ORTHO05D008426 1.7e-45 186.4 154 58.4
ClCG01G009300 Citrullus lanatus HOM05D006750 ORTHO05D008426 2.2e-45 186.0 155 57.4
vmacro03507 Vaccinium macrocarpon HOM05D006750 ORTHO05D008426 2.9e-45 185.7 152 58.6
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 4.9e-45 184.9 111 77.5
FAN25G1681 Fragaria x ananassa HOM05D006750 ORTHO05D008426 8.4e-45 184.1 156 53.8
Potri.012G120100 Populus trichocarpa HOM05D006750 ORTHO05D008426 1.9e-44 183.0 145 57.2
CSS0027015 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 2.4e-44 182.6 152 53.3
FvH4_3g12150 Fragaria vesca HOM05D006750 ORTHO05D008426 2.4e-44 182.6 156 53.8
Duzib235G0570 Durio zibethinus HOM05D006750 ORTHO05D008426 4.2e-44 181.8 129 65.9
Potri.012G120220 Populus trichocarpa HOM05D006750 ORTHO05D008426 4.2e-44 181.8 145 56.6
TAR627G0115 Trochodendron aralioides HOM05D006750 ORTHO05D008426 4.2e-44 181.8 154 55.8
Prupe.4G110300 Prunus persica HOM05D006750 ORTHO05D008426 7.1e-44 181.0 160 52.5
Lj1A1143T38 Lonicera japonica HOM05D006750 ORTHO05D008426 1.2e-43 180.3 143 60.8
FAN16G3293 Fragaria x ananassa HOM05D006750 ORTHO05D008426 1.6e-43 179.9 145 55.9
PSO541G1844 Papaver somniferum HOM05D006750 ORTHO05D008426 2.1e-43 179.5 156 54.5
CAN.G1222.19 Capsicum annuum HOM05D006750 ORTHO05D008426 2.7e-43 179.1 155 55.5
MD10G1234600 Malus domestica HOM05D006750 ORTHO05D008426 2.7e-43 179.1 151 54.3
Solyc02g069070.3 Solanum lycopersicum HOM05D006750 ORTHO05D008426 2.7e-43 179.1 155 56.1
PSO675G8070 Papaver somniferum HOM05D006750 ORTHO05D008426 4.6e-43 178.3 156 53.2
CANSAT21G0613 Cannabis sativa HOM05D006750 ORTHO05D008426 1.0e-42 177.2 160 53.8
Actinidia22388 Actinidia chinensis HOM05D006750 ORTHO05D008426 1.8e-42 176.4 169 50.3
HanXRQChr07g0189661 Helianthus annuus HOM05D006750 ORTHO05D008426 1.8e-42 176.4 157 52.9
MD05G1254400 Malus domestica HOM05D006750 ORTHO05D008426 3.0e-42 175.6 151 54.3
Nn7g38126 Nelumbo nucifera HOM05D006750 ORTHO05D008426 3.0e-42 175.6 154 53.2
SGA_v2.0_scaffold298G47680 Striga asiatica HOM05D006750 ORTHO05D008426 3.9e-42 175.3 141 55.3
Nitab4.5_0003773g0080 Nicotiana tabacum HOM05D006750 ORTHO05D008426 5.1e-42 174.9 155 54.8
Hma1.2p1_0040F.1_g025070 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 6.7e-42 174.5 131 60.3
Sabra15G0136900 Salix brachista HOM05D006750 ORTHO05D008426 6.7e-42 174.5 142 57.0
SalBow8G0594 Salvia bowleyana HOM05D006750 ORTHO05D008426 6.7e-42 174.5 136 55.9
SalBow8G2736 Salvia bowleyana HOM05D006750 ORTHO05D008426 6.7e-42 174.5 136 55.9
DCAR_004323 Daucus carota HOM05D006750 ORTHO05D008426 8.7e-42 174.1 144 56.2
CiPaw.10G065100 Carya illinoinensis HOM05D006750 ORTHO05D008426 1.1e-41 173.7 144 53.5
ECA246G4127 Erigeron canadensis HOM05D006750 ORTHO05D008426 4.3e-41 171.8 138 55.8
PGR142G2582 Punica granatum HOM05D006750 ORTHO05D008426 4.3e-41 171.8 138 58.0
Lsat_1_v5_gn_5_36321 Lactuca sativa HOM05D006750 ORTHO05D008426 7.4e-41 171.0 155 53.5
Manes.11G104340 Manihot esculenta HOM05D006750 ORTHO05D008426 7.4e-41 171.0 141 52.5
Dinv11873 Davidia involucrata HOM05D006750 ORTHO05D008426 1.3e-40 170.2 132 58.3
Nitab4.5_0002056g0050 Nicotiana tabacum HOM05D006750 ORTHO05D008426 1.3e-40 170.2 155 53.5
GSVIVG01012094001 Vitis vinifera HOM05D006750 ORTHO05D008426 2.1e-40 169.5 138 52.9
Haze_06024 Corylus avellana HOM05D006750 ORTHO05D008426 3.7e-40 168.7 148 53.4
RcHm_v2.0_Chr5g0019891 Rosa chinensis HOM05D006750 ORTHO05D008426 4.8e-40 168.3 156 51.9
CSS0019703 Camellia sinensis var. sinensis HOM05D006750 ORTHO05D008426 8.2e-40 167.5 143 51.7
Haze_06026 Corylus avellana HOM05D006750 ORTHO05D008426 1.1e-39 167.2 148 52.7
Migut.M01971 Erythranthe guttata HOM05D006750 ORTHO05D008426 1.4e-39 166.8 140 52.9
Eucgr.D01041 Eucalyptus grandis HOM05D006750 ORTHO05D008426 5.3e-39 164.9 152 52.0
MSTRG.22268 Avicennia marina HOM05D006750 ORTHO05D008426 1.5e-38 163.3 136 53.7
Oeu052673.2 Olea europaea HOM05D006750 ORTHO05D008426 1.5e-38 163.3 150 51.3
QL11p018076 Quercus lobata HOM05D006750 ORTHO05D008426 1.0e-37 160.6 143 54.5
Aqoxy1G01469 Aquilegia oxysepala HOM05D006750 ORTHO05D008426 1.3e-37 160.2 153 49.7
CDE06G2778 Ceratophyllum demersum HOM05D006750 ORTHO05D008426 2.2e-37 159.5 133 57.1
unitig_748.g7497 Utricularia gibba HOM05D006750 ORTHO05D008426 6.5e-37 157.9 166 45.8
Phvul.003G153500 Phaseolus vulgaris HOM05D006750 ORTHO05D008426 8.4e-37 157.5 135 51.9
Lj4g0008374 Lotus japonicus HOM05D006750 ORTHO05D008426 1.1e-36 157.1 139 51.1
COL.COLO4_30981 Corchorus olitorius HOM05D006750 ORTHO05D008426 1.9e-36 156.4 110 65.5
EL10Ac2g02809 Beta vulgaris HOM05D006750 ORTHO05D008426 2.5e-36 156.0 159 49.7
CARHR087370 Cardamine hirsuta HOM05D006750 ORTHO05D008426 5.5e-36 154.8 93 80.6
VMungo1215G0360 Vigna mungo HOM05D006750 ORTHO05D008426 1.2e-35 153.7 137 51.1
Ca_21154_v3 Cicer arietinum L. HOM05D006750 ORTHO05D008426 1.6e-35 153.3 137 53.3
Glyma.02G206800 Glycine max HOM05D006750 ORTHO05D008426 3.5e-35 152.1 138 50.7
AUR62007362 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.6e-35 151.8 138 52.2
Psat0s3953g0080 Pisum sativum HOM05D006750 ORTHO05D008426 6.0e-35 151.4 155 47.7
HPP92_004186 Vanilla planifolia HOM05D006750 ORTHO05D008426 1.3e-34 150.2 152 48.0
arahy.Tifrunner.gnm1.ann1.RPZE8L Arachis hypogaea HOM05D006750 ORTHO05D008426 1.5e-33 146.7 137 47.4
arahy.Tifrunner.gnm1.ann1.8322W6 Arachis hypogaea HOM05D006750 ORTHO05D008426 1.9e-33 146.4 137 47.4
AUR62018626 Chenopodium quinoa HOM05D006750 ORTHO05D008426 4.3e-33 145.2 138 52.2
Os02g0168900 Oryza sativa ssp. japonica HOM05D006750 ORTHO05D008426 2.8e-32 142.5 152 50.0
Sc05g0005750 Simmondsia chinensis HOM05D006750 ORTHO05D008426 3.7e-32 142.1 126 52.4
Lalb_Chr02g0152091 Lupinus albus HOM05D006750 ORTHO05D008426 6.3e-32 141.4 144 47.9
TPR.G24866 Trifolium pratense HOM05D006750 ORTHO05D008426 6.3e-32 141.4 138 47.8
Ah.12g055560 Amaranthus hybridus HOM05D002269 ORTHO05D002421 1.0e-29 134.0 163 41.7
Hma1.2p1_0040F.1_g025080 Hydrangea macrophylla HOM05D006750 ORTHO05D008426 4.6e-27 125.2 97 60.8
Cfa000723 Carpinus fangiana HOM05D006750 ORTHO05D008426 3.9e-26 122.1 104 54.8
Peaxi162Scf00149g00921 Petunia axillaris HOM05D006750 ORTHO05D008426 5.1e-26 121.7 155 42.6
Pp3c2_9480 Physcomitrium patens HOM05D006750 ORTHO05D008426 1.1e-25 120.6 138 41.3
ATR0763G132 Amborella trichopoda HOM05D006750 ORTHO05D008426 1.5e-25 120.2 146 43.8
Mapoly0007s0049 Marchantia polymorpha HOM05D006750 ORTHO05D008426 1.7e-24 116.7 153 37.9
SMO367G1186 Selaginella moellendorffii HOM05D006750 ORTHO05D008426 6.3e-24 114.8 132 40.9
CBR_g39953 Chara braunii HOM05D006750 ORTHO05D008426 2.4e-23 112.8 160 36.9
SHI31544 Sapria himalayana HOM05D006750 ORTHO05D008426 7.7e-22 107.8 199 32.2
Cpa.g.sc135.32 Carica papaya HOM05D006750 ORTHO05D008426 9.4e-20 100.9 65 64.6
Hund11170 Selenicereus undatus HOM05D006750 ORTHO05D008426 3.3e-17 92.4 62 61.3
Zm00001eb233030 Zea mays HOM05D006750 ORTHO05D008426 1.2e-14 84.0 151 33.1
Cre08.g378100 Chlamydomonas reinhardtii HOM05D006750 ORTHO05D008426 2.6e-14 82.8 134 33.6
Sopen02g018170 Solanum pennellii HOM05D006750 ORTHO05D008426 2.2e-13 79.7 64 56.2
AagrBONN_evm.TU.Sc2ySwM_344.3424 Anthoceros agrestis HOM05D006750 ORTHO05D008426 3.2e-12 75.9 112 36.6
Hund11169 Selenicereus undatus HOM05D006750 ORTHO05D008426 3.3e-09 65.9 86 40.7
Zm00001eb233050 Zea mays HOM05D006750 ORTHO05D008426 1.1e-07 60.8 129 33.3
PRCOL_00005799 Prasinoderma coloniale HOM05D006750 ORTHO05D008426 2.6e-06 56.2 143 29.4
TPR.G24917 Trifolium pratense HOM05D006750 ORTHO05D008426 4.5e-06 55.5 38 60.5


User provided reference genes

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