Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g11365 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-154 548.9 282 100.0
C04p16530 Brassica napus HOM05D004545 ORTHO05D005420 3.1e-151 538.5 286 97.6
BraA05t20202Z Brassica rapa HOM05D004545 ORTHO05D005420 3.2e-140 501.9 282 93.3
Thhalv10016881m.g Eutrema salsugineum HOM05D004545 ORTHO05D005420 7.4e-137 490.7 297 88.9
BolC4t23201H Brassica oleracea HOM05D004545 ORTHO05D005420 6.2e-136 487.6 304 85.5
A03p18410 Brassica napus HOM05D004545 ORTHO05D005420 4.0e-135 485.0 298 87.9
BcaC01g05879 Brassica carinata HOM05D004545 ORTHO05D005420 9.0e-135 483.8 298 87.9
C03p21500 Brassica napus HOM05D004545 ORTHO05D005420 4.5e-134 481.5 298 87.6
BcaB02g10513 Brassica carinata HOM05D004545 ORTHO05D005420 1.3e-133 479.9 298 88.6
A05p12640 Brassica napus HOM05D004545 ORTHO05D005420 2.2e-133 479.2 267 93.3
Sp4g15340 Schrenkiella parvula HOM05D004545 ORTHO05D005420 6.5e-133 477.6 298 85.6
BraA03t11104Z Brassica rapa HOM05D004545 ORTHO05D005420 3.2e-132 475.3 316 82.6
BolC3t14537H Brassica oleracea HOM05D004545 ORTHO05D005420 2.7e-131 472.2 316 82.9
Aa31LG5G4640 Aethionema arabicum HOM05D004545 ORTHO05D005420 2.5e-129 465.7 294 83.7
Carub.0004s1443 Capsella rubella HOM05D004545 ORTHO05D005420 3.7e-128 461.8 296 83.8
AT2G32980 Arabidopsis thaliana HOM05D004545 ORTHO05D005420 8.2e-128 460.7 298 83.2
CARHR126930 Cardamine hirsuta HOM05D004545 ORTHO05D005420 1.4e-127 459.9 296 82.8
AL120U10020 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 5.3e-127 458.0 295 83.4
AL7G46590 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 1.8e-122 443.0 252 92.1
BcaB01g03956 Brassica carinata HOM05D004545 ORTHO05D005420 2.3e-122 442.6 266 87.2
Manes.13G066400 Manihot esculenta HOM05D004545 ORTHO05D005420 9.0e-119 430.6 303 76.2
MELO3C019739.2 Cucumis melo HOM05D004545 ORTHO05D005420 4.5e-118 428.3 303 74.6
Prupe.3G211000 Prunus persica HOM05D004545 ORTHO05D005420 4.5e-118 428.3 297 76.4
CsaV3_6G015340 Cucumis sativus L. HOM05D004545 ORTHO05D005420 7.7e-118 427.6 303 74.3
Haze_12771 Corylus avellana HOM05D004545 ORTHO05D005420 1.0e-117 427.2 303 75.2
Duzib133G1216 Durio zibethinus HOM05D004545 ORTHO05D005420 1.3e-117 426.8 301 75.4
Thecc.01G181500 Theobroma cacao HOM05D004545 ORTHO05D005420 2.9e-117 425.6 303 75.2
CANSAT64G0134 Cannabis sativa HOM05D004545 ORTHO05D005420 6.5e-117 424.5 300 75.0
Hma1.2p1_0177F.1_g078020 Hydrangea macrophylla HOM05D004545 ORTHO05D005420 6.5e-117 424.5 299 73.9
Manes.12G070000 Manihot esculenta HOM05D004545 ORTHO05D005420 6.5e-117 424.5 300 74.7
CiPaw.03G155600 Carya illinoinensis HOM05D004545 ORTHO05D005420 8.5e-117 424.1 298 75.8
Cpa.g.sc132.18 Carica papaya HOM05D004545 ORTHO05D005420 1.9e-116 422.9 299 75.3
COL.COLO4_21869 Corchorus olitorius HOM05D004545 ORTHO05D005420 1.9e-116 422.9 303 75.2
MD17G1103700 Malus domestica HOM05D004545 ORTHO05D005420 2.5e-116 422.5 299 74.9
Sed0009821 Sechium edule HOM05D004545 ORTHO05D005420 2.5e-116 422.5 297 73.7
RcHm_v2.0_Chr2g0158271 Rosa chinensis HOM05D004545 ORTHO05D005420 1.2e-115 420.2 294 76.9
Ciclev10016078m.g Citrus clementina HOM05D004545 ORTHO05D005420 2.7e-115 419.1 305 76.1
QL08p030801 Quercus lobata HOM05D004545 ORTHO05D005420 2.7e-115 419.1 304 74.0
GSVIVG01030499001 Vitis vinifera HOM05D004545 ORTHO05D005420 2.7e-115 419.1 289 77.2
Atru.chr6.3251 Acer truncatum HOM05D004545 ORTHO05D005420 4.6e-115 418.3 304 74.0
ClCG02G018050 Citrullus lanatus HOM05D004545 ORTHO05D005420 4.6e-115 418.3 313 71.2
Sabra02G0172100 Salix brachista HOM05D004545 ORTHO05D005420 6.1e-115 417.9 295 76.3
FvH4_6g42360 Fragaria vesca HOM05D004545 ORTHO05D005420 2.3e-114 416.0 293 76.8
THA.LOC104826135 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 2.3e-114 416.0 267 83.1
PGR142G4169 Punica granatum HOM05D004545 ORTHO05D005420 3.9e-114 415.2 304 73.4
FAN14G2961 Fragaria x ananassa HOM05D004545 ORTHO05D005420 6.7e-114 414.5 293 76.5
TWI18G1088 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 6.7e-114 414.5 303 74.3
MD09G1113600 Malus domestica HOM05D004545 ORTHO05D005420 8.8e-114 414.1 297 73.4
CiPaw.04G110900 Carya illinoinensis HOM05D004545 ORTHO05D005420 1.1e-113 413.7 303 73.3
Potri.002G225100 Populus trichocarpa HOM05D004545 ORTHO05D005420 2.5e-113 412.5 299 74.9
Actinidia10802 Actinidia chinensis HOM05D004545 ORTHO05D005420 3.3e-113 412.1 298 73.2
FAN05G0363 Fragaria x ananassa HOM05D004545 ORTHO05D005420 3.3e-113 412.1 293 76.1
Gohir.D07G193600 Gossypium hirsutum HOM05D004545 ORTHO05D005420 4.3e-113 411.8 304 72.0
FAN02G2244 Fragaria x ananassa HOM05D004545 ORTHO05D005420 9.7e-113 410.6 306 74.2
Gohir.A07G187100 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.3e-112 410.2 304 72.7
Gorai.001G216700 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.7e-112 409.8 304 71.7
Solyc08g013990.3 Solanum lycopersicum HOM05D004545 ORTHO05D005420 4.8e-112 408.3 289 75.1
SGA_v2.0_scaffold106G30667 Striga asiatica HOM05D004545 ORTHO05D005420 4.8e-112 408.3 296 72.3
Dinv08724 Davidia involucrata HOM05D004545 ORTHO05D005420 6.3e-112 407.9 286 75.2
Oeu008952.2 Olea europaea HOM05D004545 ORTHO05D005420 1.4e-111 406.8 296 71.6
Eucgr.K00758 Eucalyptus grandis HOM05D004545 ORTHO05D005420 1.5e-110 403.3 299 72.9
Potri.014G158000 Populus trichocarpa HOM05D004545 ORTHO05D005420 1.5e-110 403.3 299 73.2
Nitab4.5_0008425g0010 Nicotiana tabacum HOM05D004545 ORTHO05D005420 2.6e-110 402.5 291 74.9
CSS0044911 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 3.4e-110 402.1 298 73.5
CAN.G466.2 Capsicum annuum HOM05D004545 ORTHO05D005420 3.4e-110 402.1 291 74.9
TAR626G1663 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.4e-110 402.1 304 70.1
TWI36G1393 Tripterygium wilfordii HOM05D004545 ORTHO05D005420 4.5e-110 401.7 303 73.3
Migut.L01518 Erythranthe guttata HOM05D004545 ORTHO05D005420 5.9e-110 401.4 283 74.6
vmacro12662 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 5.9e-110 401.4 302 73.8
Ah.01g004130 Amaranthus hybridus HOM05D004545 ORTHO05D005420 1.3e-109 400.2 295 73.6
CSS0041882 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.2e-109 399.4 298 73.2
AL7G46610 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 2.9e-109 399.1 295 75.6
Sed0012432 Sechium edule HOM05D004545 ORTHO05D005420 2.9e-109 399.1 276 74.6
Lsat_1_v5_gn_5_124360 Lactuca sativa HOM05D004545 ORTHO05D005420 6.5e-109 397.9 285 74.4
Sabra14G0120000 Salix brachista HOM05D004545 ORTHO05D005420 1.9e-108 396.4 298 72.1
Sc12g0002080 Simmondsia chinensis HOM05D004545 ORTHO05D005420 4.2e-108 395.2 294 72.1
Nitab4.5_0005035g0030 Nicotiana tabacum HOM05D004545 ORTHO05D005420 5.5e-108 394.8 290 72.8
EL10Ac7g17335 Beta vulgaris HOM05D004545 ORTHO05D005420 1.2e-107 393.7 291 70.8
HanXRQChr12g0373651 Helianthus annuus HOM05D004545 ORTHO05D005420 1.2e-107 393.7 271 76.8
Nitab4.5_0000242g0090 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.6e-107 393.3 291 72.2
HanXRQChr10g0306541 Helianthus annuus HOM05D004545 ORTHO05D005420 2.1e-107 392.9 270 75.6
ECA234G0510 Erigeron canadensis HOM05D004545 ORTHO05D005420 6.1e-107 391.3 278 75.2
Cc04_g08550 Coffea canephora HOM05D004545 ORTHO05D005420 7.9e-107 391.0 299 70.2
THA.LOC104816035 Tarenaya hassleriana HOM05D004545 ORTHO05D005420 1.0e-106 390.6 216 92.1
Glyma.20G151100 Glycine max HOM05D004545 ORTHO05D005420 1.4e-106 390.2 271 74.5
Phvul.007G062600 Phaseolus vulgaris HOM05D004545 ORTHO05D005420 3.0e-106 389.0 267 75.3
VMungo0720G1040 Vigna mungo HOM05D004545 ORTHO05D005420 3.9e-106 388.7 262 76.7
Rhsim04G0050700 Rhododendron simsii HOM05D004545 ORTHO05D005420 6.7e-106 387.9 343 65.3
Migut.H01332 Erythranthe guttata HOM05D004545 ORTHO05D005420 2.0e-105 386.3 277 72.9
PSO339G5690 Papaver somniferum HOM05D004545 ORTHO05D005420 3.3e-105 385.6 293 68.6
Peaxi162Scf00075g01538 Petunia axillaris HOM05D004545 ORTHO05D005420 3.3e-105 385.6 292 72.9
Glyma.10G243100 Glycine max HOM05D004545 ORTHO05D005420 2.2e-104 382.9 271 73.8
AL4G28510 Arabidopsis lyrata HOM05D004545 ORTHO05D005420 3.7e-104 382.1 293 72.7
PSO339G1796 Papaver somniferum HOM05D004545 ORTHO05D005420 3.7e-104 382.1 293 68.3
Hund12365 Selenicereus undatus HOM05D004545 ORTHO05D005420 4.8e-104 381.7 298 69.5
Aqoxy2G01628 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 8.2e-104 380.9 294 69.4
TAR624G0840 Trochodendron aralioides HOM05D004545 ORTHO05D005420 3.1e-103 379.0 298 68.8
PSO384G1132 Papaver somniferum HOM05D004545 ORTHO05D005420 5.3e-103 378.3 292 67.5
PSO384G3673 Papaver somniferum HOM05D004545 ORTHO05D005420 5.3e-103 378.3 293 67.6
AUR62018128 Chenopodium quinoa HOM05D004545 ORTHO05D005420 7.0e-103 377.9 272 72.1
AUR62034461 Chenopodium quinoa HOM05D004545 ORTHO05D005420 1.2e-102 377.1 272 71.7
PSO384G1091 Papaver somniferum HOM05D004545 ORTHO05D005420 2.6e-102 375.9 292 67.1
unitig_0.g926 Utricularia gibba HOM05D004545 ORTHO05D005420 1.7e-101 373.2 294 68.0
Lj5g0014275 Lotus japonicus HOM05D004545 ORTHO05D005420 1.9e-100 369.8 231 80.5
Aqoxy4G01985 Aquilegia oxysepala HOM05D004545 ORTHO05D005420 9.4e-100 367.5 292 66.8
MBI15_g08964_MAGBIO Magnolia biondii HOM05D004545 ORTHO05D005420 1.6e-99 366.7 304 67.8
arahy.Tifrunner.gnm1.ann1.DQ148B Arachis hypogaea HOM05D004545 ORTHO05D005420 2.7e-99 365.9 247 77.7
Peaxi162Scf00102g00840 Petunia axillaris HOM05D004545 ORTHO05D005420 4.7e-99 365.2 291 70.4
arahy.Tifrunner.gnm1.ann1.71GTDD Arachis hypogaea HOM05D004545 ORTHO05D005420 6.1e-99 364.8 247 77.7
arahy.Tifrunner.gnm1.ann1.N045ZR Arachis hypogaea HOM05D004545 ORTHO05D005420 1.0e-98 364.0 247 77.3
Ca_24113_v3 Cicer arietinum L. HOM05D004545 ORTHO05D005420 1.7e-96 356.7 246 74.4
Lj1A780G55 Lonicera japonica HOM05D004545 ORTHO05D005420 2.2e-96 356.3 253 76.7
Medtr4g068700 Medicago truncatula HOM05D004545 ORTHO05D005420 6.3e-96 354.8 233 78.1
ATR0051G053 Amborella trichopoda HOM05D004545 ORTHO05D005420 2.4e-95 352.8 301 63.8
DCAR_027885 Daucus carota HOM05D004545 ORTHO05D005420 1.2e-94 350.5 228 78.9
Psat7g206840 Pisum sativum HOM05D004545 ORTHO05D005420 3.5e-94 349.0 241 74.3
vmacro09357 Vaccinium macrocarpon HOM05D004545 ORTHO05D005420 6.1e-91 338.2 260 73.8
Os08g0204800 Oryza sativa ssp. japonica HOM05D004545 ORTHO05D005420 1.5e-89 333.6 268 66.4
HPP92_013545 Vanilla planifolia HOM05D004545 ORTHO05D005420 9.8e-89 330.9 284 63.0
Medtr1g102640 Medicago truncatula HOM05D004545 ORTHO05D005420 1.0e-85 320.9 216 78.2
Zm00001eb413680 Zea mays HOM05D004545 ORTHO05D005420 2.9e-85 319.3 266 64.3
FAN09G3372 Fragaria x ananassa HOM05D004545 ORTHO05D005420 1.7e-80 303.5 180 85.6
DCAR_021142 Daucus carota HOM05D004545 ORTHO05D005420 3.7e-80 302.4 296 60.8
SGA_v2.0_scaffold51G18651 Striga asiatica HOM05D004545 ORTHO05D005420 1.4e-79 300.4 216 74.1
Lsat_1_v5_gn_9_105760 Lactuca sativa HOM05D004545 ORTHO05D005420 5.4e-79 298.5 236 65.7
Psat6g203400 Pisum sativum HOM05D004545 ORTHO05D005420 5.4e-79 298.5 232 67.2
arahy.Tifrunner.gnm1.ann1.1MU1EY Arachis hypogaea HOM05D004545 ORTHO05D005420 7.0e-79 298.1 234 70.5
Nn1g08031 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.2e-78 297.4 180 79.4
CSS0021334 Camellia sinensis var. sinensis HOM05D004545 ORTHO05D005420 2.3e-74 283.1 214 73.8
SMO340G0284 Selaginella moellendorffii HOM05D004545 ORTHO05D005420 8.9e-74 281.2 298 51.3
Pp3c6_19990 Physcomitrium patens HOM05D004545 ORTHO05D005420 3.4e-73 279.3 317 47.9
HanXRQChr03g0076011 Helianthus annuus HOM05D004545 ORTHO05D005420 3.7e-72 275.8 252 58.3
ECA240G4712 Erigeron canadensis HOM05D003996 ORTHO05D004665 5.4e-71 271.9 207 66.2
AagrBONN_evm.TU.Sc2ySwM_228.751 Anthoceros agrestis HOM05D004545 ORTHO05D005420 2.0e-70 270.0 309 50.2
Mapoly0045s0122 Marchantia polymorpha HOM05D004545 ORTHO05D005420 1.3e-69 267.3 246 56.5
CDE05G2122 Ceratophyllum demersum HOM05D004545 ORTHO05D005420 2.1e-67 260.0 238 57.6
HPP92_013592 Vanilla planifolia HOM05D004545 ORTHO05D005420 6.2e-67 258.5 180 69.4
Oeu040086.1 Olea europaea HOM05D004545 ORTHO05D005420 4.4e-65 252.3 250 58.4
SEGI_00177 Sequoiadendron giganteum HOM05D004545 ORTHO05D005420 1.1e-63 247.7 178 65.2
Nitab4.5_0000185g0270 Nicotiana tabacum HOM05D004545 ORTHO05D005420 1.2e-59 234.2 197 64.5
Nn6g32193 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.8e-58 230.3 164 69.5
Sopen08g004850 Solanum pennellii HOM05D004545 ORTHO05D005420 3.1e-58 229.6 140 81.4
RcHm_v2.0_Chr1g0329411 Rosa chinensis HOM05D004545 ORTHO05D005420 5.8e-57 225.3 254 56.3
CBR_g58792 Chara braunii HOM05D004545 ORTHO05D005420 3.2e-47 193.0 277 41.5
RcHm_v2.0_Chr2g0158231 Rosa chinensis HOM05D004545 ORTHO05D005420 2.7e-46 189.9 170 63.5
Gohir.D10G162700 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.9e-44 183.7 136 70.6
Sopen08g004840 Solanum pennellii HOM05D004545 ORTHO05D005420 1.3e-40 171.0 142 67.6
Hund15353 Selenicereus undatus HOM05D004545 ORTHO05D005420 6.4e-40 168.7 121 74.4
Gohir.D10G109450 Gossypium hirsutum HOM05D004545 ORTHO05D005420 1.4e-34 151.0 90 82.2
Gorai.011G120100 Gossypium raimondii HOM05D004545 ORTHO05D005420 1.0e-29 134.8 79 82.3
Nn6g33383 Nelumbo nucifera HOM05D004545 ORTHO05D005420 1.7e-29 134.0 82 80.5
RcHm_v2.0_Chr2g0158241 Rosa chinensis HOM05D004545 ORTHO05D005420 1.4e-26 124.4 64 90.6
RcHm_v2.0_Chr1g0361251 Rosa chinensis HOM05D004545 ORTHO05D005420 3.1e-18 96.7 67 79.1
RcHm_v2.0_Chr2g0158191 Rosa chinensis HOM05D004545 ORTHO05D005420 1.0e-13 81.6 88 54.5
HPP92_013591 Vanilla planifolia HOM05D004545 ORTHO05D005420 1.5e-12 77.8 104 51.9
Nn6g33384 Nelumbo nucifera HOM05D004545 ORTHO05D005420 3.3e-12 76.6 47 76.6
Medtr2g005760 Medicago truncatula HOM05D004545 ORTHO05D005420 1.4e-10 71.2 50 72.0
FAN09G2083 Fragaria x ananassa HOM05D004545 ORTHO05D005420 2.4e-10 70.5 90 53.3
BcaNung06412 Brassica carinata HOM05D004545 ORTHO05D095766 1.9e-07 60.8 106 44.3


User provided reference genes

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