Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 1.6e-42 176.4 146 100.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 9.7e-40 167.2 148 75.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 2.9e-36 155.6 104 94.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 2.9e-36 155.6 104 94.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 2.9e-36 155.6 104 94.2
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 1.9e-35 152.9 104 83.7
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 3.2e-35 152.1 104 90.4
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 5.1e-33 144.8 105 81.9
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 5.1e-33 144.8 105 81.9
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 5.1e-33 144.8 105 81.9
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 1.1e-32 143.7 104 79.8
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 3.3e-32 142.1 104 76.0
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 5.7e-32 141.4 103 81.6
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 5.7e-32 141.4 103 81.6
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 9.1e-30 134.0 104 74.0
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 2.6e-29 132.5 104 71.2
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 4.5e-29 131.7 104 71.2
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 5.5e-27 124.8 104 79.8
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 2.7e-26 122.5 108 70.4
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 6.1e-26 121.3 105 76.2
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 1.5e-24 116.7 108 66.7
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 8.5e-20 100.9 109 59.6
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.9e-19 99.8 106 57.5
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.9e-19 99.8 106 57.5
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.5e-19 99.4 109 58.7
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.2e-19 99.0 104 54.8
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 5.5e-19 98.2 109 56.9
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.2e-19 97.8 104 54.8
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 1.2e-18 97.1 108 54.6
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 1.2e-18 97.1 106 59.4
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 1.6e-18 96.7 106 57.5
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 1.6e-18 96.7 106 56.6
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 2.1e-18 96.3 104 51.9
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 3.6e-18 95.5 105 59.0
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 3.6e-18 95.5 108 54.6
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 4.7e-18 95.1 108 56.5
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 4.7e-18 95.1 104 53.8
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 1.0e-17 94.0 107 54.2
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 1.4e-17 93.6 107 55.1
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 1.8e-17 93.2 105 57.1
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 3.0e-17 92.4 107 51.4
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 3.9e-17 92.0 108 51.9
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 6.7e-17 91.3 105 52.4
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 6.7e-17 91.3 107 52.3
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 8.8e-17 90.9 107 51.4
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 1.1e-16 90.5 105 51.4
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.5e-16 90.1 105 51.4
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 1.5e-16 90.1 110 55.5
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 3.3e-16 89.0 108 52.8
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.3e-16 89.0 108 52.8
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 3.3e-16 89.0 108 54.6
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.3e-16 89.0 109 50.5
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 4.4e-16 88.6 105 52.4
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 4.4e-16 88.6 109 59.6
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 4.4e-16 88.6 106 49.1
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 5.7e-16 88.2 106 53.8
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 5.7e-16 88.2 105 52.4
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 7.4e-16 87.8 105 51.4
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 9.7e-16 87.4 108 51.9
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 9.7e-16 87.4 109 49.5
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 9.7e-16 87.4 105 61.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.3e-15 87.0 107 51.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 1.3e-15 87.0 106 53.8
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 1.3e-15 87.0 108 51.9
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 1.3e-15 87.0 107 48.6
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 1.3e-15 87.0 105 57.1
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.7e-15 86.7 105 61.0
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.7e-15 86.7 104 49.0
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 1.7e-15 86.7 108 50.9
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 1.7e-15 86.7 101 52.5
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.2e-15 86.3 106 53.8
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.2e-15 86.3 105 48.6
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 2.8e-15 85.9 105 51.4
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 2.8e-15 85.9 107 48.6
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.8e-15 85.9 106 53.8
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 3.7e-15 85.5 105 52.4
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 3.7e-15 85.5 105 49.5
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.7e-15 85.5 105 51.4
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 4.8e-15 85.1 117 50.4
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 4.8e-15 85.1 107 48.6
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 4.8e-15 85.1 105 47.6
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.8e-15 85.1 104 57.7
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 4.8e-15 85.1 107 46.7
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 6.3e-15 84.7 104 56.7
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 8.2e-15 84.3 102 49.0
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 8.2e-15 84.3 105 51.4
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 8.2e-15 84.3 105 51.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 8.2e-15 84.3 109 49.5
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 8.2e-15 84.3 108 51.9
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.4e-14 83.6 103 53.4
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 1.8e-14 83.2 109 48.6
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.4e-14 82.8 107 48.6
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 3.1e-14 82.4 103 52.4
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 4.1e-14 82.0 105 47.6
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 4.1e-14 82.0 111 53.2
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 5.3e-14 81.6 113 53.1
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 9.1e-14 80.9 105 51.4
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 9.1e-14 80.9 104 60.6
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.0e-13 79.7 104 49.0
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 2.6e-13 79.3 109 52.3
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 3.5e-13 79.0 109 46.8
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 3.5e-13 79.0 109 46.8
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 4.5e-13 78.6 114 53.5
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.3e-12 77.0 109 46.8
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.3e-12 77.0 102 47.1
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 2.9e-12 75.9 101 47.5
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 2.9e-12 75.9 108 47.2
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 1.1e-11 73.9 104 51.0
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-11 73.6 104 55.8
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.5e-11 72.8 104 46.2
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 4.2e-11 72.0 113 46.0
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 1.6e-10 70.1 103 46.6
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 2.1e-10 69.7 112 42.0
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 3.6e-10 68.9 106 49.1
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 2.3e-09 66.2 109 45.9
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.5e-08 63.5 98 46.9
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 1.5e-08 63.5 109 45.0
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 3.3e-08 62.4 105 45.7
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 9.7e-08 60.8 105 46.7
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 9.7e-08 60.8 105 42.9
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 1.7e-07 60.1 105 46.7
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 1.7e-07 60.1 73 45.2
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.7e-07 60.1 77 51.9
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 4.8e-07 58.5 74 40.5
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 4.8e-07 58.5 107 48.6
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 4.8e-07 58.5 138 34.8
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 8.2e-07 57.8 90 41.1
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.1e-06 57.4 114 39.5
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 4.1e-06 55.5 72 45.8
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 5.3e-06 55.1 59 57.6
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 7.0e-06 54.7 57 56.1


User provided reference genes

Program Settings