Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 1.7e-252 875.9 603 100.0
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 1.6e-237 826.2 619 93.4
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.1e-230 803.5 634 88.5
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 2.6e-192 676.0 627 69.9
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 1.0e-180 637.5 667 71.5
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 7.5e-171 604.7 625 77.8
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.1e-169 597.8 670 69.9
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 7.7e-168 594.7 673 68.5
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 6.6e-167 591.7 670 74.2
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.5e-142 510.0 669 55.5
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 1.2e-136 491.1 667 64.2
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 3.9e-135 486.1 706 63.9
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 6.9e-116 422.2 701 54.6
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.1e-102 378.3 692 56.5
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 1.5e-62 245.0 550 45.6
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 2.8e-61 240.7 544 45.6
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 4.8e-61 240.0 711 36.4
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.1e-60 236.9 564 44.0
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 5.4e-60 236.5 666 35.3
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.0e-60 236.1 711 40.9
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 1.6e-59 235.0 666 40.4
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.7e-58 231.5 757 35.5
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 2.2e-58 231.1 550 46.7
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 7.2e-57 226.1 705 38.0
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 7.2e-57 226.1 681 42.7
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 7.2e-57 226.1 661 35.4
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 1.2e-56 225.3 739 37.1
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.2e-56 225.3 601 37.9
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 1.6e-56 224.9 685 38.7
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 2.7e-56 224.2 754 38.7
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 3.6e-56 223.8 662 39.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 1.0e-55 222.2 726 40.5
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 5.2e-55 219.9 718 41.8
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.3e-53 215.3 690 40.9
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 2.2e-53 214.5 562 42.0
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 2.2e-53 214.5 662 39.6
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 6.3e-53 213.0 718 36.4
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 8.3e-53 212.6 729 39.6
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-52 212.2 659 40.7
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.1e-52 212.2 704 39.1
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 4.1e-52 210.3 736 40.1
AL6G17260 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 9.2e-52 209.1 215 60.9
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 1.2e-51 208.8 735 38.2
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.6e-51 208.4 703 43.5
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 4.5e-51 206.8 716 41.1
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 4.5e-51 206.8 694 42.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 4.5e-51 206.8 735 40.7
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 5.9e-51 206.5 695 40.7
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 5.9e-51 206.5 691 35.6
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 5.9e-51 206.5 619 38.0
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 1.3e-50 205.3 705 44.0
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 2.9e-50 204.1 573 37.7
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 8.6e-50 202.6 675 38.1
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.5e-49 201.8 591 39.9
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 3.3e-49 200.7 698 41.7
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 7.3e-49 199.5 683 37.2
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 7.3e-49 199.5 656 44.5
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-48 198.7 683 37.2
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-48 198.7 683 37.2
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 1.6e-48 198.4 613 41.3
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 1.6e-48 198.4 638 36.5
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.6e-48 198.4 631 35.7
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 2.8e-48 197.6 677 37.5
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 3.6e-48 197.2 652 41.4
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 4.7e-48 196.8 702 40.0
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 4.7e-48 196.8 652 36.0
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 8.0e-48 196.1 695 39.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 1.0e-47 195.7 694 41.9
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 2.3e-47 194.5 639 38.5
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 4.0e-47 193.7 651 36.7
BcaB05g24123 Brassica carinata HOM05D003795 ORTHO05D004308 5.2e-47 193.4 381 45.9
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 5.2e-47 193.4 517 35.4
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.2e-47 193.4 642 39.4
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.5e-46 191.8 675 39.6
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 2.6e-46 191.0 711 44.4
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 3.4e-46 190.7 708 42.5
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 9.8e-46 189.1 615 41.5
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 1.1e-44 185.7 741 40.2
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.4e-44 185.3 666 35.4
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 3.2e-44 184.1 692 36.4
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 4.1e-44 183.7 641 41.7
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 2.0e-43 181.4 711 35.0
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 3.5e-43 180.6 677 34.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 4.6e-43 180.3 667 33.9
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 4.6e-43 180.3 671 41.3
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 2.3e-42 177.9 649 38.4
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-41 174.9 660 36.5
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 7.3e-41 172.9 623 32.7
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.2e-40 172.2 757 36.7
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 2.1e-40 171.4 680 32.9
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 4.7e-40 170.2 700 42.0
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 8.0e-40 169.5 678 38.5
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 5.2e-39 166.8 706 33.7
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.6e-38 164.5 689 34.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 5.8e-38 163.3 589 41.1
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 5.8e-38 163.3 646 35.3
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 7.5e-38 162.9 419 37.2
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 1.7e-37 161.8 638 32.8
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 3.7e-37 160.6 549 37.2
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 3.7e-37 160.6 549 37.2
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 6.4e-37 159.8 708 31.8
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 8.3e-37 159.5 564 36.3
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 1.9e-36 158.3 623 36.4
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 5.4e-36 156.8 705 36.2
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 7.0e-36 156.4 544 36.4
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 9.2e-36 156.0 616 37.0
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 1.2e-35 155.6 627 33.5
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.0e-34 152.5 536 38.2
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 1.0e-34 152.5 632 31.5
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 8.6e-34 149.4 616 36.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.5e-33 148.7 445 33.9
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 4.3e-33 147.1 719 41.0
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 4.3e-33 147.1 540 43.7
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 7.3e-33 146.4 582 33.2
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 6.2e-32 143.3 338 36.7
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 4.0e-31 140.6 622 29.7
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 6.8e-31 139.8 715 33.4
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 6.8e-31 139.8 626 35.3
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 3.4e-30 137.5 718 33.6
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 5.8e-30 136.7 604 38.2
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 5.8e-30 136.7 742 37.1
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 5.8e-30 136.7 710 33.0
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 9.8e-30 136.0 617 31.4
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-29 134.8 548 39.1
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 2.2e-29 134.8 616 29.4
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 7.1e-28 129.8 541 32.0
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.9e-25 121.7 231 40.3
Aa31LG1G18520 Aethionema arabicum HOM05D003795 ORTHO05D026452 1.6e-24 118.6 118 66.1
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 3.6e-24 117.5 617 28.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 4.7e-24 117.1 302 40.4
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 2.3e-23 114.8 641 27.9
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 8.9e-23 112.8 602 28.4
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.5e-22 112.1 757 35.0
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 7.6e-22 109.8 626 29.7
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 2.2e-21 108.2 251 36.7
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 2.9e-21 107.8 521 26.3
BraA06t25267Z Brassica rapa HOM05D003795 ORTHO05D026452 3.7e-21 107.5 74 86.5
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 4.9e-21 107.1 288 35.1
A06p21800 Brassica napus HOM05D003795 ORTHO05D026452 3.2e-20 104.4 76 82.9
AUR62017269 Chenopodium quinoa HOM05D003795 ORTHO05D004308 3.2e-20 104.4 377 35.3
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 5.4e-20 103.6 621 29.8
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 7.1e-20 103.2 622 29.3
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 9.2e-20 102.8 641 30.3
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 3.5e-19 100.9 441 32.9
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 6.0e-19 100.1 689 29.5
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 3.0e-18 97.8 517 26.9
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 6.6e-18 96.7 648 29.2
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 6.6e-18 96.7 748 26.2
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 8.6e-18 96.3 665 28.4
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 1.1e-17 95.9 442 41.9
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 4.3e-17 94.0 334 47.3
Aa31LG1G18490 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.2e-16 92.4 61 78.7
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.6e-16 92.0 622 33.3
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 8.9e-15 86.3 426 42.5
C03p77490 Brassica napus HOM05D011073 ORTHO05D013800 7.6e-14 83.2 82 67.1
BraA02t06724Z Brassica rapa HOM05D011073 ORTHO05D013800 7.6e-14 83.2 82 67.1
BcaB04g20778 Brassica carinata HOM05D011073 ORTHO05D013800 8.4e-13 79.7 81 65.4
C03p10570 Brassica napus HOM05D011073 ORTHO05D013800 8.4e-13 79.7 81 65.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 8.4e-13 79.7 98 50.0
AUR62010625 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.9e-12 78.6 156 49.4
BolC4t22963H Brassica oleracea HOM05D011073 ORTHO05D013800 3.2e-12 77.8 80 65.0
BcaB07g34060 Brassica carinata HOM05D003795 ORTHO05D004308 4.2e-12 77.4 78 61.5
BolC9t54509H Brassica oleracea HOM05D011073 ORTHO05D013800 4.2e-12 77.4 58 79.3
BraA05t20886Z Brassica rapa HOM05D003089 ORTHO05D001766 7.1e-12 76.6 185 55.7
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.2e-11 75.9 318 31.8
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 3.5e-11 74.3 313 31.3
Peaxi162Scf00116g00915 Petunia axillaris HOM05D004744 ORTHO05D005655 6.0e-11 73.6 174 35.1
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 1.0e-10 72.8 537 35.6
BcaC04g22717 Brassica carinata HOM05D011073 ORTHO05D013800 1.3e-10 72.4 52 78.8
A05p19800 Brassica napus HOM05D011073 ORTHO05D013800 1.7e-10 72.0 239 49.4
Sabra16G0322400 Salix brachista HOM05D003795 ORTHO05D004308 3.9e-10 70.9 108 45.4
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.5e-09 68.9 250 32.4
Prupe.7G058800 Prunus persica HOM05D003795 ORTHO05D004308 1.5e-09 68.9 75 58.7
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 6.2e-08 63.5 156 35.9
Lalb_Chr10g0103871 Lupinus albus HOM05D003795 ORTHO05D004308 1.4e-07 62.4 100 48.0
AUR62010626 Chenopodium quinoa HOM05D003795 ORTHO05D004308 1.8e-07 62.0 139 38.1
A09p23250 Brassica napus HOM05D003795 ORTHO05D026452 5.8e-06 57.0 36 88.9
TAR629G2443 Trochodendron aralioides HOM05D003795 ORTHO05D004308 5.8e-06 57.0 59 59.3


User provided reference genes

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