Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08731 Brassica carinata HOM05D002897 ORTHO05D007570 1.2e-76 289.7 138 100.0
BcaC02g11346 Brassica carinata HOM05D002897 ORTHO05D007570 1.7e-41 172.9 106 82.1
C04p17040 Brassica napus HOM05D002897 ORTHO05D007570 1.7e-41 172.9 106 82.1
C04p62130 Brassica napus HOM05D002897 ORTHO05D007570 1.7e-41 172.9 113 77.0
BolC4t23256H Brassica oleracea HOM05D002897 ORTHO05D007570 1.7e-41 172.9 106 82.1
BolC4t27692H Brassica oleracea HOM05D002897 ORTHO05D007570 1.7e-41 172.9 117 76.9
A05p13340 Brassica napus HOM05D002897 ORTHO05D007570 2.2e-41 172.6 106 82.1
BraA05t20273Z Brassica rapa HOM05D002897 ORTHO05D007570 2.2e-41 172.6 106 82.1
BcaB06g28612 Brassica carinata HOM05D002897 ORTHO05D007570 2.8e-41 172.2 113 77.0
BraA04t18016Z Brassica rapa HOM05D002897 ORTHO05D007570 2.8e-41 172.2 113 77.0
BcaB02g10485 Brassica carinata HOM05D002897 ORTHO05D007570 3.7e-41 171.8 106 81.1
BraA05t20235Z Brassica rapa HOM05D002897 ORTHO05D007570 4.8e-41 171.4 106 81.1
A05p12950 Brassica napus HOM05D002897 ORTHO05D007570 1.1e-40 170.2 106 80.2
BcaB02g10455 Brassica carinata HOM05D002897 ORTHO05D007570 3.1e-40 168.7 106 79.2
CARHR126500 Cardamine hirsuta HOM05D002897 ORTHO05D007570 9.1e-40 167.2 115 75.7
Thhalv10017400m.g Eutrema salsugineum HOM05D002897 ORTHO05D007570 1.6e-39 166.4 108 78.7
AL4G28050 Arabidopsis lyrata HOM05D002897 ORTHO05D007570 5.9e-39 164.5 108 77.8
Sp4g14970 Schrenkiella parvula HOM05D002897 ORTHO05D007570 7.7e-39 164.1 108 77.8
Carub.0004s1398 Capsella rubella HOM05D002897 ORTHO05D007570 1.7e-38 162.9 108 76.9
AT2G32650 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 5.0e-38 161.4 108 76.9
AT2G32180 Arabidopsis thaliana HOM05D002897 ORTHO05D007570 1.1e-37 160.2 108 75.9
Aa31LG5G4700 Aethionema arabicum HOM05D002897 ORTHO05D007570 1.2e-36 156.8 109 72.5
BcaC02g07907 Brassica carinata HOM05D002897 ORTHO05D007570 4.7e-36 154.8 97 79.4
Cfa014330 Carpinus fangiana HOM05D002897 ORTHO05D007570 1.7e-33 146.4 104 69.2
Haze_12785 Corylus avellana HOM05D002897 ORTHO05D007570 2.2e-33 146.0 104 69.2
THA.LOC104826139 Tarenaya hassleriana HOM05D002897 ORTHO05D007570 2.2e-33 146.0 121 63.6
Potri.014G156900 Populus trichocarpa HOM05D002897 ORTHO05D007570 2.8e-33 145.6 123 61.0
Atru.chr6.3237 Acer truncatum HOM05D002897 ORTHO05D007570 1.1e-32 143.7 111 65.8
CiPaw.03G157100 Carya illinoinensis HOM05D002897 ORTHO05D007570 2.4e-32 142.5 97 72.2
PGR142G0275 Punica granatum HOM05D002897 ORTHO05D007570 2.4e-32 142.5 103 67.0
Cpa.g.sc132.6 Carica papaya HOM05D002897 ORTHO05D007570 3.1e-32 142.1 97 71.1
CANSAT64G1239 Cannabis sativa HOM05D002897 ORTHO05D007570 7.0e-32 141.0 103 68.0
MD09G1112200 Malus domestica HOM05D002897 ORTHO05D007570 7.0e-32 141.0 122 62.3
Manes.13G067600 Manihot esculenta HOM05D002897 ORTHO05D007570 7.0e-32 141.0 91 71.4
Manes.13G067625 Manihot esculenta HOM05D002897 ORTHO05D007570 7.0e-32 141.0 91 71.4
arahy.Tifrunner.gnm1.ann1.P1R172 Arachis hypogaea HOM05D002897 ORTHO05D007570 9.1e-32 140.6 133 57.9
Eucgr.K00770 Eucalyptus grandis HOM05D002897 ORTHO05D007570 9.1e-32 140.6 124 58.1
Sabra14G0118700 Salix brachista HOM05D002897 ORTHO05D007570 9.1e-32 140.6 101 67.3
arahy.Tifrunner.gnm1.ann1.0I3WMA Arachis hypogaea HOM05D002897 ORTHO05D007570 1.2e-31 140.2 133 57.9
Prupe.3G212500 Prunus persica HOM05D002897 ORTHO05D007570 1.2e-31 140.2 101 68.3
Sed0010664 Sechium edule HOM05D002897 ORTHO05D007570 1.6e-31 139.8 110 62.7
A04p25050 Brassica napus HOM05D002897 ORTHO05D007570 2.0e-31 139.4 90 80.0
BolC4t23293H Brassica oleracea HOM05D002897 ORTHO05D007570 2.0e-31 139.4 98 74.5
MELO3C018840.2 Cucumis melo HOM05D002897 ORTHO05D007570 2.0e-31 139.4 103 65.0
CsaV3_7G003350 Cucumis sativus L. HOM05D002897 ORTHO05D007570 2.0e-31 139.4 112 60.7
QL08p031156 Quercus lobata HOM05D002897 ORTHO05D007570 3.5e-31 138.7 91 72.5
VMungo0647G0292 Vigna mungo HOM05D002897 ORTHO05D007570 3.5e-31 138.7 91 73.6
ClCG02G002160 Citrullus lanatus HOM05D002897 ORTHO05D007570 7.7e-31 137.5 97 66.0
Dinv39736 Davidia involucrata HOM05D002897 ORTHO05D008718 7.7e-31 137.5 101 67.3
FAN02G3971 Fragaria x ananassa HOM05D002897 ORTHO05D007570 7.7e-31 137.5 91 71.4
LjContig00564g0007535 Lotus japonicus HOM05D002897 ORTHO05D007570 7.7e-31 137.5 91 71.4
LjContig00564g0010319 Lotus japonicus HOM05D002897 ORTHO05D007570 7.7e-31 137.5 91 71.4
MD17G1102300 Malus domestica HOM05D002897 ORTHO05D007570 7.7e-31 137.5 101 66.3
RcHm_v2.0_Chr2g0158451 Rosa chinensis HOM05D002897 ORTHO05D007570 1.0e-30 137.1 91 71.4
Thecc.01G180200 Theobroma cacao HOM05D002897 ORTHO05D007570 1.0e-30 137.1 99 67.7
Duzib138G1435 Durio zibethinus HOM05D002897 ORTHO05D007570 1.3e-30 136.7 101 66.3
Ciclev10017105m.g Citrus clementina HOM05D002897 ORTHO05D007570 1.7e-30 136.3 97 68.0
CSS0041861 Camellia sinensis var. sinensis HOM05D002897 ORTHO05D007570 2.3e-30 136.0 108 63.0
Ca_03579_v3 Cicer arietinum L. HOM05D002897 ORTHO05D007570 2.3e-30 136.0 91 69.2
MSTRG.12280 Avicennia marina HOM05D002897 ORTHO05D007570 2.9e-30 135.6 120 60.0
FAN14G2228 Fragaria x ananassa HOM05D002897 ORTHO05D007570 2.9e-30 135.6 91 70.3
SalBow1G7922 Salvia bowleyana HOM05D002897 ORTHO05D007570 2.9e-30 135.6 104 67.3
COL.COLO4_21856 Corchorus olitorius HOM05D002897 ORTHO05D007570 3.8e-30 135.2 101 66.3
Glyma.02G270400 Glycine max HOM05D002897 ORTHO05D007570 3.8e-30 135.2 91 71.4
GSVIVG01030485001 Vitis vinifera HOM05D002897 ORTHO05D007570 3.8e-30 135.2 97 67.0
Glyma.14G046700 Glycine max HOM05D002897 ORTHO05D007570 5.0e-30 134.8 91 70.3
Peaxi162Scf00921g00013 Petunia axillaris HOM05D002897 ORTHO05D007570 5.0e-30 134.8 104 64.4
Phvul.008G211600 Phaseolus vulgaris HOM05D002897 ORTHO05D007570 6.6e-30 134.4 91 70.3
TWI75G1337 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 6.6e-30 134.4 101 65.3
TAR624G0083 Trochodendron aralioides HOM05D002897 ORTHO05D007570 6.6e-30 134.4 97 67.0
EL10Ac3g06311 Beta vulgaris HOM05D002897 ORTHO05D007570 8.6e-30 134.0 125 56.8
Gohir.A07G186700 Gossypium hirsutum HOM05D002897 ORTHO05D007570 8.6e-30 134.0 101 65.3
TPR.G31174 Trifolium pratense HOM05D002897 ORTHO05D007570 8.6e-30 134.0 91 69.2
SalBow1G1468 Salvia bowleyana HOM05D002897 ORTHO05D007570 1.1e-29 133.7 140 53.6
Actinidia09728 Actinidia chinensis HOM05D002897 ORTHO05D007570 1.5e-29 133.3 122 56.6
Oeu031218.1 Olea europaea HOM05D002897 ORTHO05D007570 1.5e-29 133.3 101 64.4
Actinidia13739 Actinidia chinensis HOM05D002897 ORTHO05D007570 3.3e-29 132.1 97 69.1
Cc05_g03210 Coffea canephora HOM05D002897 ORTHO05D007570 3.3e-29 132.1 106 62.3
Nitab4.5_0003449g0090 Nicotiana tabacum HOM05D002897 ORTHO05D007570 3.3e-29 132.1 104 62.5
AUR62006482 Chenopodium quinoa HOM05D002897 ORTHO05D007570 4.2e-29 131.7 128 56.2
DCAR_019749 Daucus carota HOM05D002897 ORTHO05D007570 4.2e-29 131.7 101 64.4
FvH4_6g42600 Fragaria vesca HOM05D002897 ORTHO05D007570 4.2e-29 131.7 91 69.2
Solyc07g049230.1 Solanum lycopersicum HOM05D002897 ORTHO05D007570 4.2e-29 131.7 105 61.9
Sopen07g025240 Solanum pennellii HOM05D002897 ORTHO05D007570 4.2e-29 131.7 105 61.9
Ah.13g074350 Amaranthus hybridus HOM05D002897 ORTHO05D007570 5.5e-29 131.3 130 53.1
AUR62030035 Chenopodium quinoa HOM05D002897 ORTHO05D007570 5.5e-29 131.3 91 69.2
Migut.H01236 Erythranthe guttata HOM05D002897 ORTHO05D007570 5.5e-29 131.3 91 69.2
Medtr1g086000 Medicago truncatula HOM05D002897 ORTHO05D007570 5.5e-29 131.3 91 68.1
Nitab4.5_0000482g0100 Nicotiana tabacum HOM05D002897 ORTHO05D007570 5.5e-29 131.3 102 65.7
Gohir.D07G193200 Gossypium hirsutum HOM05D002897 ORTHO05D007570 7.2e-29 131.0 101 64.4
Gorai.001G216300 Gossypium raimondii HOM05D002897 ORTHO05D007570 7.2e-29 131.0 101 64.4
Psat6g158840 Pisum sativum HOM05D002897 ORTHO05D007570 7.2e-29 131.0 91 68.1
PGSC0003DMG400000672 Solanum tuberosum HOM05D002897 ORTHO05D007570 9.5e-29 130.6 104 61.5
unitig_62.g23231 Utricularia gibba HOM05D002897 ORTHO05D007570 1.2e-28 130.2 91 68.1
SGA_v2.0_scaffold49G18347 Striga asiatica HOM05D002897 ORTHO05D007570 1.6e-28 129.8 97 66.0
AUR62002619 Chenopodium quinoa HOM05D002897 ORTHO05D007570 2.1e-28 129.4 91 67.0
TWI18G1070 Tripterygium wilfordii HOM05D002897 ORTHO05D007570 2.1e-28 129.4 101 62.4
CAN.G664.11 Capsicum annuum HOM05D002897 ORTHO05D007570 2.8e-28 129.0 91 67.0
Lj1P779T15 Lonicera japonica HOM05D002897 ORTHO05D007570 3.6e-28 128.6 97 62.9
HanXRQChr03g0075631 Helianthus annuus HOM05D002897 ORTHO05D007570 4.7e-28 128.3 101 59.4
Lsat_1_v5_gn_9_106701 Lactuca sativa HOM05D002897 ORTHO05D007570 4.7e-28 128.3 100 61.0
Hund20232 Selenicereus undatus HOM05D002897 ORTHO05D007570 4.7e-28 128.3 91 67.0
vmacro12175 Vaccinium macrocarpon HOM05D002897 ORTHO05D007570 4.7e-28 128.3 145 51.7
Lalb_Chr10g0105691 Lupinus albus HOM05D002897 ORTHO05D007570 6.1e-28 127.9 91 65.9
Nn1g01968 Nelumbo nucifera HOM05D002897 ORTHO05D007570 6.1e-28 127.9 101 62.4
CDE12G0398 Ceratophyllum demersum HOM05D002897 ORTHO05D007570 1.4e-27 126.7 91 64.8
AUR62022566 Chenopodium quinoa HOM05D002897 ORTHO05D007570 1.4e-27 126.7 91 67.0
Aqoxy7G01529 Aquilegia oxysepala HOM05D002897 ORTHO05D007570 3.0e-27 125.6 91 64.8
ECA240G2609 Erigeron canadensis HOM05D002897 ORTHO05D007570 4.0e-27 125.2 100 60.0
PSO566G0275 Papaver somniferum HOM05D002897 ORTHO05D007570 5.2e-27 124.8 91 61.5
PSO782G2696 Papaver somniferum HOM05D002897 ORTHO05D007570 1.5e-26 123.2 91 60.4
Sc21g0001180 Simmondsia chinensis HOM05D002897 ORTHO05D007570 1.5e-26 123.2 119 53.8
Rhsim06G0166200 Rhododendron simsii HOM05D002897 ORTHO05D007570 9.8e-26 120.6 87 66.7
FAN05G4540 Fragaria x ananassa HOM05D002897 ORTHO05D007570 2.3e-22 109.4 80 66.2
ATR0829G043 Amborella trichopoda HOM05D002897 ORTHO05D007570 3.6e-20 102.1 102 51.0
BcaB06g28611 Brassica carinata HOM05D002897 ORTHO05D007570 4.7e-20 101.7 77 72.7
Zm00001eb025350 Zea mays HOM05D002897 ORTHO05D007570 3.1e-19 99.0 97 47.4
Os02g0784900 Oryza sativa ssp. japonica HOM05D002897 ORTHO05D007570 9.8e-18 94.0 97 47.4
SEGI_35464 Sequoiadendron giganteum HOM05D002897 ORTHO05D007570 2.2e-17 92.8 135 42.2
BolC4t26713H Brassica oleracea HOM05D002897 ORTHO05D007570 4.1e-16 88.6 43 93.0
BcaB06g28610 Brassica carinata HOM05D002897 ORTHO05D007570 1.6e-15 86.7 61 77.0
C04p17460 Brassica napus HOM05D002897 ORTHO05D007570 3.0e-14 82.4 68 67.6
FAN09G3117 Fragaria x ananassa HOM05D002897 ORTHO05D007570 4.3e-13 78.6 58 69.0
SMO137G0344 Selaginella moellendorffii HOM05D002897 ORTHO05D007570 5.6e-13 78.2 91 40.7
Pp3c20_2790 Physcomitrium patens HOM05D002897 ORTHO05D007570 3.1e-11 72.4 91 38.5
CBR_g4877 Chara braunii HOM05D002897 ORTHO05D007570 1.3e-09 67.0 94 37.2
Mapoly0068s0043 Marchantia polymorpha HOM05D002897 ORTHO05D007570 6.4e-09 64.7 90 37.8
SMO358G0019 Selaginella moellendorffii HOM05D001682 ORTHO05D001625 6.4e-09 64.7 83 41.0
COL.COLO4_17397 Corchorus olitorius HOM05D001682 ORTHO05D001625 1.6e-07 60.1 113 31.9
Duzib187G1083 Durio zibethinus HOM05D001682 ORTHO05D001625 2.7e-07 59.3 105 32.4
QL09p000914 Quercus lobata HOM05D001682 ORTHO05D001625 2.7e-07 59.3 103 32.0
Gohir.A08G233900 Gossypium hirsutum HOM05D001682 ORTHO05D001625 3.5e-07 58.9 101 30.7
Pp3c9_3180 Physcomitrium patens HOM05D001682 ORTHO05D001625 3.5e-07 58.9 75 38.7
ATR1089G007 Amborella trichopoda HOM05D001682 ORTHO05D001625 6.0e-07 58.2 96 30.2
Gorai.004G271000 Gossypium raimondii HOM05D001682 ORTHO05D001625 7.8e-07 57.8 101 29.7
Thecc.05G266100 Theobroma cacao HOM05D001682 ORTHO05D001625 1.3e-06 57.0 99 32.3
SMO353G0261 Selaginella moellendorffii HOM05D001682 ORTHO05D001625 1.7e-06 56.6 81 39.5
Thecc.07G148100 Theobroma cacao HOM05D001682 ORTHO05D001625 1.7e-06 56.6 105 29.5
EL10Ac2g03831 Beta vulgaris HOM05D001682 ORTHO05D001625 2.3e-06 56.2 101 33.7
Hund19440 Selenicereus undatus HOM05D001682 ORTHO05D001625 2.3e-06 56.2 85 36.5
AUR62039132 Chenopodium quinoa HOM05D001682 ORTHO05D001625 5.1e-06 55.1 86 33.7
Gohir.D08G254100 Gossypium hirsutum HOM05D001682 ORTHO05D001625 5.1e-06 55.1 101 28.7
Lalb_Chr04g0249921 Lupinus albus HOM05D002897 ORTHO05D007570 5.1e-06 55.1 80 42.5
CANSAT80G1848 Cannabis sativa HOM05D001682 ORTHO05D001625 6.6e-06 54.7 74 32.4
Nn5g27157 Nelumbo nucifera HOM05D001682 ORTHO05D001625 6.6e-06 54.7 77 32.5


User provided reference genes

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