Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 2.6e-54 215.3 123 100.0
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 7.3e-49 197.2 123 94.3
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 3.9e-42 174.9 123 74.8
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 4.8e-40 167.9 106 95.3
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 1.9e-36 156.0 100 95.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 5.8e-30 134.4 117 63.2
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 4.2e-28 128.3 117 60.7
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 9.3e-28 127.1 122 72.1
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.2e-27 126.7 117 59.0
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 6.0e-27 124.4 117 59.0
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.5e-25 119.8 117 59.0
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 2.5e-25 119.0 117 55.6
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 4.3e-25 118.2 117 56.4
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 1.6e-24 116.3 117 67.5
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 1.4e-23 113.2 118 56.8
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 1.4e-23 113.2 118 56.8
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 1.8e-23 112.8 117 57.3
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 1.8e-23 112.8 119 57.1
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 1.8e-23 112.8 119 57.1
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 4.5e-22 108.2 118 56.8
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 2.1e-19 99.4 117 49.6
AL6G53120 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 5.5e-12 74.7 74 60.8
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 1.2e-11 73.6 111 42.3
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.7e-11 72.4 84 48.8
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.7e-11 72.4 84 48.8
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 4.7e-11 71.6 68 51.5
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.8e-10 69.7 75 50.7
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 1.8e-10 69.7 75 50.7
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 5.1e-10 68.2 60 51.7
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 6.7e-10 67.8 84 46.4
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 8.8e-10 67.4 72 48.6
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.5e-09 66.6 67 47.8
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 4.4e-09 65.1 75 48.0
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 5.7e-09 64.7 119 37.0
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 5.7e-09 64.7 111 46.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 7.4e-09 64.3 73 46.6
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.3e-08 63.5 69 50.7
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-08 63.5 75 42.7
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.2e-08 62.8 71 46.5
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 2.2e-08 62.8 71 46.5
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.2e-08 62.8 119 34.5
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 2.2e-08 62.8 66 47.0
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.8e-08 62.4 75 44.0
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.8e-08 62.4 75 44.0
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.8e-08 61.6 70 47.1
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 4.8e-08 61.6 74 45.9
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 8.2e-08 60.8 117 35.0
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 8.2e-08 60.8 68 48.5
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 1.8e-07 59.7 63 47.6
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.8e-07 59.7 63 47.6
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 1.8e-07 59.7 84 40.5
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 2.4e-07 59.3 74 43.2
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 2.4e-07 59.3 52 55.8
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-07 58.9 63 47.6
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-07 58.9 63 47.6
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 3.1e-07 58.9 63 47.6
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 4.1e-07 58.5 77 39.0
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 7.0e-07 57.8 74 37.8
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 9.1e-07 57.4 75 42.7
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 9.1e-07 57.4 80 43.8
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 1.2e-06 57.0 122 32.8
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 3.4e-06 55.5 57 47.4
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 4.5e-06 55.1 69 42.0
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.9e-06 54.7 63 44.4
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 5.9e-06 54.7 81 45.7
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 5.9e-06 54.7 47 53.2
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.9e-06 54.7 75 44.0
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 5.9e-06 54.7 61 47.5


User provided reference genes

Program Settings