Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07555 Brassica carinata HOM05D000452 ORTHO05D005748 2.7e-91 338.6 163 100.0
BcaC02g08433 Brassica carinata HOM05D000452 ORTHO05D005748 5.5e-52 208.0 119 84.9
BolC4t23229H Brassica oleracea HOM05D000452 ORTHO05D005748 4.1e-39 165.2 146 63.0
C04p54260 Brassica napus HOM05D000452 ORTHO05D005748 2.0e-38 162.9 146 62.3
BolC2t09709H Brassica oleracea HOM05D000452 ORTHO05D005748 1.3e-37 160.2 146 62.3
BcaC05g24718 Brassica carinata HOM05D000452 ORTHO05D005748 1.7e-21 106.7 78 66.7
A06p05090 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-21 106.7 78 66.7
C05p06050 Brassica napus HOM05D000452 ORTHO05D005748 1.7e-21 106.7 78 66.7
BolC5t29365H Brassica oleracea HOM05D000452 ORTHO05D005748 1.7e-21 106.7 78 66.7
BraA06t23716Z Brassica rapa HOM05D000452 ORTHO05D005748 3.9e-21 105.5 78 65.4
Thhalv10007441m.g Eutrema salsugineum HOM05D000452 ORTHO05D005748 6.8e-18 94.7 67 68.7
Sp1g06650 Schrenkiella parvula HOM05D000452 ORTHO05D005748 6.8e-18 94.7 78 62.8
BcaC03g15934 Brassica carinata HOM05D006347 ORTHO05D007835 2.6e-17 92.8 47 93.6
BcaB02g06693 Brassica carinata HOM05D000452 ORTHO05D005748 1.3e-16 90.5 78 59.0
AL1G18360 Arabidopsis lyrata HOM05D000452 ORTHO05D005748 4.9e-16 88.6 78 59.0
AT1G08030 Arabidopsis thaliana HOM05D000452 ORTHO05D005748 6.4e-16 88.2 78 57.7
CARHR007800 Cardamine hirsuta HOM05D000452 ORTHO05D005748 1.4e-15 87.0 67 62.7
BcaC03g13920 Brassica carinata HOM05D006347 ORTHO05D007835 2.4e-15 86.3 47 85.1
BolC2t07198H Brassica oleracea HOM05D006347 ORTHO05D007835 2.4e-15 86.3 47 85.1
BNapus_Darmor_BZH_scaffold_38p00360 Brassica napus HOM05D006347 ORTHO05D007835 3.2e-15 85.9 47 87.2
Carub.0001s0737 Capsella rubella HOM05D000452 ORTHO05D005748 3.2e-15 85.9 78 56.4
C02p11300 Brassica napus HOM05D006347 ORTHO05D007835 1.2e-14 84.0 47 85.1
BraA02t05690Z Brassica rapa HOM05D006347 ORTHO05D007835 1.2e-14 84.0 47 85.1
BraA08t35443Z Brassica rapa HOM05D000452 ORTHO05D005748 6.0e-14 81.6 77 55.8
BcaB03g13356 Brassica carinata HOM05D000452 ORTHO05D005748 1.0e-13 80.9 67 59.7
A08p35370 Brassica napus HOM05D000452 ORTHO05D005748 1.3e-13 80.5 67 58.2
C08p03470 Brassica napus HOM05D000452 ORTHO05D005748 9.5e-12 74.3 81 51.9
THA.LOC104826371 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 1.2e-11 73.9 65 56.9
BolC8t47149H Brassica oleracea HOM05D000452 ORTHO05D005748 3.6e-11 72.4 81 50.6
Thhalv10013199m.g Eutrema salsugineum HOM05D006347 ORTHO05D007835 3.6e-11 72.4 58 62.1
Sp6g22600 Schrenkiella parvula HOM05D006347 ORTHO05D007835 4.7e-11 72.0 57 63.2
THA.LOC104800598 Tarenaya hassleriana HOM05D000452 ORTHO05D005748 6.2e-11 71.6 67 52.2
BcaB05g22687 Brassica carinata HOM05D006347 ORTHO05D007835 1.1e-10 70.9 58 63.8
Migut.D02233 Erythranthe guttata HOM05D000452 ORTHO05D005748 2.3e-10 69.7 67 52.2
BcaB04g18661 Brassica carinata HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
BcaB06g25583 Brassica carinata HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
BcaC05g29329 Brassica carinata HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
A03p37290 Brassica napus HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
A05p37550 Brassica napus HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
C05p56110 Brassica napus HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
BolC5t34278H Brassica oleracea HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
BraA03t12889Z Brassica rapa HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
BraA05t22553Z Brassica rapa HOM05D001372 ORTHO05D002010 3.1e-10 69.3 38 89.5
Carub.0006s2054 Capsella rubella HOM05D006347 ORTHO05D007835 4.0e-10 68.9 57 63.2
BcaC01g04085 Brassica carinata HOM05D001372 ORTHO05D002010 6.8e-10 68.2 38 86.8
C03p45150 Brassica napus HOM05D001372 ORTHO05D002010 6.8e-10 68.2 38 86.8
BolC3t16779H Brassica oleracea HOM05D001372 ORTHO05D002010 6.8e-10 68.2 38 86.8
Sp3g10020 Schrenkiella parvula HOM05D001372 ORTHO05D002010 8.9e-10 67.8 38 84.2
THA.LOC104810888 Tarenaya hassleriana HOM05D006347 ORTHO05D007835 8.9e-10 67.8 48 70.8
Thhalv10021362m.g Eutrema salsugineum HOM05D001372 ORTHO05D002010 1.5e-09 67.0 36 88.9
AL6G33930 Arabidopsis lyrata HOM05D006347 ORTHO05D007835 2.0e-09 66.6 57 61.4
Zm00001eb271200 Zea mays HOM05D000452 ORTHO05D005748 2.0e-09 66.6 65 49.2
Zm00001eb376480 Zea mays HOM05D000452 ORTHO05D005748 3.4e-09 65.9 65 47.7
Phvul.011G080300 Phaseolus vulgaris HOM05D000452 ORTHO05D005748 4.4e-09 65.5 69 52.2
CARHR190750 Cardamine hirsuta HOM05D006347 ORTHO05D007835 5.8e-09 65.1 53 62.3
PGR102G2372 Punica granatum HOM05D000452 ORTHO05D005748 5.8e-09 65.1 65 49.2
Thecc.09G342400 Theobroma cacao HOM05D000452 ORTHO05D005748 5.8e-09 65.1 66 51.5
Aqoxy1G01223 Aquilegia oxysepala HOM05D000452 ORTHO05D005748 7.5e-09 64.7 66 48.5
CiPaw.14G081900 Carya illinoinensis HOM05D000452 ORTHO05D005748 7.5e-09 64.7 67 52.2
Carub.0005s2923 Capsella rubella HOM05D001372 ORTHO05D002010 9.8e-09 64.3 40 77.5
Ca_19270_v3 Cicer arietinum L. HOM05D000452 ORTHO05D005748 9.8e-09 64.3 66 54.5
Potri.009G011400 Populus trichocarpa HOM05D000452 ORTHO05D005748 9.8e-09 64.3 31 83.9
CANSAT54G2994 Cannabis sativa HOM05D000452 ORTHO05D005748 1.3e-08 63.9 67 53.7
Carub.0003s1113 Capsella rubella HOM05D001372 ORTHO05D002010 1.3e-08 63.9 38 78.9
CARHR086350 Cardamine hirsuta HOM05D001372 ORTHO05D002010 1.3e-08 63.9 38 78.9
FAN11G0834 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.3e-08 63.9 67 52.2
Lj1C203G7 Lonicera japonica HOM05D000452 ORTHO05D005748 1.3e-08 63.9 40 72.5
MD11G1137500 Malus domestica HOM05D000452 ORTHO05D005748 1.3e-08 63.9 67 50.7
Manes.04G019700 Manihot esculenta HOM05D000452 ORTHO05D005748 1.3e-08 63.9 65 50.8
QL01p021907 Quercus lobata HOM05D000452 ORTHO05D005748 1.3e-08 63.9 68 51.5
TWI79G0017 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 1.3e-08 63.9 65 49.2
Aa31LG3G5280 Aethionema arabicum HOM05D001372 ORTHO05D002010 1.7e-08 63.5 86 45.3
AL3G23370 Arabidopsis lyrata HOM05D001372 ORTHO05D002010 1.7e-08 63.5 38 76.3
FvH4_3g31960 Fragaria vesca HOM05D000452 ORTHO05D005748 1.7e-08 63.5 67 52.2
FAN21G3667 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.7e-08 63.5 67 52.2
FAN25G3410 Fragaria x ananassa HOM05D000452 ORTHO05D005748 1.7e-08 63.5 67 52.2
Gohir.A03G032800 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.7e-08 63.5 66 48.5
Gohir.D03G135600 Gossypium hirsutum HOM05D000452 ORTHO05D005748 1.7e-08 63.5 66 48.5
Gorai.003G142700 Gossypium raimondii HOM05D000452 ORTHO05D005748 1.7e-08 63.5 66 48.5
Oeu030194.1 Olea europaea HOM05D000452 ORTHO05D005748 1.7e-08 63.5 67 50.7
Os06g0158200 Oryza sativa ssp. japonica HOM05D000452 ORTHO05D005748 1.7e-08 63.5 30 86.7
COL.COLO4_18319 Corchorus olitorius HOM05D000452 ORTHO05D002419 2.2e-08 63.2 66 50.0
Sed0009159 Sechium edule HOM05D000452 ORTHO05D005748 2.2e-08 63.2 69 47.8
AT3G11800 Arabidopsis thaliana HOM05D001372 ORTHO05D002010 2.9e-08 62.8 38 76.3
Nn2g10818 Nelumbo nucifera HOM05D000452 ORTHO05D005748 3.7e-08 62.4 88 44.3
Prupe.6G103100 Prunus persica HOM05D000452 ORTHO05D005748 3.7e-08 62.4 67 50.7
TAR633G0246 Trochodendron aralioides HOM05D000452 ORTHO05D005748 3.7e-08 62.4 65 49.2
HPP92_008616 Vanilla planifolia HOM05D000452 ORTHO05D005748 4.9e-08 62.0 65 47.7
Aa31LG1G12890 Aethionema arabicum HOM05D006347 ORTHO05D007835 6.4e-08 61.6 56 57.1
Cpa.g.sc279.1 Carica papaya HOM05D000452 ORTHO05D005748 6.4e-08 61.6 66 47.0
Sc06g0010310 Simmondsia chinensis HOM05D000452 ORTHO05D005748 6.4e-08 61.6 66 47.0
SGA_v2.0_scaffold180G39657 Striga asiatica HOM05D000452 ORTHO05D005748 6.4e-08 61.6 66 47.0
VMungo1127G0723 Vigna mungo HOM05D000452 ORTHO05D005748 6.4e-08 61.6 66 50.0
HanXRQChr07g0195801 Helianthus annuus HOM05D000452 ORTHO05D005748 8.3e-08 61.2 66 48.5
MD03G1119900 Malus domestica HOM05D000452 ORTHO05D005748 1.1e-07 60.8 67 49.3
Rhsim13G0095000 Rhododendron simsii HOM05D000452 ORTHO05D005748 1.1e-07 60.8 66 48.5
GSVIVG01025200001 Vitis vinifera HOM05D000452 ORTHO05D005748 1.1e-07 60.8 95 38.9
Aa31sc122G10 Aethionema arabicum HOM05D000452 ORTHO05D005748 1.4e-07 60.5 84 45.2
Lalb_Chr01g0004351 Lupinus albus HOM05D000452 ORTHO05D005748 1.4e-07 60.5 66 50.0
PSO339G2396 Papaver somniferum HOM05D000452 ORTHO05D005748 1.4e-07 60.5 30 83.3
Atru.chr3.3611 Acer truncatum HOM05D000452 ORTHO05D005748 1.9e-07 60.1 78 43.6
arahy.Tifrunner.gnm1.ann1.AXM315 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.9e-07 60.1 66 50.0
arahy.Tifrunner.gnm1.ann1.I1PATR Arachis hypogaea HOM05D000452 ORTHO05D005748 1.9e-07 60.1 66 50.0
arahy.Tifrunner.gnm1.ann1.S7ZFT4 Arachis hypogaea HOM05D000452 ORTHO05D005748 1.9e-07 60.1 66 50.0
CiPaw.13G114400 Carya illinoinensis HOM05D000452 ORTHO05D005748 1.9e-07 60.1 66 47.0
MELO3C009553.2 Cucumis melo HOM05D001372 ORTHO05D002010 1.9e-07 60.1 86 44.2
CsaV3_3G038120 Cucumis sativus L. HOM05D001372 ORTHO05D002010 1.9e-07 60.1 86 44.2
Lj2C1024T12 Lonicera japonica HOM05D000452 ORTHO05D005748 1.9e-07 60.1 65 44.6
RcHm_v2.0_Chr5g0058721 Rosa chinensis HOM05D000452 ORTHO05D005748 1.9e-07 60.1 31 80.6
Actinidia03722 Actinidia chinensis HOM05D000452 ORTHO05D005748 2.4e-07 59.7 66 48.5
Cc01_g11000 Coffea canephora HOM05D000452 ORTHO05D005748 2.4e-07 59.7 67 46.3
Glyma.11G145300 Glycine max HOM05D000452 ORTHO05D005748 2.4e-07 59.7 66 50.0
Lalb_Chr19g0137171 Lupinus albus HOM05D000452 ORTHO05D005748 2.4e-07 59.7 66 50.0
MSTRG.21118 Avicennia marina HOM05D000452 ORTHO05D005748 3.2e-07 59.3 67 44.8
CDE02G3238 Ceratophyllum demersum HOM05D000452 ORTHO05D005748 3.2e-07 59.3 30 80.0
ClCG01G013590 Citrullus lanatus HOM05D000452 ORTHO05D005748 4.1e-07 58.9 69 44.9
Eucgr.B02508 Eucalyptus grandis HOM05D000452 ORTHO05D005748 4.1e-07 58.9 66 48.5
HanXRQChr01g0019321 Helianthus annuus HOM05D000452 ORTHO05D005748 4.1e-07 58.9 31 77.4
Nitab4.5_0005742g0010 Nicotiana tabacum HOM05D000452 ORTHO05D005748 4.1e-07 58.9 81 43.2
Psat7g192440 Pisum sativum HOM05D000452 ORTHO05D005748 4.1e-07 58.9 66 50.0
TWI31G0927 Tripterygium wilfordii HOM05D000452 ORTHO05D005748 4.1e-07 58.9 66 45.5
ClCG10G018190 Citrullus lanatus HOM05D001372 ORTHO05D002010 5.4e-07 58.5 82 43.9
CsaV3_1G013960 Cucumis sativus L. HOM05D000452 ORTHO05D005748 5.4e-07 58.5 69 46.4
Oeu014003.1 Olea europaea HOM05D000452 ORTHO05D005748 5.4e-07 58.5 67 46.3
AT5G22820 Arabidopsis thaliana HOM05D006347 ORTHO05D007835 7.1e-07 58.2 54 55.6
Cfa011305 Carpinus fangiana HOM05D000452 ORTHO05D005748 7.1e-07 58.2 65 46.2
MELO3C004897.2 Cucumis melo HOM05D000452 ORTHO05D005748 7.1e-07 58.2 33 66.7
TPR.G6153 Trifolium pratense HOM05D000452 ORTHO05D005748 7.1e-07 58.2 66 50.0
AUR62024960 Chenopodium quinoa HOM05D000452 ORTHO05D005748 9.2e-07 57.8 69 44.9
AUR62042196 Chenopodium quinoa HOM05D000452 ORTHO05D005748 9.2e-07 57.8 69 44.9
DCAR_022745 Daucus carota HOM05D000452 ORTHO05D005748 9.2e-07 57.8 81 43.2
ECA248G3240 Erigeron canadensis HOM05D000452 ORTHO05D005748 9.2e-07 57.8 30 76.7
Lj3g0027876 Lotus japonicus HOM05D000452 ORTHO05D005748 9.2e-07 57.8 66 48.5
PSO339G5930 Papaver somniferum HOM05D000452 ORTHO05D005748 9.2e-07 57.8 66 47.0
PSO384G2013 Papaver somniferum HOM05D000452 ORTHO05D005748 9.2e-07 57.8 66 47.0
PGR142G1036 Punica granatum HOM05D001372 ORTHO05D002010 9.2e-07 57.8 84 41.7
TAR636G2205 Trochodendron aralioides HOM05D000452 ORTHO05D005748 9.2e-07 57.8 66 48.5
unitig_736.g22410 Utricularia gibba HOM05D000452 ORTHO05D005748 9.2e-07 57.8 65 46.2
vmacro03204 Vaccinium macrocarpon HOM05D000452 ORTHO05D005748 9.2e-07 57.8 30 76.7
EL10Ac9g22533 Beta vulgaris HOM05D000452 ORTHO05D005748 1.2e-06 57.4 31 74.2
AUR62030722 Chenopodium quinoa HOM05D001372 ORTHO05D002010 1.2e-06 57.4 38 68.4
Peaxi162Scf00270g00311 Petunia axillaris HOM05D000452 ORTHO05D005748 1.2e-06 57.4 67 46.3
SEGI_04235 Sequoiadendron giganteum HOM05D000452 ORTHO05D005748 1.2e-06 57.4 68 45.6
EL10Ac5g11848 Beta vulgaris HOM05D001372 ORTHO05D002010 1.6e-06 57.0 38 65.8
Lsat_1_v5_gn_1_64080 Lactuca sativa HOM05D000452 ORTHO05D005748 1.6e-06 57.0 30 76.7
Medtr4g058890 Medicago truncatula HOM05D000452 ORTHO05D005748 1.6e-06 57.0 66 48.5
Nitab4.5_0000602g0100 Nicotiana tabacum HOM05D000452 ORTHO05D005748 1.6e-06 57.0 31 74.2
Solyc11g069520.2 Solanum lycopersicum HOM05D000452 ORTHO05D005748 1.6e-06 57.0 31 74.2
Sopen11g028230 Solanum pennellii HOM05D000452 ORTHO05D005748 1.6e-06 57.0 31 74.2
PGSC0003DMG400008083 Solanum tuberosum HOM05D000452 ORTHO05D005748 1.6e-06 57.0 31 74.2
C07p54990 Brassica napus HOM05D000452 ORTHO05D005748 2.7e-06 56.2 27 88.9
Haze_23811 Corylus avellana HOM05D000452 ORTHO05D005748 2.7e-06 56.2 65 44.6
Hund08166 Selenicereus undatus HOM05D000452 ORTHO05D005748 2.7e-06 56.2 65 46.2
Hma1.2p1_1353F.1_g277750 Hydrangea macrophylla HOM05D001372 ORTHO05D002010 3.5e-06 55.8 87 39.1
Hma1.2p1_1527F.1_g289036 Hydrangea macrophylla HOM05D001372 ORTHO05D002010 3.5e-06 55.8 87 39.1
Glyma.12G048800 Glycine max HOM05D001372 ORTHO05D002010 4.6e-06 55.5 43 60.5
Lsat_1_v5_gn_2_91861 Lactuca sativa HOM05D000452 ORTHO05D005748 4.6e-06 55.5 32 68.8
CAN.G675.7 Capsicum annuum HOM05D001372 ORTHO05D002010 6.0e-06 55.1 87 40.2
Ciclev10028288m.g Citrus clementina HOM05D000452 ORTHO05D005748 6.0e-06 55.1 31 71.0
Cc02_g18280 Coffea canephora HOM05D001372 ORTHO05D002010 6.0e-06 55.1 87 40.2
ECA238G2818 Erigeron canadensis HOM05D000452 ORTHO05D005748 6.0e-06 55.1 67 43.3
Hma1.2p1_0307F.1_g119780 Hydrangea macrophylla HOM05D000452 ORTHO05D005748 6.0e-06 55.1 66 45.5
Hund10846 Selenicereus undatus HOM05D001372 ORTHO05D002010 6.0e-06 55.1 38 68.4
Sopen10g022100 Solanum pennellii HOM05D001372 ORTHO05D002010 6.0e-06 55.1 87 40.2
CSS0006947 Camellia sinensis var. sinensis HOM05D000452 ORTHO05D005748 7.8e-06 54.7 30 73.3
CiPaw.10G019100 Carya illinoinensis HOM05D001372 ORTHO05D002010 7.8e-06 54.7 41 63.4
Lj3g0025626 Lotus japonicus HOM05D001372 ORTHO05D002010 7.8e-06 54.7 87 43.7
Solyc10g050450.2 Solanum lycopersicum HOM05D001372 ORTHO05D002010 7.8e-06 54.7 87 40.2
THA.LOC104809944 Tarenaya hassleriana HOM05D001372 ORTHO05D002010 7.8e-06 54.7 38 68.4


User provided reference genes

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