Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07169 Brassica carinata HOM05D007459 ORTHO05D009234 6.1e-83 310.8 165 100.0
BcaC02g07170 Brassica carinata HOM05D007459 ORTHO05D009234 6.1e-83 310.8 165 100.0
BolC4t28553H Brassica oleracea HOM05D007459 ORTHO05D009234 6.1e-83 310.8 165 100.0
A04p32820 Brassica napus HOM05D007459 ORTHO05D009234 1.7e-80 302.8 165 97.6
BraA04t18744Z Brassica rapa HOM05D007459 ORTHO05D009234 1.7e-80 302.8 165 97.6
C04p70510 Brassica napus HOM05D007459 ORTHO05D009234 5.4e-79 297.7 165 94.5
BcaB06g29324 Brassica carinata HOM05D007459 ORTHO05D009234 5.9e-78 294.3 165 93.9
BolC4t28554H Brassica oleracea HOM05D007459 ORTHO05D009234 3.4e-73 278.5 155 94.8
C04p70520 Brassica napus HOM05D007459 ORTHO05D009234 7.5e-73 277.3 155 94.2
Thhalv10001662m.g Eutrema salsugineum HOM05D007459 ORTHO05D009234 1.3e-69 266.5 171 84.2
Sp4g25650 Schrenkiella parvula HOM05D007459 ORTHO05D009234 2.9e-69 265.4 174 82.8
AL4G42340 Arabidopsis lyrata HOM05D007459 ORTHO05D009234 1.5e-68 263.1 170 84.1
Carub.0004s2600 Capsella rubella HOM05D007459 ORTHO05D009234 3.3e-68 261.9 173 82.7
AT2G43540 Arabidopsis thaliana HOM05D007459 ORTHO05D009234 4.0e-66 255.0 170 81.2
BcaC02g07168 Brassica carinata HOM05D007459 ORTHO05D009234 4.9e-64 248.1 140 94.3
CARHR138660 Cardamine hirsuta HOM05D007459 ORTHO05D009234 1.4e-63 246.5 171 78.9
Aa31LG1G25280 Aethionema arabicum HOM05D007459 ORTHO05D009234 5.0e-61 238.0 167 76.6
THA.LOC104805901 Tarenaya hassleriana HOM05D007459 ORTHO05D009234 1.6e-59 233.0 174 74.1
Cfa015229 Carpinus fangiana HOM05D007459 ORTHO05D009234 1.1e-50 203.8 169 63.9
Haze_01404 Corylus avellana HOM05D007459 ORTHO05D009234 2.3e-50 202.6 169 63.9
CiPaw.01G173000 Carya illinoinensis HOM05D007459 ORTHO05D009234 1.7e-48 196.4 171 60.8
Haze_01410 Corylus avellana HOM05D007459 ORTHO05D009234 2.2e-48 196.1 169 62.1
QL10p052586 Quercus lobata HOM05D007459 ORTHO05D009234 2.9e-48 195.7 172 61.6
MD04G1047100 Malus domestica HOM05D007459 ORTHO05D009234 4.9e-48 194.9 166 60.2
Prupe.1G201700 Prunus persica HOM05D007459 ORTHO05D009234 1.1e-47 193.7 166 60.8
Duzib151G0483 Durio zibethinus HOM05D007459 ORTHO05D009234 1.0e-45 187.2 174 58.6
PGR142G0909 Punica granatum HOM05D007459 ORTHO05D009234 1.0e-45 187.2 174 58.6
RcHm_v2.0_Chr2g0138101 Rosa chinensis HOM05D007459 ORTHO05D009234 1.0e-45 187.2 169 54.4
Ciclev10022478m.g Citrus clementina HOM05D007459 ORTHO05D009234 1.3e-45 186.8 181 55.2
Manes.04G050800 Manihot esculenta HOM05D007459 ORTHO05D009234 2.3e-45 186.0 170 60.0
Hma1.2p1_2359F.1_g320593 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 3.9e-45 185.3 171 56.7
Cc03_g12180 Coffea canephora HOM05D007459 ORTHO05D009234 8.6e-45 184.1 173 54.3
Lj6A129T18 Lonicera japonica HOM05D007459 ORTHO05D009234 8.6e-45 184.1 171 55.0
Hma1.2p1_0554F.1_g177940 Hydrangea macrophylla HOM05D007459 ORTHO05D009234 2.5e-44 182.6 171 56.1
CANSAT56G1213 Cannabis sativa HOM05D007459 ORTHO05D009234 5.6e-44 181.4 171 56.1
Dinv44169 Davidia involucrata HOM05D007459 ORTHO05D009234 5.6e-44 181.4 169 56.8
CSS0017730 Camellia sinensis var. sinensis HOM05D007459 ORTHO05D009234 1.2e-43 180.3 172 54.7
Atru.chr4.1350 Acer truncatum HOM05D007459 ORTHO05D009234 2.8e-43 179.1 172 55.8
Thecc.04G171000 Theobroma cacao HOM05D007459 ORTHO05D009234 2.8e-43 179.1 174 55.2
Lalb_Chr22g0352011 Lupinus albus HOM05D007459 ORTHO05D009234 1.8e-42 176.4 168 56.0
Sabra07G0109100 Salix brachista HOM05D007459 ORTHO05D009234 1.8e-42 176.4 174 52.9
Potri.007G134400 Populus trichocarpa HOM05D007459 ORTHO05D009234 3.1e-42 175.6 174 52.9
FAN05G5726 Fragaria x ananassa HOM05D007459 ORTHO05D009234 4.0e-42 175.3 165 55.2
Nn1g09730 Nelumbo nucifera HOM05D007459 ORTHO05D009234 5.2e-42 174.9 169 52.7
FvH4_6g31340 Fragaria vesca HOM05D007459 ORTHO05D009234 6.8e-42 174.5 165 54.5
FAN14G2685 Fragaria x ananassa HOM05D007459 ORTHO05D009234 6.8e-42 174.5 165 54.5
TAR362G1157 Trochodendron aralioides HOM05D007459 ORTHO05D009234 2.0e-41 172.9 168 53.6
Gohir.A02G092500 Gossypium hirsutum HOM05D007459 ORTHO05D009234 2.6e-41 172.6 174 54.0
Haze_01399 Corylus avellana HOM05D007459 ORTHO05D009234 5.8e-41 171.4 154 59.1
Sed0000488 Sechium edule HOM05D007459 ORTHO05D009234 5.8e-41 171.4 163 55.2
Gohir.D02G110600 Gossypium hirsutum HOM05D007459 ORTHO05D009234 7.6e-41 171.0 174 53.4
Gorai.005G125500 Gossypium raimondii HOM05D007459 ORTHO05D009234 7.6e-41 171.0 174 53.4
Sc06g0007410 Simmondsia chinensis HOM05D007459 ORTHO05D009234 9.9e-41 170.6 165 57.0
Solyc06g073170.1 Solanum lycopersicum HOM05D007459 ORTHO05D009234 9.9e-41 170.6 169 53.8
Sopen06g029540 Solanum pennellii HOM05D007459 ORTHO05D009234 1.3e-40 170.2 169 53.8
MELO3C017778.2 Cucumis melo HOM05D007459 ORTHO05D009234 2.2e-40 169.5 168 54.2
PGSC0003DMG400027018 Solanum tuberosum HOM05D007459 ORTHO05D009234 8.4e-40 167.5 169 52.7
SGA_v2.0_scaffold25G10994 Striga asiatica HOM05D007459 ORTHO05D009234 1.9e-39 166.4 173 54.3
TWI38G0757 Tripterygium wilfordii HOM05D007459 ORTHO05D009234 1.9e-39 166.4 159 56.0
COL.COLO4_28394 Corchorus olitorius HOM05D007459 ORTHO05D009234 5.4e-39 164.9 175 53.1
Nitab4.5_0013525g0010 Nicotiana tabacum HOM05D007459 ORTHO05D009234 7.1e-39 164.5 169 50.9
Rhsim09G0013300 Rhododendron simsii HOM05D007459 ORTHO05D009234 9.2e-39 164.1 172 50.6
Peaxi162Scf00180g00063 Petunia axillaris HOM05D007459 ORTHO05D009234 4.6e-38 161.8 167 50.9
TPR.G13012 Trifolium pratense HOM05D007459 ORTHO05D009234 1.3e-37 160.2 166 52.4
TPR.G6565 Trifolium pratense HOM05D007459 ORTHO05D009234 1.7e-37 159.8 164 51.8
vmacro06567 Vaccinium macrocarpon HOM05D007459 ORTHO05D009234 3.9e-37 158.7 174 49.4
CsaV3_4G002640 Cucumis sativus L. HOM05D007459 ORTHO05D009234 3.3e-36 155.6 163 52.8
Nitab4.5_0002553g0080 Nicotiana tabacum HOM05D007459 ORTHO05D009234 3.3e-36 155.6 169 49.7
Psat5g291760 Pisum sativum HOM05D007459 ORTHO05D009234 5.6e-36 154.8 166 52.4
MBI11_g23942_MAGBIO Magnolia biondii HOM05D004197 ORTHO05D004975 3.6e-35 152.1 156 52.6
Medtr2g099440 Medicago truncatula HOM05D007459 ORTHO05D009234 3.6e-35 152.1 164 50.6
Lj3g0013618 Lotus japonicus HOM05D007459 ORTHO05D009234 1.1e-34 150.6 167 49.7
Migut.N03078 Erythranthe guttata HOM05D007459 ORTHO05D009234 1.8e-34 149.8 168 51.8
Ca_01236_v3 Cicer arietinum L. HOM05D007459 ORTHO05D009234 2.4e-34 149.4 168 49.4
Lsat_1_v5_gn_8_158021 Lactuca sativa HOM05D007459 ORTHO05D009234 5.2e-34 148.3 166 47.6
HanXRQChr14g0433791 Helianthus annuus HOM05D007459 ORTHO05D009234 6.9e-34 147.9 163 47.2
unitig_85.g27223 Utricularia gibba HOM05D007459 ORTHO05D009234 6.9e-34 147.9 167 48.5
Phvul.005G155700 Phaseolus vulgaris HOM05D007459 ORTHO05D009234 3.4e-33 145.6 161 47.2
Os04g0495300 Oryza sativa ssp. japonica HOM05D007459 ORTHO05D009234 9.9e-33 144.1 163 46.6
Glyma.13G346600 Glycine max HOM05D007459 ORTHO05D009234 1.1e-31 140.6 163 47.2
HPP92_004524 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.1e-31 140.6 163 48.5
ATR0743G068 Amborella trichopoda HOM05D007459 ORTHO05D009234 1.9e-28 129.8 167 47.9
DCAR_028411 Daucus carota HOM05D007459 ORTHO05D009234 5.6e-28 128.3 163 42.9
EL10Ac3g06032 Beta vulgaris HOM05D007459 ORTHO05D009234 1.3e-27 127.1 166 43.4
AUR62002368 Chenopodium quinoa HOM05D007459 ORTHO05D009234 2.1e-27 126.3 163 43.6
AUR62023818 Chenopodium quinoa HOM05D007459 ORTHO05D009234 1.1e-26 124.0 163 43.6
Zm00001eb078650 Zea mays HOM05D007459 ORTHO05D009234 1.4e-26 123.6 163 47.2
Actinidia27099 Actinidia chinensis HOM05D007459 ORTHO05D009234 1.8e-26 123.2 140 47.9
ClCG07G015090 Citrullus lanatus HOM05D007459 ORTHO05D009234 9.0e-26 120.9 165 44.8
CDE09G0571 Ceratophyllum demersum HOM05D004197 ORTHO05D004975 2.6e-25 119.4 150 46.7
Duzib151G0582 Durio zibethinus HOM05D007459 ORTHO05D009234 1.3e-24 117.1 123 52.8
HPP92_004533 Vanilla planifolia HOM05D007459 ORTHO05D009234 1.1e-23 114.0 126 50.8
Eucgr.L02147 Eucalyptus grandis HOM05D007459 ORTHO05D009234 2.1e-22 109.8 141 42.6
Ah.07g202500 Amaranthus hybridus HOM05D007459 ORTHO05D009234 6.2e-19 98.2 166 37.3
EL10Ac5g11171 Beta vulgaris HOM05D007459 ORTHO05D009234 2.2e-16 89.7 107 43.0
SEGI_40343 Sequoiadendron giganteum HOM05D007459 ORTHO05D009234 3.8e-16 89.0 130 39.2
EL10Ac9g22812 Beta vulgaris HOM05D007459 ORTHO05D009234 1.1e-15 87.4 148 37.8
Pp3c17_9330 Physcomitrium patens HOM05D007459 ORTHO05D009234 3.0e-13 79.3 138 37.0
EL10Ac4g10228 Beta vulgaris HOM05D007459 ORTHO05D009234 2.1e-11 73.2 133 33.1
Mapoly0038s0008 Marchantia polymorpha HOM05D007459 ORTHO05D009234 3.1e-10 69.3 134 32.1
Pp3c3_12780 Physcomitrium patens HOM05D007459 ORTHO05D009234 1.2e-09 67.4 179 31.3
EL10Ac6g13927 Beta vulgaris HOM05D000045 ORTHO05D010054 2.2e-08 63.2 63 50.8
EL10Ac3g06136 Beta vulgaris HOM05D007459 ORTHO05D009234 1.4e-07 60.5 84 38.1
ECA238G4467 Erigeron canadensis HOM05D007459 ORTHO05D009234 1.6e-06 57.0 71 40.8


User provided reference genes

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