Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07153 Brassica carinata HOM05D008029 ORTHO05D016094 1.0e-81 306.6 147 100.0
BolC4t28573H Brassica oleracea HOM05D008029 ORTHO05D016094 3.1e-78 295.0 163 89.0
C04p70730 Brassica napus HOM05D008029 ORTHO05D016094 4.9e-76 287.7 163 87.1
AL4G42580 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 8.8e-33 144.1 154 50.6
Sp4g25800 Schrenkiella parvula HOM05D008029 ORTHO05D016094 1.5e-24 116.7 163 45.4
BcaC02g07154 Brassica carinata HOM05D008029 ORTHO05D016094 1.7e-23 113.2 140 46.4
A03p24430 Brassica napus HOM05D021446 ORTHO05D016094 1.1e-22 110.5 191 38.2
BraA03t11652Z Brassica rapa HOM05D021446 ORTHO05D016094 1.1e-22 110.5 191 38.2
Sp7g10340 Schrenkiella parvula HOM05D008029 ORTHO05D003588 7.2e-19 97.8 160 37.5
BcaB01g03363 Brassica carinata HOM05D008029 ORTHO05D003588 8.9e-17 90.9 152 44.1
AL4G42570 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 2.0e-16 89.7 172 38.4
Carub.0004s2627 Capsella rubella HOM05D008029 ORTHO05D003588 2.6e-16 89.4 142 38.7
CARHR050270 Cardamine hirsuta HOM05D008029 ORTHO05D003588 9.8e-16 87.4 170 36.5
AT2G43730 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 1.7e-15 86.7 162 36.4
Thhalv10001732m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 8.3e-15 84.3 150 37.3
Peaxi162Scf01044g00232 Petunia axillaris HOM05D000862 ORTHO05D003588 1.4e-14 83.6 135 34.8
BraA03t11653Z Brassica rapa HOM05D008029 ORTHO05D003588 3.1e-14 82.4 140 40.0
AT2G43740 Arabidopsis thaliana HOM05D008029 ORTHO05D003588 4.1e-14 82.0 166 36.1
A03p24440 Brassica napus HOM05D008029 ORTHO05D003588 4.1e-14 82.0 140 40.0
C04p70740 Brassica napus HOM05D008029 ORTHO05D003588 7.0e-14 81.3 137 38.7
BcaC01g05217 Brassica carinata HOM05D021446 ORTHO05D016094 9.2e-14 80.9 122 40.2
BraA05t19383Z Brassica rapa HOM05D008029 ORTHO05D003588 2.0e-13 79.7 151 37.7
A05p03950 Brassica napus HOM05D008029 ORTHO05D003588 2.7e-13 79.3 151 37.1
BcaC02g07152 Brassica carinata HOM05D008029 ORTHO05D003588 3.5e-13 79.0 137 38.0
BolC4t28574H Brassica oleracea HOM05D008029 ORTHO05D003588 3.5e-13 79.0 137 38.0
A03p46150 Brassica napus HOM05D008029 ORTHO05D003588 4.5e-13 78.6 151 36.4
CAN.G749.20 Capsicum annuum HOM05D000862 ORTHO05D003588 4.5e-13 78.6 155 33.5
Thhalv10001798m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 4.5e-13 78.6 174 35.6
MSTRG.21770 Avicennia marina HOM05D000862 ORTHO05D003588 5.9e-13 78.2 151 34.4
Oeu016489.1 Olea europaea HOM05D007843 ORTHO05D003639 5.9e-13 78.2 151 34.4
C03p29120 Brassica napus HOM05D021446 ORTHO05D016094 7.8e-13 77.8 122 39.3
BolC3t15264H Brassica oleracea HOM05D021446 ORTHO05D016094 7.8e-13 77.8 122 39.3
BraA05t19382Z Brassica rapa HOM05D008029 ORTHO05D003588 7.8e-13 77.8 156 39.7
CAN.G749.24 Capsicum annuum HOM05D000862 ORTHO05D003588 7.8e-13 77.8 155 32.9
DCAR_011947 Daucus carota HOM05D000862 ORTHO05D003588 1.0e-12 77.4 158 32.9
BolC4t28575H Brassica oleracea HOM05D008029 ORTHO05D003588 1.3e-12 77.0 147 36.1
AUR62016202 Chenopodium quinoa HOM05D008029 ORTHO05D003588 1.3e-12 77.0 149 37.6
BcaB06g29345 Brassica carinata HOM05D008029 ORTHO05D003588 2.3e-12 76.3 149 34.2
A04p33040 Brassica napus HOM05D008029 ORTHO05D003588 2.9e-12 75.9 147 35.4
AL4G42610 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 3.8e-12 75.5 148 38.5
CSS0042531 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 6.6e-12 74.7 153 32.0
Migut.N00044 Erythranthe guttata HOM05D000862 ORTHO05D003588 1.9e-11 73.2 151 32.5
TAR636G1750 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.9e-11 73.2 152 34.2
Thhalv10010901m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 2.5e-11 72.8 186 31.2
A06p31150 Brassica napus HOM05D008029 ORTHO05D003588 3.3e-11 72.4 171 30.4
CSS0041630 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.3e-11 72.0 153 32.0
BraA04t18763Z Brassica rapa HOM05D008029 ORTHO05D003588 5.6e-11 71.6 146 33.6
Nitab4.5_0001124g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.6e-11 71.6 132 34.1
CAN.G749.18 Capsicum annuum HOM05D000862 ORTHO05D003588 1.6e-10 70.1 156 31.4
PGSC0003DMG400043196 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.6e-10 70.1 148 31.1
SGA_v2.0_scaffold480G52303 Striga asiatica HOM05D000862 ORTHO05D003588 1.6e-10 70.1 151 31.8
BraA04t18762Z Brassica rapa HOM05D008029 ORTHO05D003588 3.6e-10 68.9 137 35.0
Sopen09g031900 Solanum pennellii HOM05D000862 ORTHO05D003588 3.6e-10 68.9 162 28.4
DCAR_026997 Daucus carota HOM05D000862 ORTHO05D003588 4.7e-10 68.6 158 29.1
Nitab4.5_0001787g0070 Nicotiana tabacum HOM05D000862 ORTHO05D003588 4.7e-10 68.6 158 29.7
PGSC0003DMG400006100 Solanum tuberosum HOM05D000862 ORTHO05D003588 4.7e-10 68.6 158 31.6
AL4G42600 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 6.1e-10 68.2 184 31.5
MSTRG.21769 Avicennia marina HOM05D000862 ORTHO05D003588 6.1e-10 68.2 151 31.8
AUR62001043 Chenopodium quinoa HOM05D000862 ORTHO05D003588 6.1e-10 68.2 157 33.1
Solyc09g083030.1 Solanum lycopersicum HOM05D000862 ORTHO05D003588 6.1e-10 68.2 162 28.4
BcaC01g05216 Brassica carinata HOM05D008029 ORTHO05D003588 8.0e-10 67.8 148 33.1
C03p29130 Brassica napus HOM05D008029 ORTHO05D003588 8.0e-10 67.8 148 33.1
BolC3t15265H Brassica oleracea HOM05D008029 ORTHO05D003588 8.0e-10 67.8 148 33.1
BolC4t22100H Brassica oleracea HOM05D008029 ORTHO05D003588 1.0e-09 67.4 143 35.0
BcaC01g05215 Brassica carinata HOM05D008029 ORTHO05D003588 1.4e-09 67.0 136 34.6
BraA03t11654Z Brassica rapa HOM05D008029 ORTHO05D003588 1.4e-09 67.0 149 33.6
Thhalv10009313m.g Eutrema salsugineum HOM05D008029 ORTHO05D003588 1.4e-09 67.0 149 32.9
A03p24450 Brassica napus HOM05D008029 ORTHO05D003588 1.8e-09 66.6 149 33.6
Nitab4.5_0009547g0010 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.8e-09 66.6 141 28.4
TAR636G2997 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.8e-09 66.6 140 35.7
TAR636G0912 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.3e-09 66.2 152 32.2
Aa31LG1G25450 Aethionema arabicum HOM05D008029 ORTHO05D003588 3.1e-09 65.9 166 35.5
Peaxi162Scf00062g01918 Petunia axillaris HOM05D000862 ORTHO05D003588 4.0e-09 65.5 150 31.3
Peaxi162Scf00788g00022 Petunia axillaris HOM05D008029 ORTHO05D003588 4.0e-09 65.5 136 30.1
Rhsim02G0004300 Rhododendron simsii HOM05D000862 ORTHO05D003588 4.0e-09 65.5 156 30.8
AUR62039285 Chenopodium quinoa HOM05D008029 ORTHO05D003588 5.2e-09 65.1 143 30.8
Nitab4.5_0001787g0050 Nicotiana tabacum HOM05D000862 ORTHO05D003588 5.2e-09 65.1 155 28.4
PGSC0003DMG400041736 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.2e-09 65.1 165 30.3
Potri.010G144900 Populus trichocarpa HOM05D008029 ORTHO05D003588 6.8e-09 64.7 136 31.6
CSS0022415 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 1.2e-08 63.9 141 31.2
Sopen09g031890 Solanum pennellii HOM05D000862 ORTHO05D003588 1.2e-08 63.9 161 30.4
TAR636G1248 Trochodendron aralioides HOM05D000862 ORTHO05D003588 1.2e-08 63.9 145 31.7
CAN.G749.21 Capsicum annuum HOM05D000862 ORTHO05D003588 1.5e-08 63.5 154 32.5
CAN.G575.17 Capsicum annuum HOM05D000966 ORTHO05D002384 2.6e-08 62.8 142 29.6
Rhsim04G0236200 Rhododendron simsii HOM05D000862 ORTHO05D003588 3.4e-08 62.4 153 32.7
TAR636G0362 Trochodendron aralioides HOM05D000862 ORTHO05D003588 3.4e-08 62.4 144 32.6
EL10Ac3g05500 Beta vulgaris HOM05D008029 ORTHO05D003588 4.4e-08 62.0 180 31.7
Duzib151G0999 Durio zibethinus HOM05D000862 ORTHO05D003588 4.4e-08 62.0 153 30.1
Actinidia13361 Actinidia chinensis HOM05D000862 ORTHO05D003588 5.8e-08 61.6 149 29.5
PGSC0003DMG400006098 Solanum tuberosum HOM05D000862 ORTHO05D003588 5.8e-08 61.6 153 30.1
BcaC02g07151 Brassica carinata HOM05D000384 ORTHO05D000468 7.5e-08 61.2 125 36.0
A09p45570 Brassica napus HOM05D008029 ORTHO05D003588 7.5e-08 61.2 92 40.2
BraA09t40018Z Brassica rapa HOM05D008029 ORTHO05D003588 7.5e-08 61.2 92 40.2
CARHR005280 Cardamine hirsuta HOM05D000862 ORTHO05D003588 9.8e-08 60.8 159 27.7
AUR62004914 Chenopodium quinoa HOM05D000862 ORTHO05D003588 9.8e-08 60.8 152 30.9
C03p29140 Brassica napus HOM05D008029 ORTHO05D003588 1.3e-07 60.5 175 29.1
A04p33030 Brassica napus HOM05D008029 ORTHO05D003588 1.7e-07 60.1 117 35.9
BolC3t15266H Brassica oleracea HOM05D008029 ORTHO05D003588 2.2e-07 59.7 175 28.0
Nitab4.5_0001124g0110 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.2e-07 59.7 140 30.7
Nitab4.5_0001568g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 2.2e-07 59.7 153 28.8
Sopen09g031910 Solanum pennellii HOM05D000862 ORTHO05D003588 2.2e-07 59.7 156 33.3
TAR636G2528 Trochodendron aralioides HOM05D000862 ORTHO05D003588 2.2e-07 59.7 150 32.7
Aqoxy1G02186 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 2.9e-07 59.3 150 30.7
Lsat_1_v5_gn_6_18420 Lactuca sativa HOM05D008029 ORTHO05D003588 2.9e-07 59.3 150 30.0
Aqoxy2G02742 Aquilegia oxysepala HOM05D000862 ORTHO05D003588 4.9e-07 58.5 143 31.5
CSS0039572 Camellia sinensis var. sinensis HOM05D000862 ORTHO05D003588 4.9e-07 58.5 147 29.3
Dinv15179 Davidia involucrata HOM05D000862 ORTHO05D003588 4.9e-07 58.5 167 29.9
PGSC0003DMG400040105 Solanum tuberosum HOM05D000862 ORTHO05D003588 6.4e-07 58.2 154 31.2
EL10Ac3g05501 Beta vulgaris HOM05D008029 ORTHO05D003588 8.3e-07 57.8 146 26.0
Ah.06g187570 Amaranthus hybridus HOM05D000056 ORTHO05D000019 1.4e-06 57.0 166 25.9
C04p70750 Brassica napus HOM05D000384 ORTHO05D000468 1.4e-06 57.0 125 34.4
Nitab4.5_0005132g0080 Nicotiana tabacum HOM05D000862 ORTHO05D003588 1.4e-06 57.0 118 34.7
PGSC0003DMG400041018 Solanum tuberosum HOM05D000862 ORTHO05D003588 1.4e-06 57.0 156 26.9
AL4G42590 Arabidopsis lyrata HOM05D008029 ORTHO05D003588 1.9e-06 56.6 127 34.6
Lsat_1_v5_gn_6_18400 Lactuca sativa HOM05D000862 ORTHO05D003588 1.9e-06 56.6 136 28.7
Ah.04g156870 Amaranthus hybridus HOM05D008029 ORTHO05D003588 2.4e-06 56.2 160 28.1
THA.LOC104800919 Tarenaya hassleriana HOM05D000862 ORTHO05D003588 4.1e-06 55.5 162 27.8
Nitab4.5_0000798g0040 Nicotiana tabacum HOM05D000862 ORTHO05D003588 9.2e-06 54.3 83 34.9


User provided reference genes

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