Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaC02g07085 Brassica carinata HOM05D006684 ORTHO05D008443 1.6e-108 396.4 235 100.0
BolC4t28667H Brassica oleracea HOM05D000147 ORTHO05D007841 9.3e-101 370.5 233 94.4
C04p71620 Brassica napus HOM05D000147 ORTHO05D007841 7.8e-100 367.5 232 87.5
BcaB06g29418 Brassica carinata HOM05D006684 ORTHO05D008443 2.3e-99 365.9 238 92.0
BraA04t18849Z Brassica rapa HOM05D000147 ORTHO05D007841 7.1e-93 344.4 235 88.5
Sp4g27550 Schrenkiella parvula HOM05D006684 ORTHO05D008443 1.6e-92 343.2 239 81.6
A04p33890 Brassica napus HOM05D000147 ORTHO05D007841 1.8e-88 329.7 235 86.4
CARHR140710 Cardamine hirsuta HOM05D006684 ORTHO05D008443 7.9e-76 287.7 240 72.1
Thhalv10001611m.g Eutrema salsugineum HOM05D006684 ORTHO05D008443 1.3e-75 287.0 240 70.4
AL4G44700 Arabidopsis lyrata HOM05D006684 ORTHO05D008443 9.0e-72 274.2 236 68.6
BolC4t22271H Brassica oleracea HOM05D006684 ORTHO05D008443 1.9e-69 266.5 239 66.9
Carub.0004s2814 Capsella rubella HOM05D006684 ORTHO05D008443 4.3e-66 255.4 237 66.2
AT2G45520 Arabidopsis thaliana HOM05D006684 ORTHO05D008443 9.7e-66 254.2 236 66.1
Aa31LG1G27020 Aethionema arabicum HOM05D006684 ORTHO05D008443 6.3e-65 251.5 234 65.8
BraA05t19524Z Brassica rapa HOM05D006684 ORTHO05D008443 1.2e-60 237.3 227 63.9
THA.LOC104801995 Tarenaya hassleriana HOM05D006684 ORTHO05D008443 9.7e-58 227.6 238 58.4
Cpa.g.sc18.149 Carica papaya HOM05D006684 ORTHO05D008443 1.6e-52 210.3 232 54.7
C04p06480 Brassica napus HOM05D000921 ORTHO05D002852 7.9e-52 208.0 145 80.0
Ciclev10022036m.g Citrus clementina HOM05D006684 ORTHO05D008443 1.6e-47 193.7 239 54.0
GSVIVG01027546001 Vitis vinifera HOM05D006684 ORTHO05D008443 1.1e-45 187.6 240 50.8
Atru.chr5.338 Acer truncatum HOM05D006684 ORTHO05D008443 1.6e-44 183.7 233 53.2
Prupe.2G148900 Prunus persica HOM05D006684 ORTHO05D008443 2.1e-44 183.3 235 51.5
MELO3C022508.2 Cucumis melo HOM05D006684 ORTHO05D008443 2.3e-43 179.9 235 48.1
COL.COLO4_12585 Corchorus olitorius HOM05D006684 ORTHO05D008443 8.8e-43 177.9 235 48.5
Sed0022399 Sechium edule HOM05D006684 ORTHO05D008443 2.0e-42 176.8 234 48.7
RcHm_v2.0_Chr1g0351131 Rosa chinensis HOM05D006684 ORTHO05D008443 1.3e-41 174.1 235 51.9
MD02G1199700 Malus domestica HOM05D006684 ORTHO05D008443 2.8e-41 172.9 235 53.2
CiPaw.01G260000 Carya illinoinensis HOM05D006684 ORTHO05D008443 3.7e-41 172.6 234 48.7
TAR636G0929 Trochodendron aralioides HOM05D006684 ORTHO05D008443 7.0e-40 168.3 238 47.1
QL08p051764 Quercus lobata HOM05D006684 ORTHO05D008443 1.6e-39 167.2 233 50.2
Cfa010232 Carpinus fangiana HOM05D006684 ORTHO05D008443 2.7e-39 166.4 236 49.2
Dinv32395 Davidia involucrata HOM05D006684 ORTHO05D008443 1.0e-38 164.5 241 46.9
Hund17005 Selenicereus undatus HOM05D006684 ORTHO05D008443 5.0e-38 162.2 238 47.9
CsaV3_6G006090 Cucumis sativus L. HOM05D006684 ORTHO05D008443 6.5e-38 161.8 236 47.5
FvH4_7g12340 Fragaria vesca HOM05D006684 ORTHO05D008443 1.5e-37 160.6 235 50.2
FAN06G2821 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.5e-37 160.6 235 50.2
FAN06G3889 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.5e-37 160.6 235 50.2
FAN01G2432 Fragaria x ananassa HOM05D006684 ORTHO05D008443 1.9e-37 160.2 235 50.2
CSS0020305 Camellia sinensis var. sinensis HOM05D006684 ORTHO05D008443 2.5e-37 159.8 234 46.2
LjContig00136g0018410 Lotus japonicus HOM05D006684 ORTHO05D008443 5.5e-37 158.7 231 47.2
Glyma.09G267200 Glycine max HOM05D006684 ORTHO05D008443 2.1e-36 156.8 229 47.2
CANSAT94G0012 Cannabis sativa HOM05D006684 ORTHO05D008443 2.7e-36 156.4 233 48.5
Nn6g34351 Nelumbo nucifera HOM05D006684 ORTHO05D008443 3.6e-36 156.0 248 43.1
FAN10G0264 Fragaria x ananassa HOM05D006684 ORTHO05D008443 8.0e-36 154.8 232 52.6
EL10Ac1g00926 Beta vulgaris HOM05D006684 ORTHO05D008443 2.3e-35 153.3 241 44.4
Thecc.01G373000 Theobroma cacao HOM05D006684 ORTHO05D008443 4.0e-35 152.5 234 46.6
Aqoxy7G00540 Aquilegia oxysepala HOM05D006684 ORTHO05D008443 1.2e-34 151.0 247 49.0
TWI59G0969 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 1.2e-34 151.0 232 44.4
FAN03G1779 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.4e-34 149.4 243 49.8
FAN10G2097 Fragaria x ananassa HOM05D006684 ORTHO05D008443 3.4e-34 149.4 231 54.1
Gorai.007G092800 Gossypium raimondii HOM05D006684 ORTHO05D008443 4.4e-34 149.1 234 42.3
Gohir.D11G086900 Gossypium hirsutum HOM05D006684 ORTHO05D008443 7.5e-34 148.3 234 42.3
Manes.12G048300 Manihot esculenta HOM05D006684 ORTHO05D008443 7.5e-34 148.3 239 45.6
Manes.05G043400 Manihot esculenta HOM05D006684 ORTHO05D008443 9.8e-34 147.9 240 45.8
PSO478G1842 Papaver somniferum HOM05D006684 ORTHO05D008443 3.7e-33 146.0 245 53.1
ClCG06G000300 Citrullus lanatus HOM05D006684 ORTHO05D008443 4.8e-33 145.6 281 41.3
Eucgr.E01357 Eucalyptus grandis HOM05D006684 ORTHO05D008443 6.3e-33 145.2 237 42.6
arahy.Tifrunner.gnm1.ann1.3Z62KU Arachis hypogaea HOM05D006684 ORTHO05D008443 2.4e-32 143.3 229 43.2
Nitab4.5_0010110g0010 Nicotiana tabacum HOM05D006684 ORTHO05D008443 5.4e-32 142.1 233 43.8
Gohir.A11G082800 Gossypium hirsutum HOM05D006684 ORTHO05D008443 7.0e-32 141.7 234 41.5
PGR042G1390 Punica granatum HOM05D006684 ORTHO05D008443 1.6e-31 140.6 235 39.6
PGSC0003DMG400021635 Solanum tuberosum HOM05D006684 ORTHO05D008443 2.0e-31 140.2 240 43.8
Lalb_Chr03g0039091 Lupinus albus HOM05D006684 ORTHO05D008443 4.5e-31 139.0 231 43.3
Sopen05g028070 Solanum pennellii HOM05D006684 ORTHO05D008443 4.5e-31 139.0 239 42.7
arahy.Tifrunner.gnm1.ann1.CFQ18P Arachis hypogaea HOM05D006684 ORTHO05D008443 4.2e-29 132.5 231 42.0
Cc02_g36430 Coffea canephora HOM05D006684 ORTHO05D008443 5.5e-29 132.1 238 39.5
ECA240G0119 Erigeron canadensis HOM05D006684 ORTHO05D008443 7.2e-29 131.7 230 42.2
HanXRQChr03g0093671 Helianthus annuus HOM05D006684 ORTHO05D008443 7.2e-29 131.7 234 44.0
SGA_v2.0_scaffold11G05605 Striga asiatica HOM05D006684 ORTHO05D008443 1.6e-28 130.6 229 45.9
VMungo1383G3715 Vigna mungo HOM05D006684 ORTHO05D008443 1.6e-28 130.6 229 41.0
Manes.12G048301 Manihot esculenta HOM05D006684 ORTHO05D008443 2.1e-28 130.2 237 49.8
Os06g0129800 Oryza sativa ssp. japonica HOM05D006684 ORTHO05D008443 4.7e-28 129.0 235 41.7
Phvul.008G074700 Phaseolus vulgaris HOM05D006684 ORTHO05D008443 1.0e-27 127.9 232 42.7
Sc02g0002410 Simmondsia chinensis HOM05D006684 ORTHO05D008443 1.0e-27 127.9 138 53.6
CDE04G1869 Ceratophyllum demersum HOM05D006684 ORTHO05D008443 1.4e-27 127.5 241 39.8
Manes.12G053501 Manihot esculenta HOM05D006684 ORTHO05D008443 4.0e-27 125.9 237 49.4
Potri.014G072400 Populus trichocarpa HOM05D006684 ORTHO05D008443 5.2e-27 125.6 232 45.3
Duzib133G0994 Durio zibethinus HOM05D006684 ORTHO05D008443 2.6e-26 123.2 226 42.9
Lsat_1_v5_gn_3_135520 Lactuca sativa HOM05D006684 ORTHO05D008443 5.7e-26 122.1 233 44.6
TPR.G37765 Trifolium pratense HOM05D006684 ORTHO05D008443 9.8e-26 121.3 230 41.3
AUR62004244 Chenopodium quinoa HOM05D006684 ORTHO05D008443 2.2e-25 120.2 223 39.0
Medtr7g075640 Medicago truncatula HOM05D006684 ORTHO05D008443 1.1e-24 117.9 230 41.7
Duzib138G0092 Durio zibethinus HOM05D006684 ORTHO05D008443 2.4e-24 116.7 143 54.5
Zm00001eb378390 Zea mays HOM05D006684 ORTHO05D008443 9.2e-24 114.8 245 38.0
Hma1.2p1_0053F.1_g030880 Hydrangea macrophylla HOM05D006684 ORTHO05D008443 1.2e-23 114.4 242 42.1
Peaxi162Scf00207g00165 Petunia axillaris HOM05D006684 ORTHO05D008443 1.6e-23 114.0 240 46.2
MSTRG.4882 Avicennia marina HOM05D006684 ORTHO05D008443 7.7e-23 111.7 238 39.1
PSO782G3084 Papaver somniferum HOM05D006684 ORTHO05D008443 1.3e-22 110.9 134 61.2
SalBow5G0966 Salvia bowleyana HOM05D006684 ORTHO05D008443 2.9e-22 109.8 233 38.6
Ah.07g198740 Amaranthus hybridus HOM05D006684 ORTHO05D008443 8.6e-22 108.2 195 40.5
Rhsim01G0161500 Rhododendron simsii HOM05D006684 ORTHO05D008443 1.1e-21 107.8 113 56.6
vmacro20994 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 1.1e-21 107.8 353 32.0
AUR62013604 Chenopodium quinoa HOM05D006684 ORTHO05D008443 1.9e-21 107.1 236 37.3
Nitab4.5_0001702g0200 Nicotiana tabacum HOM05D006684 ORTHO05D008443 4.3e-21 105.9 229 37.6
SalBow5G5079 Salvia bowleyana HOM05D006684 ORTHO05D008443 4.3e-21 105.9 233 38.2
CAN.G333.1 Capsicum annuum HOM05D006684 ORTHO05D008443 1.2e-20 104.4 235 42.1
Duzib138G0657 Durio zibethinus HOM05D006684 ORTHO05D008443 6.1e-20 102.1 152 46.7
Solyc05g048750.3 Solanum lycopersicum HOM05D006684 ORTHO05D008443 7.5e-18 95.1 114 53.5
Migut.N01586 Erythranthe guttata HOM05D006684 ORTHO05D008443 9.8e-18 94.7 137 48.9
ATR0757G101 Amborella trichopoda HOM05D006684 ORTHO05D008443 1.8e-16 90.5 119 47.9
TWI23G1019 Tripterygium wilfordii HOM05D006684 ORTHO05D008443 3.2e-16 89.7 106 52.8
vmacro20995 Vaccinium macrocarpon HOM05D006684 ORTHO05D008443 2.0e-15 87.0 78 59.0
Haze_16739 Corylus avellana HOM05D006684 ORTHO05D008443 4.6e-15 85.9 65 64.6
Pp3c22_10350 Physcomitrium patens HOM05D006684 ORTHO05D008443 1.3e-14 84.3 239 31.0
SEGI_35511 Sequoiadendron giganteum HOM05D006684 ORTHO05D008443 1.3e-14 84.3 236 33.9
Ca_07836_v3 Cicer arietinum L. HOM05D006684 ORTHO05D008443 2.3e-14 83.6 60 66.7
Oeu036610.1 Olea europaea HOM05D006684 ORTHO05D008443 5.0e-14 82.4 78 52.6
Haze_16738 Corylus avellana HOM05D006684 ORTHO05D008443 1.1e-13 81.3 154 40.3
SMO347G0023 Selaginella moellendorffii HOM05D006684 ORTHO05D008443 4.3e-13 79.3 230 32.2
Actinidia33456 Actinidia chinensis HOM05D006684 ORTHO05D008443 2.1e-12 77.0 146 37.7
unitig_578.g16483 Utricularia gibba HOM05D006684 ORTHO05D008443 6.2e-12 75.5 216 35.2
Psat3g104080 Pisum sativum HOM05D006684 ORTHO05D008443 6.8e-11 72.0 88 50.0
Zm00001eb269540 Zea mays HOM05D006684 ORTHO05D008443 2.6e-10 70.1 91 48.4
Mapoly0084s0081 Marchantia polymorpha HOM05D006684 ORTHO05D008443 3.4e-10 69.7 251 31.5
MBI12_g38018_MAGBIO Magnolia biondii HOM05D006684 ORTHO05D008443 9.8e-10 68.2 154 35.1
AagrBONN_evm.TU.Sc2ySwM_344.4110 Anthoceros agrestis HOM05D006684 ORTHO05D008443 9.2e-08 61.6 235 29.8
A05p05540 Brassica napus HOM05D006684 ORTHO05D008443 1.6e-07 60.8 73 54.8
HPP92_020257 Vanilla planifolia HOM05D006684 ORTHO05D008443 2.3e-06 57.0 93 46.2
SGA_v2.0_scaffold43G16466 Striga asiatica HOM05D006684 ORTHO05D008443 3.9e-06 56.2 130 40.8


User provided reference genes

Program Settings